Ss1.1-Utr1-UTR010037F11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGTAACCGGAGCTACAAAGAAGGGGAGAGTCCGGGAGAGGGAGGGAGGAGCGGCGGCG GCGCCGGGGGCCTCTCCGCACCCTCCCCCTGGGCAGGAGCCCCCTCGAAGCGGCCTCGGC CCCCGACGCGGGGCCGCCCCTCGGCGCCCGCGCCCGCCCGACCGCCCGGAATGATGAAGA AGAACAATTCCACCAAGAGGGGGCCTCAGGATGGAAACCATCAGTCTGCACCGCCTGAGA AGGTCGGCTGGGTCCGGAAATTCTGCGGGAAAGGGATTTTCAGGGAGATTTGGAAAAACC GCTATGTGGTGCTGAAAGGGGACCAGCTCTACATCTCTGAAAAGGAGGTAAAAGATGAGA AAAATATTCAAGAAGTGTTTGACCTGAGTGACTATGAGAAGTGTGAAGAGCTCCGGAAAT CCAAGAGCAGGAGCAAGAAGAACCATAGCAAGTTCACTCTTGCCCACTCCAAACAGCCCG GGAACACGGCACCCAACCTGATATTCCTGGCAGTCAGTCCAGAAGAGAAGGAATCATGGA TCAATGCCCTCAACTCTGCCATCACCCGAGCCAAGAACCGCATCCTGGATGAGGTCACCG TTGAAGAGGACAGCTATCTCGCCCACCCCACTCGAGACAGGGCAAAAATCCAGCACTCCC GCCGCCCCCCAACCCGGGGACACCTGATGGCCGTGGCTTCGACGTCTACCTCGGATGGAA TGCTAACCTTGGACCTGATCCAGGAGGAGGACCCTTCCCCTGAGGAATCAACCTCCTGTG CTGAGAGCTTTCGAGTCGACCTGGACAAGTCTGTGGCCCAGCTGGCAGGCAGCCGGCGGA GAGCAGACTCGGACCGCATCCAGCCCTCCGCGGACCGGGCAGGTGGCCTTCCCCGACGTT GGGAAAAGCCAGACAAAGGGGCCACTTATACCCCCCAGGCACCCAAGAAGTTGACTCCCA CAGAAAAAGGCCGCTGTGCCTCCCTGGAGGAGATCCTGTCTCAGCGGGACGCTGCCCCGG CCCGTGCCCTCCAACTGCGGGCCGAGGACCCCCCAACCCCCATCCCACCCCACCCGGGGC AGCTGTCCCGGATCCAGGACCTGGTAGCAAGGAAACTGGAGAAGACTCAGGAGCTGCTGG CAGAGGTTCAGGGACTGGGAGATGGGAAGCGAAAAGCCAAGGACCCCCCTCGGTCTCCTC CTGATTCGGAATCAGAGCAGCTGCTGCTGGAGACGGAGCGGCTGCTGGGAGAGGCATCAT CAAATTGGAGCCAGGCAAAGAGGGTGCTGCAGGAAGTCAGGGAGCTGAGGGACCTGTACA GACAGATGGACCTGCAGACCCCAGACTCCCACCTCAGACAGACTACCCAGCACAGTCAGT ACCGGAAGAGCCTGATGTGAAGAAAGGTGACAAGAGTCTGGAACTTGTGGGGCGGACAGA TTTTTATCTCCAAGGGTTGCAGGATAAAGCTTTTTTATTTACCTCAGTCAAAAAAAACAT AAACACAATCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGTAACCGGAGCTACAAAGAAGGGGAGAGTCCGGGAGAGGGAGGGAGGAGCGGCGGCG GCGCCGGGGGCCTCTCCGCACCCTCCCCCTGGGCAGGAGCCCCCTCGAAGCGGCCTCGGC CCCCGACGCGGGGCCGCCCCTCGGCGCCCGCGCCCGCCCGACCGCCCGGAATGATGAAGA AGAACAATTCCACCAAGAGGGGGCCTCAGGATGGAAACCATCAGTCTGCACCGCCTGAGA AGGTCGGCTGGGTCCGGAAATTCTGCGGGAAAGGGATTTTCAGGGAGATTTGGAAAAACC GCTATGTGGTGCTGAAAGGGGACCAGCTCTACATCTCTGAAAAGGAGGTAAAAGATGAGA AAAATATTCAAGAAGTGTTTGACCTGAGTGACTATGAGAAGTGTGAAGAGCTCCGGAAAT CCAAGAGCAGGAGCAAGAAGAACCATAGCAAGTTCACTCTTGCCCACTCCAAACAGCCCG GGAACACGGCACCCAACCTGATATTCCTGGCAGTCAGTCCAGAAGAGAAGGAATCATGGA TCAATGCCCTCAACTCTGCCATCACCCGAGCCAAGAACCGCATCCTGGATGAGGTCACCG