Non-Coding RNA Search

Ss1.1-Utr1-UTR010037A07.5

Sequence:


               
               AGGGACCATACTGCCACCTCGGCTGCGTGGTCCTCCGGTCCGAGTCTGAGGAGCTCCGCA
GTCATGGCCAGCCACCTCGTGCTCTACACCGGTGCCAAGATGCCCATCTTGGGGCTGGGC
ACCTGGAAGTCCCCTCCAGGCAAAGTGACAGAGGCTGTGAAGGTGGCCATTGACCTTGGG
TACCGCCACATTGACTGTGCCCATGTGTACCAGAACGAGAACGAGGTGGGGCTGGGCCTC
CAGGAGAAGCTCCAAGGGCAGGTGGTGAAGCGTGAGGACCTCTTCATCGTCAGTAAGCTG
TGGTGCACAGACCATGAGAAGAACCTGGTGAAAGGGGCCTGCCAGACGACCCTCCGCAAC
CTGAAGCTGGACTACCTGGACCTCTACCTTATCCACTGGCCCACTGGCTTCAAGCCTGGC
AAGGACCCTTTCCCGCTGGATGGCGACGGCAACGTGGTTCCTGATGAGAGCGATTTTGTG
GAGACGTGGGAGGCCATGGAGGAGCTGGTGGACGAAGGGCTGGTGAAAGCCATTGGCGTC
TCCAACTTCAACCATCTGCAAGTGGAGAAGATCTTAAACAAACCTGGCCTGAAATACAAG
CCAGCCGTTAACCAGATCGAGGTCCACCCATACCTCACTCAGGAGAAGTTAATCGAATAC
TGCAAGTCCAAAGGCATCGTGGTGACTGCCTACAGCCCCCTCGGCTCTCCCGACAGGCCC
TGGGCCAAGCCTGAGGACCCTTCCCTCCTGGAGGACCCCAGGATCAAAGCGATTGCAGCC
AAGTACAATAAAACCACAGCCCAGGTTCTGATCCGGTTCCCCATGCAGAGGAACTTGATC
GTCATCCCCAAGTCCGTGACGCCTGAACGCATTGCCGAGAACTTCCAGGTCTTTGACTTT
GAACTGAGCCCTGAGGATATGAACACCTTACTGAGCTACAACAGGAACTGGAGGGTCTGT
GCCTTGATGAGCTGTGCCTCCCACAAGGATTATCCCTTTCACGAGGAATATTGAAGCTGG
GGGCGCCTGCCCTTCCCCAGGTGACCTGCTGTTTCCCTCCTCGCTTCCCCCCTGCCCAGT
GGAGCTCGGCCCCTGTCCCTCGGCAGCGGGTCAGCGACCCACCGAGGCGCCAGTGGGCGC
TTGGCCTGCATGGTGTGGGGCCCGAAGAGCACTACCTGTAGATTGGAAGTCCCTCCAGTT
TTCTTCGCCCCGCTTCTTGTCCAGCTGCGGACAGCGCGCCGTGAATACCCTTTTCTAAGT
TGAATTTTCAAAGTGAAAACAGCATCTCTAACAGTTGGATTTTGACTGCTTGGAACTGTG
CTCCTTTCAGCTAGACTTTTCCTTGCCTCAAATAAAAAGTGCTCTTATGAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGACCATACTGCCACCTCGGCTGCGTGGTCCTCCGGTCCGAGTCTGAGGAGCTCCGCA
GTCATGGCCAGCCACCTCGTGCTCTACACCGGTGCCAAGATGCCCATCTTGGGGCTGGGC
ACCTGGAAGTCCCCTCCAGGCAAAGTGACAGAGGCTGTGAAGGTGGCCATTGACCTTGGG
TACCGCCACATTGACTGTGCCCATGTGTACCAGAACGAGAACGAGGTGGGGCTGGGCCTC
CAGGAGAAGCTCCAAGGGCAGGTGGTGAAGCGTGAGGACCTCTTCATCGTCAGTAAGCTG
TGGTGCACAGACCATGAGAAGAACCTGGTGAAAGGGGCCTGCCAGACGACCCTCCGCAAC
CTGAAGCTGGACTACCTGGACCTCTACCTTATCCACTGGCCCACTGGCTTCAAGCCTGGC
AAGGACCCTTTCCCGCTGGATGGCGACGGCAACGTGGTTCCTGATGAGAGCGATTTTGTG
GAGACGTGGGAGGCCATGGAGGAGCTGGTGGACGAAGGGCTGGTGAAAGCCATTGGCGTC
TCCAACTTCAACCATCTGCAAGTGGAGAAGATCTTAAACAAACCTGGCCTGAAATACAAG
CCAGCCGTTAACCAGATCGAGGTCCACCCATACCTCACTCAGGAGAAGTTAATCGAATAC
TGCAAGTCCAAAGGCATCGTGGTGACTGCCTACAGCCCCCTCGGCTCTCCCGACAGGCCC
TGGGCCAAGCCTGAGGACCCTTCCCTCCTGGAGGACCCCAGGATCAAAGCGATTGCAGCC
AAGTACAATAAAACCACAGCCCAGGTTCTGATCCGGTTCCCCATGCAGAGGAACTTGATC
GTCATCCCCAAGTCCGTGACGCCTGAACGCATTGCCGAGAACTTCCAGGTCTTTGACTTT
GAACTGAGCCCTGAGGATATGAACACCTTACTGAGCTACAACAGGAACTGGAGGGTCTGT
GCCTTGATGAGCTGTGCCTCCCACAAGGATTATCCCTTTCACGAGGAATATTGAAGCTGG
GGGCGCCTGCCCTTCCCCAGGTGACCTGCTGTTTCCCTCCTCGCTTCCCCCCTGCCCAGT
GGAGCTCGGCCCCTGTCCCTCGGCAGCGGGTCAGCGACCCACCGAGGCGCCAGTGGGCGC
TTGGCCTGCATGGTGTGGGGCCCGAAGAGCACTACCTGTAGATTGGAAGTCCCTCCAGTT
TTCTTCGCCCCGCTTCTTGTCCAGCTGCGGACAGCGCGCCGTGAATACCCTTTTCTAAGT
TGAATTTTCAAAGTGAAAACAGCATCTCTAACAGTTGGATTTTGACTGCTTGGAACTGTG
CTCCTTTCAGCTAGACTTTTCCTTGCCTCAAATAAAAAGTGCTCTTATGAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|48374071|ref|NP_001001539.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|48374071|ref|NP_001001539.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               509-627, - strand, RNAz p=0.639903
               

