Ss1.1-Utr1-UTR010037C09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACCAACCACGTTCGAGAACCAACCCTCGTAACAGTTCTGCAAGGGAAAAACGTTCGACA GATCTCGGCCGGGCGCTGCCACAGTGCTGCATGGACAGCCCCTCCCGTCCCTCCAAGAGC GCCAGGTGTGTCAGTGCCTCTGCAGCTGGGCCTGCCTGATGCAGTGCCCCCCCAGTACGG GGCGCTGAGGGAGGTGAGCATTCACACTGCAAGGGCCAGGCTCCGGCTGCTTTACCACTT CTCTGACCTCATGTACTCGTCCTGGAGGCTACTGAACCTCAGCCCCAATAACCAGAATAG TACATCTCATTATAATGCTGGAACATGGGGCATTGTGCAGGGACAGCTTCGGCCTTTGTT AGCCCCAAGAGTCTACACCCTCCCAATGGTGCGCTCTATAGGAAAAACCATGGTTCAAGG CAAAAACTATGGACCTCAAATTACTGTAAAGAGGATATCAACCAGAGGACGGAAGTGTAA GCCCATCTTTGTTCAAATAGCGAGACAAGTAGTTAAACTGAATGCGTCAGATCTCCGTCT GCCCTCCCGCGCATGGAAGGTTAAGCTGGTTGGAGAAGGGGCTGATGATGCTGGAGGAGT GTTTGATGACACGATCACAGAGATGTGCCAGGAACTTGAAACTGGTATTGTTGACCTTCT TATACCCTCTCCAAATGCTACTGCAGAAGTGGGTTACAATAGGGACAGGTTCCTTTTTAA CCCTTCTGCCTGCCTCGATGAACACTTAATGCAGTTTAAATTCTTGGGAATTTTAATGGG GGTTGCCATTCGTACAAAGAAGCCTCTGGACCTCCACTTGGCCCCTCTGGTATGGAAGCA GCTGTGCTGCGTCCCACTCACCCTGGAAGACCTGGAGGAGGTGGATCTGCTCTATGTGCA GACTCTCAACAGCATTCTTCACATTGAAGACAGTGGGATTACTGAGGAGAGTTTCCATGA GATGATTCCTCTTGATTCTTTTGTTGGCCAGAGTGCTGATGGCAAAATGGTTCCTATAAT CCCTGGTGGAAATAGTATCCCACTCACATTTTCCAATAGGAAGGAATATGTGGAGAGGGC CATTGAATATCGACTTCATGAAATGGACCGACAGGTGGCTGCAGTCCGAGAAGGGATGTC CTGGATCGTCCCTGTGCCGCTGCTGTCCCTCCTCACTGCAAAGCAGCTGGAGCAGATGGT GTGCGGGATGCCTGAGATCTCCGTAGAAGTCTTAAAGAAAGTGGTGCGGTACCGGGAGGT GGACGAGCAGCATCAGCTGGTACAGTGGTTCTGGCACACACTGGAGGAGTTCTCCAATGA GGAGCGCGTGCTCTTCATGAGGTTTGTGTCTGGAAGATCTCGACTCCCAGCCAACACTGC TGACATTTCTCAGAGATTTCAGATCATGAAGGTTGATAGGCCTTATGACAGTCTGCCTAC CTCACAGACCTGCTTCTTCCAGCTGAGGCTGCCCCCTTATTCTAGCCAGCTGGTCATGGC CGAGCGCCTGCGCTATGCCATCAACAACTGCCGCTCCATTGACATGGACAACTACATGCT CTCCCGAAACGTGGACAACGCCGAGGGCTCCGACACTGACTACTGACCGCCAAGGGTGCC GTCACCCCTCTTTCTTGTCAGTAATGCTCACTTCCAGTTTAATGTTGATATACTTTTATG GTAACTATATAGATGTTTTAGGAACATAAACCAACATTATAAACAGTGGCCACACTTAGT TACTCTGAATGTAACAAAGAAATTAGATGTTTTTATTTTTCTGTGATTGTACAAAAAAAA AAAAAAAAAGACAAAGTGCTCTCAGTCAGGTTTTTCCCTCCATATTTTTGGTCACTTTTG ATAAGTTTGCATGGAACCATTTTGGTGCATTTTTAGTTGGGAATGGTACATTTTTGTAAA CCCACCCAGTGAACATGAAATTGTACATTGTGTATAATTGTTCATTAGAAAGGACAGTTT TACATGAATATTCATATATTTATTTTGTTTTAATTTGAATTGCCTGTGCAGGGTTCCTTA TGCAGAGAAATAAAGCCGATTCAGGAATCAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACCAACCACGTTCGAGAACCAACCCTCGTAACAGTTCTGCAAGGGAAAAACGTTCGACA GATCTCGGCCGGGCGCTGCCACAGTGCTGCATGGACAGCCCCTCCCGTCCCTCCAAGAGC GCCAGGTGTGTCAGTGCCTCTGCAGCTGGGCCTGCCTGATGCAGTGCCCCCCCAGTACGG GGCGCTGAGGGAGGTGAGCATTCACACTGCAAGGGCCAGGCTCCGGCTGCTTTACCACTT CTCTGACCTCATGTACTCGTCCTGGAGGCTACTGAACCTCAGCCCCAATAACCAGAATAG TACATCTCATTATAATGCTGGAACATGGGGCATTGTGCAGGGACAGCTTCGGCCTTTGTT