Non-Coding RNA Search

Ss1.1-Utr1-UTR010036F11.5

Sequence:


               
               CGACCCACCGAGCGAAGCCAGGGATCGAACCTGCATCCCTCATGGACACTAGTCAGGTTC
ATTTCCGCTGCGCCACAATGGGAACTCCCCACAGTGCAATTTTAATGATCTCAGACAGGG
AACAGCAGAGGGTGGAGAGAGCGGAAGGCCATGTGGGAAACCCAAAAGCTCGCGCTCATG
TCTCTTTGCTCCCTGACAAACCAGCAGGGCGGTGGGAAGTGGGAGTTCTTGGCTCGTGGG
GCGCAGCTCCTTGAAACCTTCCAGTAATTGCTTTATGCTGGGAGAGATCTGTGGAAGCAG
GGGGCCCTCTGGTGGCCGTCGGGGGTGGCTGCAGAGAGGCGGCAAAGGACGCGGAAGGCA
CAGCTCGGGGATCAGGGGAGGGACCCCAGGCTTGGGTCTAGTCCACACCGGAAGAGTTGG
TCAGGTAGAAGGGGCGGATGACGGCTTGGAAGCTGCTGAAGAACCCCGCCGGGCAGGGGA
AGAAGGCGGCACTCCGGGAGCTGTTGGTGCCCAGGGCACTGGGGATCAGGGCCTTCGTGT
CCTTGAAGGCGGCGATGTCCGCCACGAAGCTCCCCTCGCAGAGCATCAGGGCCTTGTTTT
CGTAGCCAATGGTGGGATCCAAGGAGCTGGTCTTGGAGAGGCCCAGGAGCGGGGGCTCGT
CGGGGGAGCACGAGAACCCGTAGTTCCAGCAGCTCTGGACGGTGGGGAGGTAGACGAAGG
ACCAGGAGACGGAGCTGTCCTGGAAGAGGAAGCTGGGGTGCTTGGGGGTCTGGAAGGACT
CGTAGGGGCTGTACGCGGAGGCCGTCTGGTTGGCGCTCCAGCGGGGCGAGGTGTACAGCC
GGGGCCGGTAGGCGTCCCCGCTGAGGTTCAGGCCCCTGTACTGGGCCAGCAGCTGGAAAG
GCACCGTGTGGAACTCCAGGGCCTGCAGAGTCTTCCTCTGGAAGAGCGCCTCGTGGCTCC
GGTACAGGGACAGGTTAAACTGCAGCTGGAACAGGTCCCTGGGCGGCATCATGGGGAAGC
GCACCTTCTCCACCAAGCCCTCCACTTCCCCGTGGGAGGCGCCCCTCTCCCGGCTCCACA
CGTCCAGGGCCGCGAGCAGGGCCAGCTCGCTGGACACGACCAGCTCGCTCCTGGCGAGCA
AGCTGTGGAGCAGGGCTGCGGGGACGCTCGGCCAGGCCTCGGCCTGCGTCAGGGCCTCGA
AGTTCCAGGTCAGGAACTGCACGCAGACCTCCTCCAGCACGGGGTCCCTGGAGGCCAGGG
CGTACGCGTAGAGGTCCAGGGGCGCCCGGAAAGAGCGGTCCTGCGGGATGAGGACGGCAA
AGAGGTGCGCGCAGAAGCTCTGCAGCTGCTGGGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACCCACCGAGCGAAGCCAGGGATCGAACCTGCATCCCTCATGGACACTAGTCAGGTTC
ATTTCCGCTGCGCCACAATGGGAACTCCCCACAGTGCAATTTTAATGATCTCAGACAGGG
AACAGCAGAGGGTGGAGAGAGCGGAAGGCCATGTGGGAAACCCAAAAGCTCGCGCTCATG
TCTCTTTGCTCCCTGACAAACCAGCAGGGCGGTGGGAAGTGGGAGTTCTTGGCTCGTGGG
GCGCAGCTCCTTGAAACCTTCCAGTAATTGCTTTATGCTGGGAGAGATCTGTGGAAGCAG
GGGGCCCTCTGGTGGCCGTCGGGGGTGGCTGCAGAGAGGCGGCAAAGGACGCGGAAGGCA
CAGCTCGGGGATCAGGGGAGGGACCCCAGGCTTGGGTCTAGTCCACACCGGAAGAGTTGG
TCAGGTAGAAGGGGCGGATGACGGCTTGGAAGCTGCTGAAGAACCCCGCCGGGCAGGGGA
AGAAGGCGGCACTCCGGGAGCTGTTGGTGCCCAGGGCACTGGGGATCAGGGCCTTCGTGT
CCTTGAAGGCGGCGATGTCCGCCACGAAGCTCCCCTCGCAGAGCATCAGGGCCTTGTTTT
CGTAGCCAATGGTGGGATCCAAGGAGCTGGTCTTGGAGAGGCCCAGGAGCGGGGGCTCGT
CGGGGGAGCACGAGAACCCGTAGTTCCAGCAGCTCTGGACGGTGGGGAGGTAGACGAAGG
ACCAGGAGACGGAGCTGTCCTGGAAGAGGAAGCTGGGGTGCTTGGGGGTCTGGAAGGACT
