Non-Coding RNA Search

Ss1.1-Utr1-UTR010036A07.5

Sequence:


               
               GGCGGGGCGTGCGCGGGACAAAGGGAAGCGAGGCCGGAGCTGCGGGCGCTTTTTCTGCCC
GCGGTGTCTCAGATTCATTCTTAAGGAACTGAGAACTTAATCTTCCAAAATGTCAAAAAG
ACCATCTTATGCCCCACCTCCCACCCCAGCTCCTGCAACACAAATGCCCAGCACACCAGG
GTTTGTGGGATACAATCCATACAGTCATCTCGCCTACAACAACTACAGGCTGGGAGGGAA
CCCGGGCACCAACAGCCGGGTCACGGCATCCTCTGGTATTACGATTCCAAAACCCCCAAA
GCCACCAGATAAGCCGCTGATGCCCTACATGAGGTACAGCAGAAAGGTCTGGGACCAAGT
AAAGGCTTCCAACCCTGACCTAAAGTTGTGGGAGATTGGCAAGATTATTGGTGGCATGTG
GCGAGATCTCACTGATGAAGAAAAACAAGAATATTTAAACGAATACGAAGCAGAAAAGAT
AGAGTACAATGAATCTATGAAGGCCTATCACAATTCCCCCGCATACCTCGCTTACATAAA
TGCAAAAAGTCGTGCAGAAGCTGCTTTAGAGGAAGAAAGTCGACAGAGGCAGTCTCGCAT
GGAGAAAGGAGAACCTTACATGAGCATTCAGCCTGCTGAAGATCCAGATGATTATGATGA
TGGCTTTTCAATGAAGCATACAGCCACTGCCCGTTTCCAGAGAAACCACCGCCTCATCAG
TGAAATCCTCAGTGAGAGTGTGGTGCCAGACGTCCGGTCTGTTGTCACAACAGCTAGAAT
GCAGGTCCTCAAACGACAGGTCCAGTCCTTAATGGTTCATCAGCGAAAGCTGGAAGCTGA
ACTTCTTCAAATAGAGGAGCGACATCAGGAAAAGAAGAGGAAATTCCTGGAAAGCACAGA
TTCATTTAATAATGAACTTAAAAGGTTGTGTGGTTTGAAAGTAGAAGTGGATATGGAAAA
AATTGCAGCTGAAATTGCACAGGCCGAGGAACAGGCTCGCAAAAGGCAGGAGGAAAGGGA
GAAAGAGGCAGCCGAGCAAGCCGAGCGCAGCCAGAGCAGTATCGTTCCTGAGGAAGAGCA
AGCAGCTAATAAGACGGAAGAAAAGAAGGAAGACGAAAGCATGCCAGTGGAGACAGAGGA
GACACACCTGGAAGAAACGACAGAAAGCCAGCAGAACGGGGAAGAAGGCACGTCTACTCC
TGAGGACAAGGAGAGCGGGCAGGAGGGGGTGGACAGTATGGCAGAGGAAGGGACCAGTGA
CAGTAACACTGGCTCAGAGAGCAACAGCGCAACCGCGGAGGAACCACCAACGGATCCCGT
ACCAGAAGACGAGAAAAAAGAATAACTGTTGCCTTGTTTTATGTGTTCTAAATACTTTTT
TAAATGAAAATGTGTTTTTTGCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGGGCGTGCGCGGGACAAAGGGAAGCGAGGCCGGAGCTGCGGGCGCTTTTTCTGCCC
GCGGTGTCTCAGATTCATTCTTAAGGAACTGAGAACTTAATCTTCCAAAATGTCAAAAAG
ACCATCTTATGCCCCACCTCCCACCCCAGCTCCTGCAACACAAATGCCCAGCACACCAGG
GTTTGTGGGATACAATCCATACAGTCATCTCGCCTACAACAACTACAGGCTGGGAGGGAA
CCCGGGCACCAACAGCCGGGTCACGGCATCCTCTGGTATTACGATTCCAAAACCCCCAAA
GCCACCAGATAAGCCGCTGATGCCCTACATGAGGTACAGCAGAAAGGTCTGGGACCAAGT
AAAGGCTTCCAACCCTGACCTAAAGTTGTGGGAGATTGGCAAGATTATTGGTGGCATGTG
GCGAGATCTCACTGATGAAGAAAAACAAGAATATTTAAACGAATACGAAGCAGAAAAGAT
AGAGTACAATGAATCTATGAAGGCCTATCACAATTCCCCCGCATACCTCGCTTACATAAA
TGCAAAAAGTCGTGCAGAAGCTGCTTTAGAGGAAGAAAGTCGACAGAGGCAGTCTCGCAT
GGAGAAAGGAGAACCTTACATGAGCATTCAGCCTGCTGAAGATCCAGATGATTATGATGA
TGGCTTTTCAATGAAGCATACAGCCACTGCCCGTTTCCAGAGAAACCACCGCCTCATCAG
TGAAATCCTCAGTGAGAGTGTGGTGCCAGACGTCCGGTCTGTTGTCACAACAGCTAGAAT
GCAGGTCCTCAAACGACAGGTCCAGTCCTTAATGGTTCATCAGCGAAAGCTGGAAGCTGA
ACTTCTTCAAATAGAGGAGCGACATCAGGAAAAGAAGAGGAAATTCCTGGAAAGCACAGA
TTCATTTAATAATGAACTTAAAAGGTTGTGTGGTTTGAAAGTAGAAGTGGATATGGAAAA
AATTGCAGCTGAAATTGCACAGGCCGAGGAACAGGCTCGCAAAAGGCAGGAGGAAAGGGA
GAAAGAGGCAGCCGAGCAAGCCGAGCGCAGCCAGAGCAGTATCGTTCCTGAGGAAGAGCA
AGCAGCTAATAAGACGGAAGAAAAGAAGGAAGACGAAAGCATGCCAGTGGAGACAGAGGA
GACACACCTGGAAGAAACGACAGAAAGCCAGCAGAACGGGGAAGAAGGCACGTCTACTCC
TGAGGACAAGGAGAGCGGGCAGGAGGGGGTGGACAGTATGGCAGAGGAAGGGACCAGTGA
CAGTAACACTGGCTCAGAGAGCAACAGCGCAACCGCGGAGGAACCACCAACGGATCCCGT
ACCAGAAGACGAGAAAAAAGAATAACTGTTGCCTTGTTTTATGTGTTCTAAATACTTTTT
TAAATGAAAATGTGTTTTTTGCGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               SMCE1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               SMCE1_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               140-256, + strand, RNAz p=0.818195

