Ss1.1-Utr1-UTR010036F02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCTTCCTCCTCTTTTATTTCCTTCCCGCGCAGCAGGTGAGCGCAGGCTCAGGGGTGCT CTGCATCCTCCACAGCGAAGGTGAAGGGGCTCAGCTTGTAGCCGGTGCCCGCGTAGAACT TGTTCTGGAACTCCACCCAATGCAGCCGCAGCGCGTGCAGGAAGGCCGAGAGTCCCTCCA TCACCAGCAGGATGGCCACGGTCATCACGGCGAAGGCGGCAAAGATGGGGACCAGCACCA CGGCCACCACACCCATCTCGTCACTCAGGCCCAGGCCCACGCGCATCACCATGGCCCACA GCACCTCTGACAGCTGGGCGTGGGCCAGGCTCAGGGCCCAGAGGCGCAGGTAGGAGGCCG TGTTGGAGATGCAGCCCAGGCAGAACTCGATGGTGTGTATGGCCTGGTGCATGAACACCT CGGACGCGACAAACTCAGCCTCCTCCCGGTCCCCCGGGCACTCTGCCTTCTCCTCATCCA AGCCCTGGCTGGACACGGACACAGACGCATCCAGAAGCCCAGTCTTGTCCTCGTCCTCTA CCAGCTGTCGCCTCCGCGCGTGACGGCGGTGCTGCTGCCGCAGGAACAGAGGCGTGCCGA GCAGCAGGATGGGCACCATGGCCAGAGCCAGGACCACCAGCACGGACTGCACCACCTCCT GCCCGGAGAAAAGCGGCCTGTTGGTGGCGCTGCGGGAGAAGAGGAACATGTTGATGAAGT GGATGAGGACGCTGGGGGCCGAGGCGGCGTCGGCGGCCGTGAACCGCAGCCACTTGTAGA TGATCAGGAAGACGAGGTAGCCGAACAGCGCCAGCAGGAAGACCAGCTCGGGGACGGTCT CCAGCAGCAGCCGGTGCCACTGGCCAAAGTGCATGTGGTTGAAGACCCCCAGGGCCACCC CGAAGGTCATGTGGGTGACCCCCAGGAGGACAGACATCTTCATCTTGAAGGAGTTGAGGA AGCTCAGGTGGTTGGCGGCCAGGCTCCAGACCGGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCTTCCTCCTCTTTTATTTCCTTCCCGCGCAGCAGGTGAGCGCAGGCTCAGGGGTGCT CTGCATCCTCCACAGCGAAGGTGAAGGGGCTCAGCTTGTAGCCGGTGCCCGCGTAGAACT TGTTCTGGAACTCCACCCAATGCAGCCGCAGCGCGTGCAGGAAGGCCGAGAGTCCCTCCA TCACCAGCAGGATGGCCACGGTCATCACGGCGAAGGCGGCAAAGATGGGGACCAGCACCA CGGCCACCACACCCATCTCGTCACTCAGGCCCAGGCCCACGCGCATCACCATGGCCCACA GCACCTCTGACAGCTGGGCGTGGGCCAGGCTCAGGGCCCAGAGGCGCAGGTAGGAGGCCG TGTTGGAGATGCAGCCCAGGCAGAACTCGATGGTGTGTATGGCCTGGTGCATGAACACCT CGGACGCGACAAACTCAGCCTCCTCCCGGTCCCCCGGGCACTCTGCCTTCTCCTCATCCA AGCCCTGGCTGGACACGGACACAGACGCATCCAGAAGCCCAGTCTTGTCCTCGTCCTCTA CCAGCTGTCGCCTCCGCGCGTGACGGCGGTGCTGCTGCCGCAGGAACAGAGGCGTGCCGA GCAGCAGGATGGGCACCATGGCCAGAGCCAGGACCACCAGCACGGACTGCACCACCTCCT GCCCGGAGAAAAGCGGCCTGTTGGTGGCGCTGCGGGAGAAGAGGAACATGTTGATGAAGT GGATGAGGACGCTGGGGGCCGAGGCGGCGTCGGCGGCCGTGAACCGCAGCCACTTGTAGA TGATCAGGAAGACGAGGTAGCCGAACAGCGCCAGCAGGAAGACCAGCTCGGGGACGGTCT CCAGCAGCAGCCGGTGCCACTGGCCAAAGTGCATGTGGTTGAAGACCCCCAGGGCCACCC CGAAGGTCATGTGGGTGACCCCCAGGAGGACAGACATCTTCATCTTGAAGGAGTTGAGGA AGCTCAGGTGGTTGGCGGCCAGGCTCCAGACCGGGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 137-315, gnl|bosTau2|chr19 (38855419-38855591) | |
| 137-315, gnl|canFam2|chr9 (23747203-23746999) | |
| 137-315, gnl|danRer3|chr24 (5330367-5330175) | |
| 137-315, gnl|dasNov1|scaffold_23588 (10467-10651) | |
| 137-315, gnl|echTel1|scaffold_103625 (5454-5235) | |
| 137-315, gnl|fr1|chrUn (208871399-208871206) | |
| 137-315, gnl|galGal2|chr27_random (223423-223200) | |
| 137-315, gnl|hg17|chr17 (37919819-37920036) | |
| 137-315, gnl|Hg17|chr17 (37920005-37919833) | |
| 137-315, gnl|loxAfr1|scaffold_19184 (3477-3272) | |
| 137-315, gnl|mm7|chr11 (101164459-101164671) | |
| 137-315, gnl|Mm7|chr11 (101164645-101164473) | |
| 137-315, gnl|monDom2|scaffold_18 (52961859-52962070) | |
| 137-315, gnl|oryCun1|scaffold_118183 (850-637) | |
| 137-315, gnl|panTro1|chr9_random (32535000-32534815) | |
| 137-315, gnl|rheMac2|chr16 (52643072-52643289) | |
| 137-315, gnl|rn3|chr10 (90079124-90079336) | |
| 137-315, gnl|tetNig1|chr3 (12578190-12578000) | |
| 137-315, gnl|xenTro1|scaffold_1084 (72649-72458) | |
| 316-435, gnl|bosTau2|chr29 (39488158-39488277) | |
| 316-435, gnl|Hg17|chr11 (67574297-67574178) | |
| 316-435, gnl|Mm7|chr19 (3791410-3791529) | |
| 655-872, gnl|bosTau2|chr29 (39488980-39489197) | |
