Ss1.1-Utr1-UTR010035H06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCGTGGGGACGTGTTCCGAGGAAGCCGGAGCGGGACCCGGCGGGCCCGGCAACATGGA GCCGCTGTACCAGCAAACGCACAAGCAGGTCCACGAGATCCAGTCTCACATGGGACGCCT GGAGACGGCAGACAAGCAGTCTGTGCACCTAGTAGAAAACGAAATCCAAGCAAGCATAGA CCAGATATTCAGCCATCTAGAGCGTCTGGAGATTTTGTCCAGCAAGGAGCCCCCTAACAA AAGACAGAATGCCAAACTTCGTGTTGACCAGTTAAAGTATGACGTCCAGCACCTGCAGAC TGCCCTCAGAAACTTCCAGCAGCGACGATACACAAGGGAGCAGCAAGAGAGACAGCGAGA GGAGCTTCTGTCCCGCACCTTCACCACAAATGACTCTGACACCACCATACCAATGGATGA ATCACTGCAGTTTAACTCCTCCCTCCAGAAAATTCACCACGGCATGGATGACCTCATTGG AGGCGGGCACAGTATTCTGGAGGGACTGAGGGCCCAGAGACTGACCTTGAAGGGGACGCA GAAGAAGATCCTCGACATCGCCAACATGCTGGGCTTGTCCAACACGGTGATGCGGCTCAT TGAGAAGCGGGCTTTCCAGGACAAGTACTTCATGATCGGTGGGATGCTGCTCACCTGTGT GGTCATGTTCCTCGCGGTGCAGTACCTGACCTGAGCCAGCCGGGCCCAGCGGCTCGACCG GGCTCCTGCTGCGGGAGAGCGTGTGTGAGTGTGTGCGCGAGAGAGGAGGGGGGCCCAGGG GCTGCCTGGCGAAGCGTTTGCCCGTCTTAACTGTGACGACCGCTCGGAAATAATTGTGAT TTGTAACCTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCGTGGGGACGTGTTCCGAGGAAGCCGGAGCGGGACCCGGCGGGCCCGGCAACATGGA GCCGCTGTACCAGCAAACGCACAAGCAGGTCCACGAGATCCAGTCTCACATGGGACGCCT GGAGACGGCAGACAAGCAGTCTGTGCACCTAGTAGAAAACGAAATCCAAGCAAGCATAGA CCAGATATTCAGCCATCTAGAGCGTCTGGAGATTTTGTCCAGCAAGGAGCCCCCTAACAA AAGACAGAATGCCAAACTTCGTGTTGACCAGTTAAAGTATGACGTCCAGCACCTGCAGAC TGCCCTCAGAAACTTCCAGCAGCGACGATACACAAGGGAGCAGCAAGAGAGACAGCGAGA GGAGCTTCTGTCCCGCACCTTCACCACAAATGACTCTGACACCACCATACCAATGGATGA ATCACTGCAGTTTAACTCCTCCCTCCAGAAAATTCACCACGGCATGGATGACCTCATTGG AGGCGGGCACAGTATTCTGGAGGGACTGAGGGCCCAGAGACTGACCTTGAAGGGGACGCA GAAGAAGATCCTCGACATCGCCAACATGCTGGGCTTGTCCAACACGGTGATGCGGCTCAT TGAGAAGCGGGCTTTCCAGGACAAGTACTTCATGATCGGTGGGATGCTGCTCACCTGTGT GGTCATGTTCCTCGCGGTGCAGTACCTGACCTGAGCCAGCCGGGCCCAGCGGCTCGACCG GGCTCCTGCTGCGGGAGAGCGTGTGTGAGTGTGTGCGCGAGAGAGGAGGGGGGCCCAGGG GCTGCCTGGCGAAGCGTTTGCCCGTCTTAACTGTGACGACCGCTCGGAAATAATTGTGAT TTGTAACCTAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 140-258, gnl|bosTau2|chr19 (41458957-41459074) | |
| 140-258, gnl|canFam2|chr9 (13288431-13288539) | |
| 140-258, gnl|canFam2|chr9 (13288540-13288396) | |
| 140-258, gnl|canFam2|chr9 (13288539-13288431) | |
| 140-258, gnl|danRer3|chr3 (33562680-33562535) | |
| 140-258, gnl|danRer3|chr3 (33562679-33562571) | |
| 140-258, gnl|dasNov1|scaffold_22895 (37864-37755) | |
| 140-258, gnl|dasNov1|scaffold_22895 (37754-37886) | |
| 140-258, gnl|dasNov1|scaffold_22895 (37755-37864) | |
| 140-258, gnl|echTel1|scaffold_309458 (39744-39636) | |
