Non-Coding RNA Search

Ss1.1-Utr1-UTR010036C03.5

Sequence:


               
               CCGGCCTGGGAACTCAGCGGGAGGACTTGAGGGGGCGGACTCTGGCCTGCGAGAGGACAT
GGCAGCCGTGAGGCCTGGCCTGGGACGGGTTGTCCCTGGATCATCCATCCTTTTCCTGTG
TGACATGCAGGAGAAGTTCCGCCACACCTTGTACTTTCCCCAGATCGTCTCTGTGGCTGC
CCGCATGCTCAAGGTGGCCCGGCTGCTGGATGTGCCTGTGGTGCTGACTGAGCAGTACCC
GCAAGGCCTGGGGCCCACGGTACCCGAGCTGGGGGCCAAGGGCCTGCAGCCACGGCCCAA
GACCTGCTTCAGCATGGTGCCTGTGGTGCAACACGAGCTGGATGCGCGGCCCCAGCTGCG
CTCTGTACTCCTGTGTGGCTTGGAGACACAAGCCTGTATCTTGCACACTGCCCTGGATCT
CCTGGACCAAGGGCTGCAGGTCCATGTGGTAGTAGATGCCTGCACCTCCCGCAGCCAGGT
GGACCGGCTGGTGGCTCTGTCCCGGATGCGGCAGAGCGGCGCCTTTCTCTCCACCAGTGA
GGGGCTCATTCTGCAGCTCGTGGGTGATGCCGCCCATCCCCAGTTCAAGGAGATCCAAAA
GATCATCAAGGAGCCTACCCCAGACAGCGGGCTGCTGGGCCTCTTCCATGGCCAGAACCC
CCTCTTCCGCTGAACTCCCCACCCTGCCTGGAGGGGAGATGTCCCCCTTGTCACTGGGAC
CTTGGCGGAAGTGCTCTCCCCCCATTCTTGGATCCCAAGAGTGGTGCAGTCCACCGGGAG
TACCGCCCCGTCAGGAGGGAGCTGGGTGCTGCCTTTCCATTGGACAGAAACTCCCGGAAA
TGCAAATGAGATTCTTGAAAGCCGGGCATGGATTGGCTGAGCCAAGCCAGAGGTGGGGCT
CGGCCCCGGGCCACTTCAAGGTGTGGAAAGGGGAGGGGGTGGGAGTGTCACAGACTGTGT
GGGACCTGGGCTCCGGGAATAAACATTGATGTGACTGTGAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGCCTGGGAACTCAGCGGGAGGACTTGAGGGGGCGGACTCTGGCCTGCGAGAGGACAT
GGCAGCCGTGAGGCCTGGCCTGGGACGGGTTGTCCCTGGATCATCCATCCTTTTCCTGTG
TGACATGCAGGAGAAGTTCCGCCACACCTTGTACTTTCCCCAGATCGTCTCTGTGGCTGC
CCGCATGCTCAAGGTGGCCCGGCTGCTGGATGTGCCTGTGGTGCTGACTGAGCAGTACCC
GCAAGGCCTGGGGCCCACGGTACCCGAGCTGGGGGCCAAGGGCCTGCAGCCACGGCCCAA
GACCTGCTTCAGCATGGTGCCTGTGGTGCAACACGAGCTGGATGCGCGGCCCCAGCTGCG
CTCTGTACTCCTGTGTGGCTTGGAGACACAAGCCTGTATCTTGCACACTGCCCTGGATCT
CCTGGACCAAGGGCTGCAGGTCCATGTGGTAGTAGATGCCTGCACCTCCCGCAGCCAGGT
GGACCGGCTGGTGGCTCTGTCCCGGATGCGGCAGAGCGGCGCCTTTCTCTCCACCAGTGA
GGGGCTCATTCTGCAGCTCGTGGGTGATGCCGCCCATCCCCAGTTCAAGGAGATCCAAAA
GATCATCAAGGAGCCTACCCCAGACAGCGGGCTGCTGGGCCTCTTCCATGGCCAGAACCC
CCTCTTCCGCTGAACTCCCCACCCTGCCTGGAGGGGAGATGTCCCCCTTGTCACTGGGAC
CTTGGCGGAAGTGCTCTCCCCCCATTCTTGGATCCCAAGAGTGGTGCAGTCCACCGGGAG
TACCGCCCCGTCAGGAGGGAGCTGGGTGCTGCCTTTCCATTGGACAGAAACTCCCGGAAA
TGCAAATGAGATTCTTGAAAGCCGGGCATGGATTGGCTGAGCCAAGCCAGAGGTGGGGCT
CGGCCCCGGGCCACTTCAAGGTGTGGAAAGGGGAGGGGGTGGGAGTGTCACAGACTGTGT
GGGACCTGGGCTCCGGGAATAAACATTGATGTGACTGTGAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55727909|emb|CAH90707.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55727909|emb|CAH90707.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               743-860, - strand, RNAz p=0.925271

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               743-860, - strand, RNAz p=0.925271

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               179-403, gnl|bosTau2|chr18 (52499415-52499637)
               

               
               179-403, gnl|Hg17|chr19 (60659037-60658815)
               

               
               179-403, gnl|Mm7|chr7 (4425229-4425008)
               


               
               591-999, gnl|bosTau2|chr18 (52501757-52502163)
               

               
               591-999, gnl|Hg17|chr19 (60656569-60656164)
               

               
               591-999, gnl|Mm7|chr7 (4419351-4418942)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               179-403, gnl|bosTau2|chr18 (52499415-52499637)
               

               
               179-403, gnl|Hg17|chr19 (60659037-60658815)
               

               
               179-403, gnl|Mm7|chr7 (4425229-4425008)
               


               
               591-999, gnl|bosTau2|chr18 (52501757-52502163)
               

               
               591-999, gnl|Hg17|chr19 (60656569-60656164)
               

               
               591-999, gnl|Mm7|chr7 (4419351-4418942)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               mas (0.42061)
               

               
               cli (0.305623)
               

               
               eje (0.296501)
               

               
               ese (0.253004)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)
               

               
               cli (0.305623)
               

               
               eje (0.296501)
               

               
               ese (0.253004)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

	179-403, gnl\|bosTau2\|chr18 (52499415-52499637)
	179-403, gnl\|Hg17\|chr19 (60659037-60658815)
	179-403, gnl\|Mm7\|chr7 (4425229-4425008)

	591-999, gnl\|bosTau2\|chr18 (52501757-52502163)
	591-999, gnl\|Hg17\|chr19 (60656569-60656164)
	591-999, gnl\|Mm7\|chr7 (4419351-4418942)

	mas (0.42061)
	cli (0.305623)
	eje (0.296501)
	ese (0.253004)
	nms (0.213858)
	fcc (0.197785)
	ton (0.1755)
	hyp (0.142837)
	pty (0.142714)
	lnt (0.142308)
	nca (0.136874)
	ute (0.132784)
	cov (0.132153)
	ebs (0.118301)
	jej (0.0989218)