TTGAAGAGGACAGCTATCTCGCCCACCCCACTCGAGACAGGGCAAAAATCCAGCACTCCC GCCGCCCCCCAACCCGGGGACACCTGATGGCCGTGGCTTCGACGTCTACCTCGGATGGAA TGCTAACCTTGGACCTGATCCAGGAGGAGGACCCTTCCCCTGAGGAATCAACCTCCTGTG CTGAGAGCTTTCGAGTCGACCTGGACAAGTCTGTGGCCCAGCTGGCAGGCAGCCGGCGGA GAGCAGACTCGGACCGCATCCAGCCCTCCGCGGACCGGGCAGGTGGCCTTCCCCGACGTT GGGAAAAGCCAGACAAAGGGGCCACTTATACCCCCCAGGCACCCAAGAAGTTGACTCCCA CAGAAAAAGGCCGCTGTGCCTCCCTGGAGGAGATCCTGTCTCAGCGGGACGCTGCCCCGG CCCGTGCCCTCCAACTGCGGGCCGAGGACCCCCCAACCCCCATCCCACCCCACCCGGGGC AGCTGTCCCGGATCCAGGACCTGGTAGCAAGGAAACTGGAGAAGACTCAGGAGCTGCTGG CAGAGGTTCAGGGACTGGGAGATGGGAAGCGAAAAGCCAAGGACCCCCCTCGGTCTCCTC CTGATTCGGAATCAGAGCAGCTGCTGCTGGAGACGGAGCGGCTGCTGGGAGAGGCATCAT CAAATTGGAGCCAGGCAAAGAGGGTGCTGCAGGAAGTCAGGGAGCTGAGGGACCTGTACA GACAGATGGACCTGCAGACCCCAGACTCCCACCTCAGACAGACTACCCAGCACAGTCAGT ACCGGAAGAGCCTGATGTGAAGAAAGGTGACAAGAGTCTGGAACTTGTGGGGCGGACAGA TTTTTATCTCCAAGGGTTGCAGGATAAAGCTTTTTTATTTACCTCAGTCAAAAAAAACAT AAACACAATCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 1-114, + strand, RNAz p=0.646162 | |
| 346-1452, - strand, RNAz p=0.949025 | |
| 854-973, - strand, RNAz p=0.62726 | |
| 1003-1120, - strand, RNAz p=0.755526 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-114, + strand, RNAz p=0.646162 | |
| 346-1452, - strand, RNAz p=0.949025 | |
| 854-973, - strand, RNAz p=0.62726 | |
| 1003-1120, - strand, RNAz p=0.755526 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-201, gnl|bosTau2|chr3 (17299178-17298984) | |
| 1-201, gnl|Hg17|chr1 (146935343-146935551) | |
| 346-489, gnl|bosTau2|chr3 (17294278-17294135) | |
| 346-489, gnl|canFam2|chr17 (62488002-62488181) | |
| 346-489, gnl|danRer3|chr21 (38426700-38426846) | |
| 346-489, gnl|echTel1|scaffold_312924 (5617-5438) | |
| 346-489, gnl|fr1|chrUn (39713742-39713907) | |
| 346-489, gnl|galGal2|chrUn (130390512-130390659) | |
| 346-489, gnl|hg17|chr1 (146941330-146941509) | |
| 346-489, gnl|Hg17|chr1 (146941331-146941474) | |
| 346-489, gnl|loxAfr1|scaffold_16577 (11335-11156) | |
| 346-489, gnl|mm7|chr3 (95866233-95866070) | |
| 346-489, gnl|Mm7|chr3 (95866230-95866087) | |
| 346-489, gnl|monDom2|scaffold_44 (3353824-3353998) | |
| 346-489, gnl|oryCun1|scaffold_177755 (37591-37406) | |
| 346-489, gnl|panTro1|chr1 (128659974-128660153) | |
| 346-489, gnl|rheMac2|chr1 (128518636-128518815) | |
