Ss1.1-Utr1-UTR010037G12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACACCTGGGGGACGCACGCAGTTGGCCGACAGCTTTCCCGGAACGCGCAAACGACGCCT CCTGGACTCCCGACCTCGCAAGGCTATCTGGGAGTTGTAGTTCAGTTTCGTGGCCAAACT CCGCCGTCCGGCCGCGGCTGGGAGGTCCAAGGCGGTCCATCGCCTTTGGATCTTGGTTCG GAGGATGGATCCGGGGCCCGGGACCGACGCGGCCCCGTTGGCTGGCCTGGCCTGGTCGTC GGCCTCGGCGCCTCCGCCAAGGGGATTCAGTGCGATCTCCTGCACCGTGGAGGGAGCTCC CGCCAGCTTCGGCAAGACCTTCGCGCAGAAATCCGGCTACTTCCTATGTCTCAATCCTTT GGGCAGCCTAGAGAATCCACAGGAGAACGTGGTGGTCGATATCCAGATCCTGGTGGACAA GAGCCCTCTCCCGCCGGGATTCTCCCCTGTCTGCGACCCCGTAGACTCCAAGGCCTCTGT ATCCAAGAAGAAACGCATGTGTGTTAAGCTGGTACCCTTGGGGGTCGCAGACACGGCTGT ATTTGACGTCCGGCTGAGTGGGAAAACCAAGACAGTGCCTGGATACCTTCGAGTCGGGGA CATGGGTGGCTTTGCCATCTGGTGCAAGAAAGCCAAAGCCCCGCGGCCAGTGCCCAAGCC CCGAGCTCTCAGCCGAGACATGAGGGACCTCTCCCTGGACCAGCCCAGCCAGCCCAGCAA GGGCGGCTTTCCAGAGCGGACACTCTCAAGGCTGGGCTCTCGGGCATCTACCCTACGGAG GAACGACTCCATCTACGAGGCTTCCAACCTTTATGGCATCTCAGCCATGGATGGGGTTCC CTTCACTCTGCACCCCCGATTTGAGGGCAAGAGCTGTGGCCCCCTGGCCTTCTCTGCCTT TGCTGATCTGACCATCAAGTCACTGGCGGACATTGAGGAGGAGTACAACTATGGCTTCGT GGTGGAGAAGACAGCGGCTGCCCGCCTTCCGCCTAGCGTCTCTTAGCCCCTCATCAGTCC CAGGAAAGAGTCCCGGGCCAATATCCCACCCGCACCCCGGGACTGGCAGATGCCGGCCTC ATTCTATCTTGGGAACCTTGGGCGGCGCAAGGCATTCTGGATCCTCGGCTACCCCGCGGT GCGGCAGCCTTGGAGGAGGGGGCGGGACGCGGCTGCTAGGTGATGGGCCCTGATGGGCAT GGGTGGGGGCTGGACGAAACCAGTGCCTTCAAGTCATTTGTGTCAAAACACTCTGGTGCC TGGAGGTCACGCGGGCGTCCTCCTGGTAATAAACACCACCCTGTCCAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACACCTGGGGGACGCACGCAGTTGGCCGACAGCTTTCCCGGAACGCGCAAACGACGCCT CCTGGACTCCCGACCTCGCAAGGCTATCTGGGAGTTGTAGTTCAGTTTCGTGGCCAAACT CCGCCGTCCGGCCGCGGCTGGGAGGTCCAAGGCGGTCCATCGCCTTTGGATCTTGGTTCG GAGGATGGATCCGGGGCCCGGGACCGACGCGGCCCCGTTGGCTGGCCTGGCCTGGTCGTC GGCCTCGGCGCCTCCGCCAAGGGGATTCAGTGCGATCTCCTGCACCGTGGAGGGAGCTCC CGCCAGCTTCGGCAAGACCTTCGCGCAGAAATCCGGCTACTTCCTATGTCTCAATCCTTT GGGCAGCCTAGAGAATCCACAGGAGAACGTGGTGGTCGATATCCAGATCCTGGTGGACAA GAGCCCTCTCCCGCCGGGATTCTCCCCTGTCTGCGACCCCGTAGACTCCAAGGCCTCTGT ATCCAAGAAGAAACGCATGTGTGTTAAGCTGGTACCCTTGGGGGTCGCAGACACGGCTGT ATTTGACGTCCGGCTGAGTGGGAAAACCAAGACAGTGCCTGGATACCTTCGAGTCGGGGA CATGGGTGGCTTTGCCATCTGGTGCAAGAAAGCCAAAGCCCCGCGGCCAGTGCCCAAGCC CCGAGCTCTCAGCCGAGACATGAGGGACCTCTCCCTGGACCAGCCCAGCCAGCCCAGCAA GGGCGGCTTTCCAGAGCGGACACTCTCAAGGCTGGGCTCTCGGGCATCTACCCTACGGAG GAACGACTCCATCTACGAGGCTTCCAACCTTTATGGCATCTCAGCCATGGATGGGGTTCC CTTCACTCTGCACCCCCGATTTGAGGGCAAGAGCTGTGGCCCCCTGGCCTTCTCTGCCTT TGCTGATCTGACCATCAAGTCACTGGCGGACATTGAGGAGGAGTACAACTATGGCTTCGT GGTGGAGAAGACAGCGGCTGCCCGCCTTCCGCCTAGCGTCTCTTAGCCCCTCATCAGTCC CAGGAAAGAGTCCCGGGCCAATATCCCACCCGCACCCCGGGACTGGCAGATGCCGGCCTC ATTCTATCTTGGGAACCTTGGGCGGCGCAAGGCATTCTGGATCCTCGGCTACCCCGCGGT GCGGCAGCCTTGGAGGAGGGGGCGGGACGCGGCTGCTAGGTGATGGGCCCTGATGGGCAT GGGTGGGGGCTGGACGAAACCAGTGCCTTCAAGTCATTTGTGTCAAAACACTCTGGTGCC TGGAGGTCACGCGGGCGTCCTCCTGGTAATAAACACCACCCTGTCCAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 981-1078, - strand, RNAz p=0.845819 | |