AGCCCCAAGAGTCTACACCCTCCCAATGGTGCGCTCTATAGGAAAAACCATGGTTCAAGG CAAAAACTATGGACCTCAAATTACTGTAAAGAGGATATCAACCAGAGGACGGAAGTGTAA GCCCATCTTTGTTCAAATAGCGAGACAAGTAGTTAAACTGAATGCGTCAGATCTCCGTCT GCCCTCCCGCGCATGGAAGGTTAAGCTGGTTGGAGAAGGGGCTGATGATGCTGGAGGAGT GTTTGATGACACGATCACAGAGATGTGCCAGGAACTTGAAACTGGTATTGTTGACCTTCT TATACCCTCTCCAAATGCTACTGCAGAAGTGGGTTACAATAGGGACAGGTTCCTTTTTAA CCCTTCTGCCTGCCTCGATGAACACTTAATGCAGTTTAAATTCTTGGGAATTTTAATGGG GGTTGCCATTCGTACAAAGAAGCCTCTGGACCTCCACTTGGCCCCTCTGGTATGGAAGCA GCTGTGCTGCGTCCCACTCACCCTGGAAGACCTGGAGGAGGTGGATCTGCTCTATGTGCA GACTCTCAACAGCATTCTTCACATTGAAGACAGTGGGATTACTGAGGAGAGTTTCCATGA GATGATTCCTCTTGATTCTTTTGTTGGCCAGAGTGCTGATGGCAAAATGGTTCCTATAAT CCCTGGTGGAAATAGTATCCCACTCACATTTTCCAATAGGAAGGAATATGTGGAGAGGGC CATTGAATATCGACTTCATGAAATGGACCGACAGGTGGCTGCAGTCCGAGAAGGGATGTC CTGGATCGTCCCTGTGCCGCTGCTGTCCCTCCTCACTGCAAAGCAGCTGGAGCAGATGGT GTGCGGGATGCCTGAGATCTCCGTAGAAGTCTTAAAGAAAGTGGTGCGGTACCGGGAGGT GGACGAGCAGCATCAGCTGGTACAGTGGTTCTGGCACACACTGGAGGAGTTCTCCAATGA GGAGCGCGTGCTCTTCATGAGGTTTGTGTCTGGAAGATCTCGACTCCCAGCCAACACTGC TGACATTTCTCAGAGATTTCAGATCATGAAGGTTGATAGGCCTTATGACAGTCTGCCTAC CTCACAGACCTGCTTCTTCCAGCTGAGGCTGCCCCCTTATTCTAGCCAGCTGGTCATGGC CGAGCGCCTGCGCTATGCCATCAACAACTGCCGCTCCATTGACATGGACAACTACATGCT CTCCCGAAACGTGGACAACGCCGAGGGCTCCGACACTGACTACTGACCGCCAAGGGTGCC GTCACCCCTCTTTCTTGTCAGTAATGCTCACTTCCAGTTTAATGTTGATATACTTTTATG GTAACTATATAGATGTTTTAGGAACATAAACCAACATTATAAACAGTGGCCACACTTAGT TACTCTGAATGTAACAAAGAAATTAGATGTTTTTATTTTTCTGTGATTGTACAAAAAAAA AAAAAAAAAGACAAAGTGCTCTCAGTCAGGTTTTTCCCTCCATATTTTTGGTCACTTTTG ATAAGTTTGCATGGAACCATTTTGGTGCATTTTTAGTTGGGAATGGTACATTTTTGTAAA CCCACCCAGTGAACATGAAATTGTACATTGTGTATAATTGTTCATTAGAAAGGACAGTTT TACATGAATATTCATATATTTATTTTGTTTTAATTTGAATTGCCTGTGCAGGGTTCCTTA TGCAGAGAAATAAAGCCGATTCAGGAATCAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 745-2015, + strand, RNAz p=0.819078 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 745-2015, + strand, RNAz p=0.819078 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 2-128, gnl|bosTau2|chr10 (31578928-31578802) | |
| 2-128, gnl|canFam2|chr30 (31204773-31204954) | |
| 2-128, gnl|danRer3|chrUn (81412816-81412987) | |
| 2-128, gnl|dasNov1|scaffold_989 (82470-82653) | |
| 2-128, gnl|echTel1|scaffold_290668 (30684-30874) | |
| 2-128, gnl|fr1|chrUn (23779062-23778919) | |
| 2-128, gnl|galGal2|chr10 (4811227-4811059) | |
| 2-128, gnl|hg17|chr15 (61707920-61708104) | |
| 2-128, gnl|Hg17|chr15 (61708052-61707926) | |
| 2-128, gnl|loxAfr1|scaffold_1012 (114869-115057) | |
| 2-128, gnl|mm7|chr9 (66523630-66523450) | |
| 2-128, gnl|Mm7|chr9 (66523498-66523624) | |
