Ss1.1-Utr1-UTR010035H02.5
|
AGGCTCACCCAGCGCGGGGGCTTCCAGGACTTCCTGACTCGCCTGGAGAATTTTACCGGG
CTGTCGCTGGTCGGGGAGCCACTCCGCAAGGCATGGAAGGTTCTGGACACTCTGATTTGC
CAGCAAGCCCATGGTCTTCCCCTCCCATCCTGGGCCTCCCCGGATGTCCTGCAGACGCTA
GCCCAGATCTCAGCTTTGGATATTGGGGCCCACGTGGGCCCACCCCGGGCAGCAGAGAAA
GCCCAGCTGACTGGGGGGATCCTGTTGGATGCCATCCTCGCTAACTTCTCTCGGGTCCAG
CACTTGGGGCTGCCTCGGGGACCTGGATGACAACAGAGGGAATGTCACCATCTCCCTCTT
CTACCGCAACGACTCTACTGGCCTGCCCTTGACGCTCAAGCTCCCCGGGTGCCCAGCCCC
CTGCTCTCTAGGCCGCTTCCGCCAGCTGACAGCCCCTGCCCGGCCTTCAGTTCAAGGGAT
CCCCTGCCATGGCTCCCACGAGCCTGCCACCCCCGCAGGTGATGGCCTTCGGTGCTGGGG
TGGGAGTCGGGGGTGCAAGTTTCGTGATTCACAGCCCCATGTTTTCCCCGCAGCCACTGT
GGTGCCCCTGCTGTCTGGGGCTGTGGCGGTGCTGGCGGTCCTCAGCATGGGGCTGGGCCT
AATGGCCTGTAGACCTGGCTGCTTGCGGGCCTGGGGAGGCCCTGTGTGAGCCCGGAAACT
GGGCACCCCTTCCCCCACAGCTGACACTGGATCCCAAAACACCTGCTC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGGCTCACCCAGCGCGGGGGCTTCCAGGACTTCCTGACTCGCCTGGAGAATTTTACCGGG
CTGTCGCTGGTCGGGGAGCCACTCCGCAAGGCATGGAAGGTTCTGGACACTCTGATTTGC
CAGCAAGCCCATGGTCTTCCCCTCCCATCCTGGGCCTCCCCGGATGTCCTGCAGACGCTA
GCCCAGATCTCAGCTTTGGATATTGGGGCCCACGTGGGCCCACCCCGGGCAGCAGAGAAA
GCCCAGCTGACTGGGGGGATCCTGTTGGATGCCATCCTCGCTAACTTCTCTCGGGTCCAG
CACTTGGGGCTGCCTCGGGGACCTGGATGACAACAGAGGGAATGTCACCATCTCCCTCTT
CTACCGCAACGACTCTACTGGCCTGCCCTTGACGCTCAAGCTCCCCGGGTGCCCAGCCCC
CTGCTCTCTAGGCCGCTTCCGCCAGCTGACAGCCCCTGCCCGGCCTTCAGTTCAAGGGAT
CCCCTGCCATGGCTCCCACGAGCCTGCCACCCCCGCAGGTGATGGCCTTCGGTGCTGGGG
TGGGAGTCGGGGGTGCAAGTTTCGTGATTCACAGCCCCATGTTTTCCCCGCAGCCACTGT
GGTGCCCCTGCTGTCTGGGGCTGTGGCGGTGCTGGCGGTCCTCAGCATGGGGCTGGGCCT
AATGGCCTGTAGACCTGGCTGCTTGCGGGCCTGGGGAGGCCCTGTGTGAGCCCGGAAACT
GGGCACCCCTTCCCCCACAGCTGACACTGGATCCCAAAACACCTGCTC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
139-257, BP173173 full-length enriched swine cDNA library, adult uterus Sus
(dbj|BP173173.1|), blast E-value=0, identity=100% |
|
139-257, CJ010370 full-length enriched swine cDNA library, adult mesenteric
(dbj|CJ010370.1|), blast E-value=0, identity=100% |
|
139-257, CJ021908 full-length enriched swine cDNA library, adult spleen Sus
(dbj|CJ021908.1|), blast E-value=0, identity=100% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
139-257, BP173173 full-length enriched swine cDNA library, adult uterus Sus
(dbj|BP173173.1|), blast E-value=0, identity=100% |
|
139-257, CJ010370 full-length enriched swine cDNA library, adult mesenteric
(dbj|CJ010370.1|), blast E-value=0, identity=100% |
|
139-257, CJ021908 full-length enriched swine cDNA library, adult spleen Sus
(dbj|CJ021908.1|), blast E-value=0, identity=100% |
|
120-257, gnl|bosTau2|chr18 (52043811-52043948) |
|
120-257, gnl|canFam2|chr1 (108935306-108935164) |
|
120-257, gnl|fr1|chrUn (245696946-245697088) |
|
120-257, gnl|hg17|chr19 (55988750-55988892) |
|
120-257, gnl|Hg17|chr19 (55988749-55988886) |
|
120-257, gnl|loxAfr1|scaffold_39875 (9152-9294) |
|
120-257, gnl|mm7|chr7 (40428175-40428033) |
|
120-257, gnl|Mm7|chr7 (40428174-40428037) |
|
120-257, gnl|panTro1|chr20 (53430329-53430471) |
|
120-257, gnl|rheMac2|chr19 (56996911-56997053) |
|
120-257, gnl|rn3|chr1 (94800238-94800096) |
| |
|
339-768, gnl|bosTau2|chr18 (52044858-52045287) |
|
339-768, gnl|Hg17|chr19 (55989854-55990284) |
|
339-768, gnl|Mm7|chr7 (40427293-40426863) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
120-257, gnl|bosTau2|chr18 (52043811-52043948) |
|
120-257, gnl|canFam2|chr1 (108935306-108935164) |
|
120-257, gnl|fr1|chrUn (245696946-245697088) |
|
120-257, gnl|hg17|chr19 (55988750-55988892) |
|
120-257, gnl|Hg17|chr19 (55988749-55988886) |
|
120-257, gnl|loxAfr1|scaffold_39875 (9152-9294) |
|
120-257, gnl|mm7|chr7 (40428175-40428033) |
|
120-257, gnl|Mm7|chr7 (40428174-40428037) |
|
120-257, gnl|panTro1|chr20 (53430329-53430471) |
|
120-257, gnl|rheMac2|chr19 (56996911-56997053) |
|
120-257, gnl|rn3|chr1 (94800238-94800096) |
| |
|
339-768, gnl|bosTau2|chr18 (52044858-52045287) |
|
339-768, gnl|Hg17|chr19 (55989854-55990284) |
|
339-768, gnl|Mm7|chr7 (40427293-40426863) |
|
fhi (0.169578) |
|
nca (0.136874) |
|
ute (0.132784) |
|
fhi (0.169578) |
|
nca (0.136874) |
|
ute (0.132784) |
