Non-Coding RNA Search

Ss1.1-Utr1-UTR010036G02.5

Sequence:


               
               TCCCCACTCATCCACGCCGTGGAAAACAACAGCCTTAGCATGGTGCAGCTGCTGCTGCAG
CACGGCGCCAACGTGAACGCGCAGATGTACTCCGGCAGCTCCGCTCTGCACTCGGCGTCG
GGCCGCGGGCTCCTCCCGCTCGTGCGCACGCTGGTCCGCAGCGGCGCGGACAGCGGCCTC
AAGAACTGCCACAACGACACGCCGCTCATGGTGGCGGGAGGCGAGCGGGTCATCGACATC
CTGAGGGGGAAGGCTACACGGCCTGCTCCTGCATCCCAGCCGGAGCCCTCCCCCGACCGG
AGCGCCACCACCTCCCCTGAGAGCGGCAGCCGCCTGAGCTCCAACGGTCTTCTGTCGGCA
TCACCACCCTCCTCGCCCTCCCAGTCTCCCCCCAAGGACACCCCTGGATTCTCCATGGCT
CCCCCCAGTTTCTTCCTTCCTCCCTCATCTCCACCTACCTTCCTGCCCTTTGCCAGGGTC
CTGCGGGCCCCTGGCCGGCCGGTGCCCCCCTCCCCAGCTCCAGGAGGCAGCTGAGTGGGA
TGGGGGGGGCAGATCTCGGACTCATGAGGGGGGACCCTGCTGCCCTGTGGGGTCAGCCCT
CCTGCAAACTGTGAAGATCTCACTCTGCCTCCCCCCGCCCCCAATCTTCTGGACCAGGAT
TTGCACAGAGGCACAGTAACTTCCCCCTCTTCTCAGCACGAATACTCCCCCAGCTGGTCC
CCTCACCCAGCCCAGGACTCTTACCCCTCTTATTCTCAGGCACCCGTCTTCCGGTCTCCC
GGCCCCAACCGGCCGGCCGTTCCTTTCCTCCTCCTCTCCCAGAGCCGGTGGAACCAAGGA
GTCCCGGCCCTCTGCTCTACCCAGATCCATGAGGAGGGAGAGCCAGGCTGTAGCCAGGCA
CTAATAACATGTAAATTATTAGGCATTTTGGTCGGATTTCTTTTGTAATAAACTATTTTT
GTACCATAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCCACTCATCCACGCCGTGGAAAACAACAGCCTTAGCATGGTGCAGCTGCTGCTGCAG
CACGGCGCCAACGTGAACGCGCAGATGTACTCCGGCAGCTCCGCTCTGCACTCGGCGTCG
GGCCGCGGGCTCCTCCCGCTCGTGCGCACGCTGGTCCGCAGCGGCGCGGACAGCGGCCTC
AAGAACTGCCACAACGACACGCCGCTCATGGTGGCGGGAGGCGAGCGGGTCATCGACATC
CTGAGGGGGAAGGCTACACGGCCTGCTCCTGCATCCCAGCCGGAGCCCTCCCCCGACCGG
AGCGCCACCACCTCCCCTGAGAGCGGCAGCCGCCTGAGCTCCAACGGTCTTCTGTCGGCA
TCACCACCCTCCTCGCCCTCCCAGTCTCCCCCCAAGGACACCCCTGGATTCTCCATGGCT
CCCCCCAGTTTCTTCCTTCCTCCCTCATCTCCACCTACCTTCCTGCCCTTTGCCAGGGTC
CTGCGGGCCCCTGGCCGGCCGGTGCCCCCCTCCCCAGCTCCAGGAGGCAGCTGAGTGGGA
TGGGGGGGGCAGATCTCGGACTCATGAGGGGGGACCCTGCTGCCCTGTGGGGTCAGCCCT
CCTGCAAACTGTGAAGATCTCACTCTGCCTCCCCCCGCCCCCAATCTTCTGGACCAGGAT
TTGCACAGAGGCACAGTAACTTCCCCCTCTTCTCAGCACGAATACTCCCCCAGCTGGTCC
CCTCACCCAGCCCAGGACTCTTACCCCTCTTATTCTCAGGCACCCGTCTTCCGGTCTCCC
GGCCCCAACCGGCCGGCCGTTCCTTTCCTCCTCCTCTCCCAGAGCCGGTGGAACCAAGGA
GTCCCGGCCCTCTGCTCTACCCAGATCCATGAGGAGGGAGAGCCAGGCTGTAGCCAGGCA
CTAATAACATGTAAATTATTAGGCATTTTGGTCGGATTTCTTTTGTAATAAACTATTTTT
GTACCATAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               425-663, - strand, RNAz p=0.98519

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               425-663, - strand, RNAz p=0.98519

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               57-230, gnl|bosTau2|chr6 (49080027-49079854)
               

               
               57-230, gnl|Hg17|chr19 (49953339-49953512)
               

               
               57-230, gnl|Mm7|chr7 (17492041-17491868)
               


               
               346-968, gnl|bosTau2|chr6 (49079214-49078576)
               

               
               346-968, gnl|Hg17|chr19 (49954524-49955141)
               

               
               346-968, gnl|Mm7|chr7 (17491431-17490836)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               57-230, gnl|bosTau2|chr6 (49080027-49079854)
               

               
               57-230, gnl|Hg17|chr19 (49953339-49953512)
               

               
               57-230, gnl|Mm7|chr7 (17492041-17491868)
               


               
               346-968, gnl|bosTau2|chr6 (49079214-49078576)
               

               
               346-968, gnl|Hg17|chr19 (49954524-49955141)
               

               
               346-968, gnl|Mm7|chr7 (17491431-17490836)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cly (0.241284)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.241284)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

	57-230, gnl\|bosTau2\|chr6 (49080027-49079854)
	57-230, gnl\|Hg17\|chr19 (49953339-49953512)
	57-230, gnl\|Mm7\|chr7 (17492041-17491868)

	346-968, gnl\|bosTau2\|chr6 (49079214-49078576)
	346-968, gnl\|Hg17\|chr19 (49954524-49955141)
	346-968, gnl\|Mm7\|chr7 (17491431-17490836)

	cly (0.241284)
	nms (0.213858)
	col (0.195008)
	nco (0.161734)
	csp (0.161186)
	cov (0.132153)
	jej (0.0989218)