| 2-128, gnl|monDom2|scaffold_12 (49968118-49967940) | |
| 2-128, gnl|oryCun1|scaffold_177047 (84041-84222) | |
| 2-128, gnl|panTro1|chr16 (62167471-62167655) | |
| 2-128, gnl|rheMac2|chr7 (42001964-42002148) | |
| 2-128, gnl|rn3|chr8 (70816744-70816562) | |
| 2-128, gnl|tetNig1|chrUn_random (6663659-6663507) | |
| 2-128, gnl|xenTro1|scaffold_62 (1269829-1270021) | |
| 293-465, gnl|bosTau2|chr10 (31575683-31575511) | |
| 293-465, gnl|canFam2|chr30 (31201115-31201373) | |
| 293-465, gnl|danRer3|chr19 (32295807-32295614) | |
| 293-465, gnl|dasNov1|scaffold_989 (78208-78466) | |
| 293-465, gnl|echTel1|scaffold_290668 (24376-24610) | |
| 293-465, gnl|fr1|chrUn (23779691-23779466) | |
| 293-465, gnl|galGal2|chr10 (4812115-4811876) | |
| 293-465, gnl|hg17|chr15 (61703409-61703669) | |
| 293-465, gnl|Hg17|chr15 (61703582-61703410) | |
| 293-465, gnl|loxAfr1|scaffold_1012 (111461-111720) | |
| 293-465, gnl|mm7|chr9 (66527668-66527427) | |
| 293-465, gnl|Mm7|chr9 (66527493-66527665) | |
| 293-465, gnl|monDom2|scaffold_12 (49970536-49970321) | |
| 293-465, gnl|oryCun1|scaffold_202462 (63318-63552) | |
| 293-465, gnl|panTro1|chr16 (62162944-62163204) | |
| 293-465, gnl|rheMac2|chr7 (41997503-41997763) | |
| 293-465, gnl|rn3|chr8 (70820816-70820583) | |
| 293-465, gnl|tetNig1|chrUn_random (6664336-6664160) | |
| 293-465, gnl|xenTro1|scaffold_62 (1268910-1269089) | |
| 706-970, gnl|bosTau2|chr10 (31573351-31573087) | |
| 706-970, gnl|Hg17|chr15 (61695937-61695673) | |
| 706-970, gnl|Mm7|chr9 (66531500-66531763) | |
| 1420-2070, gnl|bosTau2|chr10 (31566781-31566143) | |
| 1420-2070, gnl|Hg17|chr15 (61688519-61687872) | |
| 1420-2070, gnl|Mm7|chr9 (66538465-66539100) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-128, gnl|bosTau2|chr10 (31578928-31578802) | |
| 2-128, gnl|canFam2|chr30 (31204773-31204954) | |
| 2-128, gnl|danRer3|chrUn (81412816-81412987) | |
| 2-128, gnl|dasNov1|scaffold_989 (82470-82653) | |
| 2-128, gnl|echTel1|scaffold_290668 (30684-30874) | |
| 2-128, gnl|fr1|chrUn (23779062-23778919) | |
| 2-128, gnl|galGal2|chr10 (4811227-4811059) | |
| 2-128, gnl|hg17|chr15 (61707920-61708104) | |
| 2-128, gnl|Hg17|chr15 (61708052-61707926) | |
| 2-128, gnl|loxAfr1|scaffold_1012 (114869-115057) | |
| 2-128, gnl|mm7|chr9 (66523630-66523450) | |
| 2-128, gnl|Mm7|chr9 (66523498-66523624) | |
| 2-128, gnl|monDom2|scaffold_12 (49968118-49967940) | |
| 2-128, gnl|oryCun1|scaffold_177047 (84041-84222) | |
| 2-128, gnl|panTro1|chr16 (62167471-62167655) | |
| 2-128, gnl|rheMac2|chr7 (42001964-42002148) | |
| 2-128, gnl|rn3|chr8 (70816744-70816562) | |