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               140-256, + strand, RNAz p=0.818195

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               64-429, gnl|bosTau2|chr26 (13562340-13561988)
               

               
               64-429, gnl|Hg17|chr10 (102931741-102931391)
               

               
               64-429, gnl|Mm7|chr13 (62794348-62793986)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-429, gnl|bosTau2|chr26 (13562340-13561988)
               

               
               64-429, gnl|Hg17|chr10 (102931741-102931391)
               

               
               64-429, gnl|Mm7|chr13 (62794348-62793986)

Expressed library(ies): 27 entry(ies)

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Expressed library(ies): 27 entry(ies)

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               elu (0.770713)
               

               
               cmu (0.55918)
               

               
               isp (0.451128)
               

               
               lnt (0.426925)
               

               
               cki (0.330469)
               

               
               spl (0.286369)
               

               
               ssp (0.271039)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.770713)
               

               
               cmu (0.55918)
               

               
               isp (0.451128)
               

               
               lnt (0.426925)
               

               
               cki (0.330469)
               

               
               spl (0.286369)
               

               
               ssp (0.271039)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	64-429, gnl\|bosTau2\|chr26 (13562340-13561988)
	64-429, gnl\|Hg17\|chr10 (102931741-102931391)
	64-429, gnl\|Mm7\|chr13 (62794348-62793986)

	elu (0.770713)
	cmu (0.55918)
	isp (0.451128)
	lnt (0.426925)
	cki (0.330469)
	spl (0.286369)
	ssp (0.271039)
	mgp (0.230681)
	tes (0.207814)
	jej (0.197844)
	fcc (0.197785)
	sto (0.179824)
	fty (0.17584)
	rec (0.17307)
	cut (0.169924)
	pty (0.142714)
	pla (0.133672)
	lyg (0.133103)
	cov (0.132153)
	thg (0.126791)
	tra (0.123092)
	eep (0.122564)
	eru (0.120048)
	med (0.116252)
	cbl (0.114797)
	nbm (0.0993246)
	ldo (0.0970026)