CGTAGGGGCTGTACGCGGAGGCCGTCTGGTTGGCGCTCCAGCGGGGCGAGGTGTACAGCC
GGGGCCGGTAGGCGTCCCCGCTGAGGTTCAGGCCCCTGTACTGGGCCAGCAGCTGGAAAG
GCACCGTGTGGAACTCCAGGGCCTGCAGAGTCTTCCTCTGGAAGAGCGCCTCGTGGCTCC
GGTACAGGGACAGGTTAAACTGCAGCTGGAACAGGTCCCTGGGCGGCATCATGGGGAAGC
GCACCTTCTCCACCAAGCCCTCCACTTCCCCGTGGGAGGCGCCCCTCTCCCGGCTCCACA
CGTCCAGGGCCGCGAGCAGGGCCAGCTCGCTGGACACGACCAGCTCGCTCCTGGCGAGCA
AGCTGTGGAGCAGGGCTGCGGGGACGCTCGGCCAGGCCTCGGCCTGCGTCAGGGCCTCGA
AGTTCCAGGTCAGGAACTGCACGCAGACCTCCTCCAGCACGGGGTCCCTGGAGGCCAGGG
CGTACGCGTAGAGGTCCAGGGGCGCCCGGAAAGAGCGGTCCTGCGGGATGAGGACGGCAA
AGAGGTGCGCGCAGAAGCTCTGCAGCTGCTGGGCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61820401|ref|XP_609623.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61820401|ref|XP_609623.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               252-1355, gnl|bosTau2|chr19 (46228502-46229623)
               

               
               252-1355, gnl|Hg17|chr17 (74479087-74480306)
               

               
               252-1355, gnl|Mm7|chr11 (118502007-118503092)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               252-1355, gnl|bosTau2|chr19 (46228502-46229623)
               

               
               252-1355, gnl|Hg17|chr17 (74479087-74480306)
               

               
               252-1355, gnl|Mm7|chr11 (118502007-118503092)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cag (1.05836)
               

               
               sin (0.349895)
               

               
               csp (0.322373)
               

               
               cly (0.241284)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               pgl (0.118483)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (1.05836)
               

               
               sin (0.349895)
               

               
               csp (0.322373)
               

               
               cly (0.241284)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               pgl (0.118483)

	252-1355, gnl\|bosTau2\|chr19 (46228502-46229623)
	252-1355, gnl\|Hg17\|chr17 (74479087-74480306)
	252-1355, gnl\|Mm7\|chr11 (118502007-118503092)

	cag (1.05836)
	sin (0.349895)
	csp (0.322373)
	cly (0.241284)
	cty (0.20816)
	fli (0.202881)
	ill (0.175593)
	nje (0.16592)
	hyp (0.142837)
	che (0.136314)
	cov (0.132153)
	pgl (0.118483)