               
               708-867, - strand, RNAz p=0.816562

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               509-627, - strand, RNAz p=0.639903
               

               
               708-867, - strand, RNAz p=0.816562

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               29-1416, gnl|bosTau2|chr2 (36412896-36411515)
               

               
               29-1416, gnl|Hg17|chr19 (38544204-38542860)
               

               
               29-1416, gnl|Mm7|chr12 (13517252-13515900)
               


               
               1097-1401, gnl|bosTau2|chr13 (38824953-38824644)
               

               
               1097-1401, gnl|Mm7|chr1 (55691284-55690994)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-1416, gnl|bosTau2|chr2 (36412896-36411515)
               

               
               29-1416, gnl|Hg17|chr19 (38544204-38542860)
               

               
               29-1416, gnl|Mm7|chr12 (13517252-13515900)
               


               
               1097-1401, gnl|bosTau2|chr13 (38824953-38824644)
               

               
               1097-1401, gnl|Mm7|chr1 (55691284-55690994)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

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               ute (2.78847)
               

               
               cov (0.528611)
               

               
               eye (0.511509)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               ill (0.351185)
               

               
               csp (0.322373)
               

               
               fce (0.271592)
               

               
               eep (0.245128)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (2.78847)
               

               
               cov (0.528611)
               

               
               eye (0.511509)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               ill (0.351185)
               

               
               csp (0.322373)
               

               
               fce (0.271592)
               

               
               eep (0.245128)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	509-627, - strand, RNAz p=0.639903
	708-867, - strand, RNAz p=0.816562

	29-1416, gnl\|bosTau2\|chr2 (36412896-36411515)
	29-1416, gnl\|Hg17\|chr19 (38544204-38542860)
	29-1416, gnl\|Mm7\|chr12 (13517252-13515900)

	1097-1401, gnl\|bosTau2\|chr13 (38824953-38824644)
	1097-1401, gnl\|Mm7\|chr1 (55691284-55690994)

	ute (2.78847)
	cov (0.528611)
	eye (0.511509)
	elu (0.385356)
	ese (0.379507)
	ill (0.351185)
	csp (0.322373)
	fce (0.271592)
	eep (0.245128)
	ecc (0.23007)
	ece (0.229305)
	nms (0.213858)
	mas (0.210305)
	hea (0.204499)
	nlu (0.191681)
	nep (0.183925)
	fty (0.17584)
	fhi (0.169578)
	hyp (0.142837)
	pty (0.142714)
	lnt (0.142308)
	hlv (0.139256)
	nmm (0.132802)
	cly (0.120642)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)