Ss1.1-Utr1-UTR010037E11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGCGCACCTTTCTTTTTGAAGGCTCGAACCCATCTAGACTGCCATGCGCGAGCCTGAG GGCCTCGGTGCACCACGTCGGGCTCTGTCCTTGCTTCTAGCCACTCCTATTCCTCGGCTG ACCCCTGGTGGTCACGTGGAACTGCTCGCCACGCAAGTCTGGGTCCTGCAATCCGCTGGG GTCCTCGCTGCCTGAGAGCCGCTCCTACGCTGCCTGTTCGCGCGAGAGTTTGGAGGGGCG GGTTTGGGGTCGGTCTCTAGGGTGGGATTCTTACCGCAGCGCATCTGGGCCCTGATTAGG CAGGCGTCCACTTAGGGTCGGAAAAGCTGGCTCAGGCAGTCGCTGGGGCACCCCGTGTCT AGAAAGTGCAGGAGCGCTCTGGAGAAGCCTGGACAGCCCCGCGCTCCCGCAGCCAGGTGC TAGGTTTGAGAGCAAAAGTGAGAGTCCGGCTGTATTCCAGCGCCTGGGCCACCGCGGCGG CCCTGGGAGCAGAGGTGGAGCAACCCCATTGCGCTAAAGATGAAAGGCTGGGGTTGGCTG GCCCTGCTTCTAGGGGCCCTGCTGGGAACTGCCTGGGCTCGAAGGAGCCAAGATCTACAC TGTGGAGCTTGCAGGGCTCTGGTGGATGAACTAGAGTGGGAAATTGCTCAGGTGGATCCC AAGAAGACCATTCAGATGGGCTCTTTCCGAATCAATCCAGATGGCAGCCAGTCAGTGGTG GAGGTGCCTTATGCTCGCTCAGAGGCCCACCTCACAGAGCTGCTAGAGGAGGTATGTGAC CGGATGAAGGAGTATGGGGAACAGATTGATCCTTCCACCCACCGCAAGAACTACGTGCGT GTAGTGGGCCGGAATGGAGAGTCCAATGAACTGGACCTACAGGGCATCCGAATTGATTCA GACATCAGCGGCACCCTCAAGTTCGCGTGTGAGAGCATTGTGGAGGAATATGAGGATGAA CTCATTGAATTCTTTTCCCGTGAGGCTGACAACGTTAAAGACAAACTTTGTAGTAAGCGA ACAGATCTGTGTGACCATGCCCTGCACATATCGCATGATGAGCTATGAACCACTGGAGCG ACCCACATTGACAGGCTTGATGGATCACCCCCAGGAGGGGAAGAGGGTGGCAATGCCTTT TATATTATGTTTTTACTGAAATGAACTGAAAAAAAAAAAAAAAAGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGCGCACCTTTCTTTTTGAAGGCTCGAACCCATCTAGACTGCCATGCGCGAGCCTGAG GGCCTCGGTGCACCACGTCGGGCTCTGTCCTTGCTTCTAGCCACTCCTATTCCTCGGCTG ACCCCTGGTGGTCACGTGGAACTGCTCGCCACGCAAGTCTGGGTCCTGCAATCCGCTGGG GTCCTCGCTGCCTGAGAGCCGCTCCTACGCTGCCTGTTCGCGCGAGAGTTTGGAGGGGCG GGTTTGGGGTCGGTCTCTAGGGTGGGATTCTTACCGCAGCGCATCTGGGCCCTGATTAGG CAGGCGTCCACTTAGGGTCGGAAAAGCTGGCTCAGGCAGTCGCTGGGGCACCCCGTGTCT AGAAAGTGCAGGAGCGCTCTGGAGAAGCCTGGACAGCCCCGCGCTCCCGCAGCCAGGTGC TAGGTTTGAGAGCAAAAGTGAGAGTCCGGCTGTATTCCAGCGCCTGGGCCACCGCGGCGG CCCTGGGAGCAGAGGTGGAGCAACCCCATTGCGCTAAAGATGAAAGGCTGGGGTTGGCTG GCCCTGCTTCTAGGGGCCCTGCTGGGAACTGCCTGGGCTCGAAGGAGCCAAGATCTACAC TGTGGAGCTTGCAGGGCTCTGGTGGATGAACTAGAGTGGGAAATTGCTCAGGTGGATCCC AAGAAGACCATTCAGATGGGCTCTTTCCGAATCAATCCAGATGGCAGCCAGTCAGTGGTG GAGGTGCCTTATGCTCGCTCAGAGGCCCACCTCACAGAGCTGCTAGAGGAGGTATGTGAC CGGATGAAGGAGTATGGGGAACAGATTGATCCTTCCACCCACCGCAAGAACTACGTGCGT GTAGTGGGCCGGAATGGAGAGTCCAATGAACTGGACCTACAGGGCATCCGAATTGATTCA GACATCAGCGGCACCCTCAAGTTCGCGTGTGAGAGCATTGTGGAGGAATATGAGGATGAA CTCATTGAATTCTTTTCCCGTGAGGCTGACAACGTTAAAGACAAACTTTGTAGTAAGCGA ACAGATCTGTGTGACCATGCCCTGCACATATCGCATGATGAGCTATGAACCACTGGAGCG ACCCACATTGACAGGCTTGATGGATCACCCCCAGGAGGGGAAGAGGGTGGCAATGCCTTT TATATTATGTTTTTACTGAAATGAACTGAAAAAAAAAAAAAAAAGAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 8-498, gnl|bosTau2|chr5 (33325147-33325633) | |
| 8-498, gnl|canFam2|chr10 (3603098-3604029) | |
| 8-498, gnl|dasNov1|scaffold_5330 (39020-38022) | |
| 8-498, gnl|echTel1|scaffold_310154 (4812-3969) | |
| 8-498, gnl|hg17|chr12 (54995453-54996466) | |
| 8-498, gnl|Hg17|chr12 (54996361-54995868) | |
| 8-498, gnl|loxAfr1|scaffold_1805 (7888-6765) | |