| 140-258, gnl|echTel1|scaffold_309458 (39635-39786) | |
| 140-258, gnl|echTel1|scaffold_309458 (39636-39744) | |
| 140-258, gnl|fr1|chrUn (22655148-22655290) | |
| 140-258, gnl|fr1|chrUn (22655149-22655254) | |
| 140-258, gnl|hg17|chr1 (32556768-32556876) | |
| 140-258, gnl|hg17|chr17 (23626779-23626926) | |
| 140-258, gnl|Hg17|chr17 (42363455-42363572) | |
| 140-258, gnl|hg17|chr18 (27560157-27560265) | |
| 140-258, gnl|loxAfr1|scaffold_9584 (11043-11151) | |
| 140-258, gnl|loxAfr1|scaffold_9584 (11152-11008) | |
| 140-258, gnl|loxAfr1|scaffold_9584 (11151-11043) | |
| 140-258, gnl|mm7|chr11 (103796675-103796567) | |
| 140-258, gnl|mm7|chr11 (103796566-103796722) | |
| 140-258, gnl|mm7|chr11 (103796567-103796675) | |
| 140-258, gnl|Mm7|chr11 (103796683-103796566) | |
| 140-258, gnl|monDom2|scaffold_18 (40591965-40591823) | |
| 140-258, gnl|oryCun1|scaffold_188653 (17163-17055) | |
| 140-258, gnl|oryCun1|scaffold_188653 (17054-17199) | |
| 140-258, gnl|oryCun1|scaffold_188653 (17055-17163) | |
| 140-258, gnl|panTro1|chr1 (33310653-33310545) | |
| 140-258, gnl|panTro1|chr1 (33310545-33310653) | |
| 140-258, gnl|panTro1|chr19 (26953513-26953660) | |
| 140-258, gnl|rheMac2|chr1 (35183719-35183827) | |
| 140-258, gnl|rheMac2|chr1 (35183827-35183719) | |
| 140-258, gnl|rheMac2|chr16 (23445052-23445201) | |
| 140-258, gnl|rn3|chr10 (92855107-92854999) | |
| 140-258, gnl|rn3|chr10 (92854998-92855148) | |
| 140-258, gnl|rn3|chr10 (92854999-92855107) | |
| 140-258, gnl|tetNig1|chr3 (12296154-12296049) | |
| 140-258, gnl|tetNig1|chr3 (12296049-12296157) | |
| 140-258, gnl|xenTro1|scaffold_58 (888666-888772) | |
| 140-258, gnl|xenTro1|scaffold_58 (888773-888639) | |
| 260-392, gnl|bosTau2|chr19 (41460059-41460191) | |
| 260-392, gnl|Hg17|chr17 (42364433-42364565) | |
| 260-392, gnl|Mm7|chr11 (103795754-103795622) | |
| 531-849, gnl|bosTau2|chr19 (41466932-41467248) | |
| 531-849, gnl|Hg17|chr17 (42370962-42371267) | |
| 531-849, gnl|Mm7|chr11 (103788440-103788144) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 140-258, gnl|bosTau2|chr19 (41458957-41459074) | |
| 140-258, gnl|canFam2|chr9 (13288431-13288539) | |
| 140-258, gnl|canFam2|chr9 (13288540-13288396) | |
| 140-258, gnl|canFam2|chr9 (13288539-13288431) | |
| 140-258, gnl|danRer3|chr3 (33562680-33562535) | |
| 140-258, gnl|danRer3|chr3 (33562679-33562571) | |
| 140-258, gnl|dasNov1|scaffold_22895 (37864-37755) | |