| 655-872, gnl|canFam2|chr18 (52812039-52811857) | |
| 655-872, gnl|danRer3|chr19 (62713335-62713162) | |
| 655-872, gnl|dasNov1|scaffold_87055 (4879-5060) | |
| 655-872, gnl|echTel1|scaffold_299163 (5291-5106) | |
| 655-872, gnl|fr1|chrUn (42175966-42176148) | |
| 655-872, gnl|galGal2|chr5 (38995-39177) | |
| 655-872, gnl|hg17|chr11 (67573114-67573296) | |
| 655-872, gnl|Hg17|chr11 (67573341-67573124) | |
| 655-872, gnl|loxAfr1|scaffold_22212 (7474-7656) | |
| 655-872, gnl|mm7|chr19 (3792499-3792317) | |
| 655-872, gnl|Mm7|chr19 (3792270-3792487) | |
| 655-872, gnl|monDom2|scaffold_226 (451941-451759) | |
| 655-872, gnl|oryCun1|scaffold_82676 (5586-5404) | |
| 655-872, gnl|panTro1|chr9_random (32536413-32536231) | |
| 655-872, gnl|rheMac2|chr14 (6671561-6671379) | |
| 655-872, gnl|rn3|chr1 (206575157-206574975) | |
| 655-872, gnl|tetNig1|chr4 (1469060-1468878) | |
| 655-872, gnl|xenTro1|scaffold_332 (1199323-1199141) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 137-315, gnl|bosTau2|chr19 (38855419-38855591) | |
| 137-315, gnl|canFam2|chr9 (23747203-23746999) | |
| 137-315, gnl|danRer3|chr24 (5330367-5330175) | |
| 137-315, gnl|dasNov1|scaffold_23588 (10467-10651) | |
| 137-315, gnl|echTel1|scaffold_103625 (5454-5235) | |
| 137-315, gnl|fr1|chrUn (208871399-208871206) | |
| 137-315, gnl|galGal2|chr27_random (223423-223200) | |
| 137-315, gnl|hg17|chr17 (37919819-37920036) | |
| 137-315, gnl|Hg17|chr17 (37920005-37919833) | |
| 137-315, gnl|loxAfr1|scaffold_19184 (3477-3272) | |
| 137-315, gnl|mm7|chr11 (101164459-101164671) | |
| 137-315, gnl|Mm7|chr11 (101164645-101164473) | |
| 137-315, gnl|monDom2|scaffold_18 (52961859-52962070) | |
| 137-315, gnl|oryCun1|scaffold_118183 (850-637) | |
| 137-315, gnl|panTro1|chr9_random (32535000-32534815) | |
| 137-315, gnl|rheMac2|chr16 (52643072-52643289) | |
| 137-315, gnl|rn3|chr10 (90079124-90079336) | |
| 137-315, gnl|tetNig1|chr3 (12578190-12578000) | |
| 137-315, gnl|xenTro1|scaffold_1084 (72649-72458) | |
| 316-435, gnl|bosTau2|chr29 (39488158-39488277) | |
| 316-435, gnl|Hg17|chr11 (67574297-67574178) | |
| 316-435, gnl|Mm7|chr19 (3791410-3791529) | |
| 655-872, gnl|bosTau2|chr29 (39488980-39489197) | |
| 655-872, gnl|canFam2|chr18 (52812039-52811857) | |
| 655-872, gnl|danRer3|chr19 (62713335-62713162) | |
| 655-872, gnl|dasNov1|scaffold_87055 (4879-5060) | |
| 655-872, gnl|echTel1|scaffold_299163 (5291-5106) | |
| 655-872, gnl|fr1|chrUn (42175966-42176148) | |
| 655-872, gnl|galGal2|chr5 (38995-39177) | |
| 655-872, gnl|hg17|chr11 (67573114-67573296) | |
| 655-872, gnl|Hg17|chr11 (67573341-67573124) | |
| 655-872, gnl|loxAfr1|scaffold_22212 (7474-7656) | |
| 655-872, gnl|mm7|chr19 (3792499-3792317) | |
| 655-872, gnl|Mm7|chr19 (3792270-3792487) | |
| 655-872, gnl|monDom2|scaffold_226 (451941-451759) | |
| 655-872, gnl|oryCun1|scaffold_82676 (5586-5404) | |
| 655-872, gnl|panTro1|chr9_random (32536413-32536231) | |
| 655-872, gnl|rheMac2|chr14 (6671561-6671379) | |
| 655-872, gnl|rn3|chr1 (206575157-206574975) | |
| 655-872, gnl|tetNig1|chr4 (1469060-1468878) | |
| 655-872, gnl|xenTro1|scaffold_332 (1199323-1199141) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cga (0.279096) | |
| nco (0.161734) | |
| csp (0.161186) | |
| pty (0.142714) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.279096) | |
| nco (0.161734) | |
| csp (0.161186) | |
| pty (0.142714) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) |