| 8-498, gnl|mm7|chr10 (127824675-127823692) | |
| 8-498, gnl|Mm7|chr10 (127823803-127824276) | |
| 8-498, gnl|oryCun1|scaffold_186802 (29592-28688) | |
| 8-498, gnl|panTro1|chr10 (56246468-56247481) | |
| 8-498, gnl|rheMac2|chr11 (53390452-53391456) | |
| 8-498, gnl|rn3|chr7 (1611969-1610990) | |
| 722-933, gnl|bosTau2|chr5 (33327415-33327625) | |
| 722-933, gnl|canFam2|chr10 (3601480-3601649) | |
| 722-933, gnl|danRer3|chrNA (222493876-222494029) | |
| 722-933, gnl|dasNov1|scaffold_5330 (40730-40562) | |
| 722-933, gnl|echTel1|scaffold_310154 (6263-6105) | |
| 722-933, gnl|fr1|chrUn (176388791-176388638) | |
| 722-933, gnl|hg17|chr12 (54991248-54991417) | |
| 722-933, gnl|Hg17|chr12 (54991467-54991257) | |
| 722-933, gnl|loxAfr1|scaffold_1805 (9647-9477) | |
| 722-933, gnl|mm7|chr10 (127827785-127827611) | |
| 722-933, gnl|Mm7|chr10 (127827559-127827769) | |
| 722-933, gnl|oryCun1|scaffold_186802 (32212-32042) | |
| 722-933, gnl|panTro1|chr10 (56242278-56242447) | |
| 722-933, gnl|rheMac2|chr11 (53386613-53386782) | |
| 722-933, gnl|rn3|chr7 (1614996-1614822) | |
| 722-933, gnl|tetNig1|chr11 (2112225-2112385) | |
| 722-933, gnl|xenTro1|scaffold_85 (2489268-2489421) | |
| 1022-1181, gnl|bosTau2|chr5 (33328401-33328560) | |
| 1022-1181, gnl|canFam2|chr10 (3600699-3600835) | |
| 1022-1181, gnl|dasNov1|scaffold_5330 (41484-41351) | |
| 1022-1181, gnl|echTel1|scaffold_310154 (7030-6894) | |
| 1022-1181, gnl|hg17|chr12 (54990469-54990603) | |
| 1022-1181, gnl|Hg17|chr12 (54990649-54990492) | |
| 1022-1181, gnl|loxAfr1|scaffold_1805 (10412-10276) | |
| 1022-1181, gnl|mm7|chr10 (127828700-127828560) | |
| 1022-1181, gnl|Mm7|chr10 (127828512-127828675) | |
| 1022-1181, gnl|oryCun1|scaffold_186802 (32979-32846) | |
| 1022-1181, gnl|panTro1|chr10 (56241499-56241633) | |
| 1022-1181, gnl|rheMac2|chr11 (53385834-53385968) | |
| 1022-1181, gnl|rn3|chr7 (1615889-1615745) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-498, gnl|bosTau2|chr5 (33325147-33325633) | |
| 8-498, gnl|canFam2|chr10 (3603098-3604029) | |
| 8-498, gnl|dasNov1|scaffold_5330 (39020-38022) | |
| 8-498, gnl|echTel1|scaffold_310154 (4812-3969) | |
| 8-498, gnl|hg17|chr12 (54995453-54996466) | |
| 8-498, gnl|Hg17|chr12 (54996361-54995868) | |
| 8-498, gnl|loxAfr1|scaffold_1805 (7888-6765) | |
| 8-498, gnl|mm7|chr10 (127824675-127823692) | |
| 8-498, gnl|Mm7|chr10 (127823803-127824276) | |
| 8-498, gnl|oryCun1|scaffold_186802 (29592-28688) | |
| 8-498, gnl|panTro1|chr10 (56246468-56247481) | |
| 8-498, gnl|rheMac2|chr11 (53390452-53391456) | |
| 8-498, gnl|rn3|chr7 (1611969-1610990) | |
| 722-933, gnl|bosTau2|chr5 (33327415-33327625) | |
| 722-933, gnl|canFam2|chr10 (3601480-3601649) | |
| 722-933, gnl|danRer3|chrNA (222493876-222494029) | |
| 722-933, gnl|dasNov1|scaffold_5330 (40730-40562) | |
| 722-933, gnl|echTel1|scaffold_310154 (6263-6105) | |
| 722-933, gnl|fr1|chrUn (176388791-176388638) | |
| 722-933, gnl|hg17|chr12 (54991248-54991417) | |
