Non-Coding RNA Search

Ss1.1-Utr1-UTR010036H05.5

Sequence:


               
               ATTTCCGTCAGCCTAGAGTGTCTCCGCCCTTCCCGCCTCCCTTCCTCGCAGCGTCTTAAA
CATAGGCCTCGGGCCTACTGCTCCGGGGGTACTTAGGGGGGCGGGGGGCAGGTCTGATGA
GTAACCCCTCCCCCCAAGTCCCAGAGGGAGAAGCCTCTACATCTGTCTGCCGGCCCAAGA
GTTCCATGGCCTCCACCTCCCGTCGCCAACGCCGAGAGCGTCGCTTCCGTCGTTATTTGT
CTGCAGGACGGCTGGTCCGGGCCCAAGCCCTCCTCCAGCGACACCCGGGCCTTGATGTAG
ATGCTGGGCAGCCCCCACCACTGCACCGGGCCTGTGCCCGCCACGATGCCCCTGCCCTCT
GCCTGCTTCTTCGGCTTGGGGCTGACCCTGCCCACCAGGACCGCCATGGGGACACGGCGC
TACATGCTGCTGCCCGCCAGGGCCCTGATGCCTACACGGATTTCTTCCTGCCACTGCTGA
GTCGCTGTCCCTCTGCCATGGGAATAAAGAATAAGGATGGGGAGACCCCTGGGCAGATTC
TGGGCTGGGGACCCCCCTGGGATTCTGCTGAAGAGGAGGAAGAAGATGAGGCTTCCAAGG
AACGGGAGTGGAGACAGAAACTGCAGGGAGAGCTGGAGGACGAGTGGCAGGAGGTCATTG
GAAGATTCGAAGATGATGCTTCCCACGAGACCCAGGAACCCGAGTCCTTCTCAGCCTGGT
CAGATCGCATGGCCCGGGAACATGCCCAGAAGCGCCAGCAGCAGCGTGAGACAGAGGGAG
CCTGCCGACCCCCACGGGCTGAGGGCTCCAGTCACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTCCGTCAGCCTAGAGTGTCTCCGCCCTTCCCGCCTCCCTTCCTCGCAGCGTCTTAAA
CATAGGCCTCGGGCCTACTGCTCCGGGGGTACTTAGGGGGGCGGGGGGCAGGTCTGATGA
GTAACCCCTCCCCCCAAGTCCCAGAGGGAGAAGCCTCTACATCTGTCTGCCGGCCCAAGA
GTTCCATGGCCTCCACCTCCCGTCGCCAACGCCGAGAGCGTCGCTTCCGTCGTTATTTGT
CTGCAGGACGGCTGGTCCGGGCCCAAGCCCTCCTCCAGCGACACCCGGGCCTTGATGTAG
ATGCTGGGCAGCCCCCACCACTGCACCGGGCCTGTGCCCGCCACGATGCCCCTGCCCTCT
GCCTGCTTCTTCGGCTTGGGGCTGACCCTGCCCACCAGGACCGCCATGGGGACACGGCGC
TACATGCTGCTGCCCGCCAGGGCCCTGATGCCTACACGGATTTCTTCCTGCCACTGCTGA
GTCGCTGTCCCTCTGCCATGGGAATAAAGAATAAGGATGGGGAGACCCCTGGGCAGATTC
TGGGCTGGGGACCCCCCTGGGATTCTGCTGAAGAGGAGGAAGAAGATGAGGCTTCCAAGG
AACGGGAGTGGAGACAGAAACTGCAGGGAGAGCTGGAGGACGAGTGGCAGGAGGTCATTG
GAAGATTCGAAGATGATGCTTCCCACGAGACCCAGGAACCCGAGTCCTTCTCAGCCTGGT
CAGATCGCATGGCCCGGGAACATGCCCAGAAGCGCCAGCAGCAGCGTGAGACAGAGGGAG
CCTGCCGACCCCCACGGGCTGAGGGCTCCAGTCACA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5SP31_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5SP31_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               173-450, gnl|bosTau2|chr23 (23218207-23218484)
               

               
               173-450, gnl|Hg17|chr6 (31623918-31624195)
               

               
               173-450, gnl|Mm7|chr17 (33331349-33331069)
               


               
               671-816, gnl|bosTau2|chr23 (23226878-23227026)
               

               
               671-816, gnl|Hg17|chr6 (31633776-31633924)
               

               
               671-816, gnl|Mm7|chr17 (33317094-33316949)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               173-450, gnl|bosTau2|chr23 (23218207-23218484)
               

               
               173-450, gnl|Hg17|chr6 (31623918-31624195)
               

               
               173-450, gnl|Mm7|chr17 (33331349-33331069)
               


               
               671-816, gnl|bosTau2|chr23 (23226878-23227026)
               

               
               671-816, gnl|Hg17|chr6 (31633776-31633924)
               

               
               671-816, gnl|Mm7|chr17 (33317094-33316949)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cag (0.151194)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               clu (0.119646)

	173-450, gnl\|bosTau2\|chr23 (23218207-23218484)
	173-450, gnl\|Hg17\|chr6 (31623918-31624195)
	173-450, gnl\|Mm7\|chr17 (33331349-33331069)

	671-816, gnl\|bosTau2\|chr23 (23226878-23227026)
	671-816, gnl\|Hg17\|chr6 (31633776-31633924)
	671-816, gnl\|Mm7\|chr17 (33317094-33316949)