| 346-489, gnl|rn3|chr2 (190754402-190754245) | |
| 346-489, gnl|tetNig1|chrUn_random (84803186-84803358) | |
| 346-489, gnl|xenTro1|scaffold_335 (441565-441411) | |
| 695-1120, gnl|bosTau2|chr3 (17291411-17290986) | |
| 695-1120, gnl|Hg17|chr1 (146944086-146944511) | |
| 695-1120, gnl|Mm7|chr3 (95863584-95863159) | |
| 1217-1510, gnl|bosTau2|chr3 (17291027-17290733) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-201, gnl|bosTau2|chr3 (17299178-17298984) | |
| 1-201, gnl|Hg17|chr1 (146935343-146935551) | |
| 346-489, gnl|bosTau2|chr3 (17294278-17294135) | |
| 346-489, gnl|canFam2|chr17 (62488002-62488181) | |
| 346-489, gnl|danRer3|chr21 (38426700-38426846) | |
| 346-489, gnl|echTel1|scaffold_312924 (5617-5438) | |
| 346-489, gnl|fr1|chrUn (39713742-39713907) | |
| 346-489, gnl|galGal2|chrUn (130390512-130390659) | |
| 346-489, gnl|hg17|chr1 (146941330-146941509) | |
| 346-489, gnl|Hg17|chr1 (146941331-146941474) | |
| 346-489, gnl|loxAfr1|scaffold_16577 (11335-11156) | |
| 346-489, gnl|mm7|chr3 (95866233-95866070) | |
| 346-489, gnl|Mm7|chr3 (95866230-95866087) | |
| 346-489, gnl|monDom2|scaffold_44 (3353824-3353998) | |
| 346-489, gnl|oryCun1|scaffold_177755 (37591-37406) | |
| 346-489, gnl|panTro1|chr1 (128659974-128660153) | |
| 346-489, gnl|rheMac2|chr1 (128518636-128518815) | |
| 346-489, gnl|rn3|chr2 (190754402-190754245) | |
| 346-489, gnl|tetNig1|chrUn_random (84803186-84803358) | |
| 346-489, gnl|xenTro1|scaffold_335 (441565-441411) | |
| 695-1120, gnl|bosTau2|chr3 (17291411-17290986) | |
| 695-1120, gnl|Hg17|chr1 (146944086-146944511) | |
| 695-1120, gnl|Mm7|chr3 (95863584-95863159) | |
| 1217-1510, gnl|bosTau2|chr3 (17291027-17290733) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| col (0.585023) | |
| fce (0.271592) | |
| jej (0.197844) | |
| eje (0.197668) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| nje (0.16592) | |
| cje (0.165235) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| eru (0.120048) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.585023) | |
| fce (0.271592) | |
| jej (0.197844) | |
| eje (0.197668) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| nje (0.16592) | |
| cje (0.165235) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| eru (0.120048) | |
| jca (0.11396) | |
| nbm (0.0993246) |