| 2-128, gnl|tetNig1|chrUn_random (6663659-6663507) | |
| 2-128, gnl|xenTro1|scaffold_62 (1269829-1270021) | |
| 293-465, gnl|bosTau2|chr10 (31575683-31575511) | |
| 293-465, gnl|canFam2|chr30 (31201115-31201373) | |
| 293-465, gnl|danRer3|chr19 (32295807-32295614) | |
| 293-465, gnl|dasNov1|scaffold_989 (78208-78466) | |
| 293-465, gnl|echTel1|scaffold_290668 (24376-24610) | |
| 293-465, gnl|fr1|chrUn (23779691-23779466) | |
| 293-465, gnl|galGal2|chr10 (4812115-4811876) | |
| 293-465, gnl|hg17|chr15 (61703409-61703669) | |
| 293-465, gnl|Hg17|chr15 (61703582-61703410) | |
| 293-465, gnl|loxAfr1|scaffold_1012 (111461-111720) | |
| 293-465, gnl|mm7|chr9 (66527668-66527427) | |
| 293-465, gnl|Mm7|chr9 (66527493-66527665) | |
| 293-465, gnl|monDom2|scaffold_12 (49970536-49970321) | |
| 293-465, gnl|oryCun1|scaffold_202462 (63318-63552) | |
| 293-465, gnl|panTro1|chr16 (62162944-62163204) | |
| 293-465, gnl|rheMac2|chr7 (41997503-41997763) | |
| 293-465, gnl|rn3|chr8 (70820816-70820583) | |
| 293-465, gnl|tetNig1|chrUn_random (6664336-6664160) | |
| 293-465, gnl|xenTro1|scaffold_62 (1268910-1269089) | |
| 706-970, gnl|bosTau2|chr10 (31573351-31573087) | |
| 706-970, gnl|Hg17|chr15 (61695937-61695673) | |
| 706-970, gnl|Mm7|chr9 (66531500-66531763) | |
| 1420-2070, gnl|bosTau2|chr10 (31566781-31566143) | |
| 1420-2070, gnl|Hg17|chr15 (61688519-61687872) | |
| 1420-2070, gnl|Mm7|chr9 (66538465-66539100) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| cbe (0.717703) | |
| cut (0.679694) | |
| che (0.545256) | |
| sme (0.305437) | |
| cst (0.280073) | |
| fce (0.271592) | |
| med (0.232504) | |
| mgp (0.230681) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| fli (0.202881) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| fco (0.157208) | |
| fat (0.147427) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| csk (0.140746) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| sug (0.127291) | |
| ese (0.126502) | |
| tra (0.123092) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.717703) | |
| cut (0.679694) | |
| che (0.545256) | |
| sme (0.305437) | |
| cst (0.280073) | |
| fce (0.271592) | |
| med (0.232504) | |
| mgp (0.230681) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| fli (0.202881) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| fco (0.157208) | |
| fat (0.147427) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| csk (0.140746) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| sug (0.127291) | |
| ese (0.126502) | |
| tra (0.123092) | |
| cty (0.10408) | |
| nbm (0.0993246) |