| 722-933, gnl|Hg17|chr12 (54991467-54991257) | |
| 722-933, gnl|loxAfr1|scaffold_1805 (9647-9477) | |
| 722-933, gnl|mm7|chr10 (127827785-127827611) | |
| 722-933, gnl|Mm7|chr10 (127827559-127827769) | |
| 722-933, gnl|oryCun1|scaffold_186802 (32212-32042) | |
| 722-933, gnl|panTro1|chr10 (56242278-56242447) | |
| 722-933, gnl|rheMac2|chr11 (53386613-53386782) | |
| 722-933, gnl|rn3|chr7 (1614996-1614822) | |
| 722-933, gnl|tetNig1|chr11 (2112225-2112385) | |
| 722-933, gnl|xenTro1|scaffold_85 (2489268-2489421) | |
| 1022-1181, gnl|bosTau2|chr5 (33328401-33328560) | |
| 1022-1181, gnl|canFam2|chr10 (3600699-3600835) | |
| 1022-1181, gnl|dasNov1|scaffold_5330 (41484-41351) | |
| 1022-1181, gnl|echTel1|scaffold_310154 (7030-6894) | |
| 1022-1181, gnl|hg17|chr12 (54990469-54990603) | |
| 1022-1181, gnl|Hg17|chr12 (54990649-54990492) | |
| 1022-1181, gnl|loxAfr1|scaffold_1805 (10412-10276) | |
| 1022-1181, gnl|mm7|chr10 (127828700-127828560) | |
| 1022-1181, gnl|Mm7|chr10 (127828512-127828675) | |
| 1022-1181, gnl|oryCun1|scaffold_186802 (32979-32846) | |
| 1022-1181, gnl|panTro1|chr10 (56241499-56241633) | |
| 1022-1181, gnl|rheMac2|chr11 (53385834-53385968) | |
| 1022-1181, gnl|rn3|chr7 (1615889-1615745) |
| Expressed library(ies): 48 entry(ies) | More info |
| Expressed library(ies): 48 entry(ies) | Help | Less info |
| cje (1.48711) | |
| cst (1.40036) | |
| pro (1.02407) | |
| cut (1.01954) | |
| cki (0.991408) | |
| sto (0.719295) | |
| pgl (0.7109) | |
| sug (0.636456) | |
| sme (0.610874) | |
| cmu (0.55918) | |
| mga (0.480615) | |
| cbe (0.478469) | |
| mgp (0.461361) | |
| ski (0.440205) | |
| fli (0.405762) | |
| jej (0.395687) | |
| nlu (0.383362) | |
| bla (0.373042) | |
| gul (0.355177) | |
| sin (0.349895) | |
| isp (0.300752) | |
| cte (0.29274) | |
| fce (0.271592) | |
| cov (0.264306) | |
| thg (0.253582) | |
| eru (0.240096) | |
| pan (0.23596) | |
| spc (0.226732) | |
| nep (0.183925) | |
| ill (0.175593) | |
| duo (0.172801) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ret (0.128733) | |
| eep (0.122564) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 48 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (1.48711) | |
| cst (1.40036) | |
| pro (1.02407) | |
| cut (1.01954) | |
| cki (0.991408) | |
| sto (0.719295) | |
| pgl (0.7109) | |
| sug (0.636456) | |
| sme (0.610874) | |
| cmu (0.55918) | |
| mga (0.480615) | |
| cbe (0.478469) | |
| mgp (0.461361) | |
| ski (0.440205) | |
| fli (0.405762) | |
| jej (0.395687) | |
| nlu (0.383362) | |
| bla (0.373042) | |
| gul (0.355177) | |
| sin (0.349895) | |
| isp (0.300752) | |
| cte (0.29274) | |
| fce (0.271592) | |
| cov (0.264306) | |
| thg (0.253582) | |
| eru (0.240096) | |
| pan (0.23596) | |
| spc (0.226732) | |
| nep (0.183925) | |
| ill (0.175593) | |
| duo (0.172801) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ret (0.128733) | |
| eep (0.122564) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| nbm (0.0993246) |