| 140-258, gnl|dasNov1|scaffold_22895 (37754-37886) | |
| 140-258, gnl|dasNov1|scaffold_22895 (37755-37864) | |
| 140-258, gnl|echTel1|scaffold_309458 (39744-39636) | |
| 140-258, gnl|echTel1|scaffold_309458 (39635-39786) | |
| 140-258, gnl|echTel1|scaffold_309458 (39636-39744) | |
| 140-258, gnl|fr1|chrUn (22655148-22655290) | |
| 140-258, gnl|fr1|chrUn (22655149-22655254) | |
| 140-258, gnl|hg17|chr1 (32556768-32556876) | |
| 140-258, gnl|hg17|chr17 (23626779-23626926) | |
| 140-258, gnl|Hg17|chr17 (42363455-42363572) | |
| 140-258, gnl|hg17|chr18 (27560157-27560265) | |
| 140-258, gnl|loxAfr1|scaffold_9584 (11043-11151) | |
| 140-258, gnl|loxAfr1|scaffold_9584 (11152-11008) | |
| 140-258, gnl|loxAfr1|scaffold_9584 (11151-11043) | |
| 140-258, gnl|mm7|chr11 (103796675-103796567) | |
| 140-258, gnl|mm7|chr11 (103796566-103796722) | |
| 140-258, gnl|mm7|chr11 (103796567-103796675) | |
| 140-258, gnl|Mm7|chr11 (103796683-103796566) | |
| 140-258, gnl|monDom2|scaffold_18 (40591965-40591823) | |
| 140-258, gnl|oryCun1|scaffold_188653 (17163-17055) | |
| 140-258, gnl|oryCun1|scaffold_188653 (17054-17199) | |
| 140-258, gnl|oryCun1|scaffold_188653 (17055-17163) | |
| 140-258, gnl|panTro1|chr1 (33310653-33310545) | |
| 140-258, gnl|panTro1|chr1 (33310545-33310653) | |
| 140-258, gnl|panTro1|chr19 (26953513-26953660) | |
| 140-258, gnl|rheMac2|chr1 (35183719-35183827) | |
| 140-258, gnl|rheMac2|chr1 (35183827-35183719) | |
| 140-258, gnl|rheMac2|chr16 (23445052-23445201) | |
| 140-258, gnl|rn3|chr10 (92855107-92854999) | |
| 140-258, gnl|rn3|chr10 (92854998-92855148) | |
| 140-258, gnl|rn3|chr10 (92854999-92855107) | |
| 140-258, gnl|tetNig1|chr3 (12296154-12296049) | |
| 140-258, gnl|tetNig1|chr3 (12296049-12296157) | |
| 140-258, gnl|xenTro1|scaffold_58 (888666-888772) | |
| 140-258, gnl|xenTro1|scaffold_58 (888773-888639) | |
| 260-392, gnl|bosTau2|chr19 (41460059-41460191) | |
| 260-392, gnl|Hg17|chr17 (42364433-42364565) | |
| 260-392, gnl|Mm7|chr11 (103795754-103795622) | |
| 531-849, gnl|bosTau2|chr19 (41466932-41467248) | |
| 531-849, gnl|Hg17|chr17 (42370962-42371267) | |
| 531-849, gnl|Mm7|chr11 (103788440-103788144) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| rec (0.17307) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| ebs (0.118301) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| rec (0.17307) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| ebs (0.118301) |