| 1191-1307, + strand, RNAz p=0.671331 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 981-1078, - strand, RNAz p=0.845819 | |
| 1191-1307, + strand, RNAz p=0.671331 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_138401, + |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 23-274, gnl|bosTau2|chr7 (4967065-4966815) | |
| 23-274, gnl|canFam2|chr20 (48374306-48373686) | |
| 23-274, gnl|echTel1|scaffold_213594 (4554-5177) | |
| 23-274, gnl|hg17|chr19 (17391702-17392328) | |
| 23-274, gnl|Hg17|chr19 (17391773-17392034) | |
| 23-274, gnl|loxAfr1|scaffold_118624 (8024-7387) | |
| 23-274, gnl|mm7|chr8 (70009952-70010529) | |
| 23-274, gnl|Mm7|chr8 (70010008-70010219) | |
| 23-274, gnl|panTro1|chr20 (18372131-18372751) | |
| 23-274, gnl|rn3|chr16 (18726807-18727361) | |
| 471-601, gnl|bosTau2|chr7 (4964994-4964864) | |
| 471-601, gnl|canFam2|chr20 (48372085-48371976) | |
| 471-601, gnl|echTel1|scaffold_213594 (7433-7542) | |
| 471-601, gnl|hg17|chr19 (17394139-17394248) | |
| 471-601, gnl|Hg17|chr19 (17394141-17394271) | |
| 471-601, gnl|loxAfr1|scaffold_118624 (4885-4806) | |
| 471-601, gnl|mm7|chr8 (70012384-70012493) | |
| 471-601, gnl|Mm7|chr8 (70012386-70012521) | |
| 471-601, gnl|panTro1|chr20 (18374880-18374989) | |
| 471-601, gnl|rn3|chr16 (18729172-18729281) | |
| 471-601, gnl|tetNig1|chrUn_random (69344041-69343932) | |
| 715-824, gnl|bosTau2|chr7 (4964321-4964212) | |
| 715-824, gnl|canFam2|chr20 (48371477-48371175) | |
| 715-824, gnl|echTel1|scaffold_213594 (8358-8703) | |
| 715-824, gnl|hg17|chr19 (17395230-17395569) | |
| 715-824, gnl|Hg17|chr19 (17395499-17395608) | |
| 715-824, gnl|loxAfr1|scaffold_118624 (4210-3870) | |
| 715-824, gnl|mm7|chr8 (70012681-70012979) | |
| 715-824, gnl|Mm7|chr8 (70012909-70013018) | |
| 715-824, gnl|panTro1|chr20 (18375965-18376304) | |
| 715-824, gnl|rn3|chr16 (18729469-18729786) | |
| 942-1307, gnl|bosTau2|chr7 (4963329-4962947) | |
| 942-1307, gnl|Hg17|chr19 (17396738-17397136) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 23-274, gnl|bosTau2|chr7 (4967065-4966815) | |
| 23-274, gnl|canFam2|chr20 (48374306-48373686) | |
| 23-274, gnl|echTel1|scaffold_213594 (4554-5177) | |
| 23-274, gnl|hg17|chr19 (17391702-17392328) | |
| 23-274, gnl|Hg17|chr19 (17391773-17392034) | |
| 23-274, gnl|loxAfr1|scaffold_118624 (8024-7387) | |
| 23-274, gnl|mm7|chr8 (70009952-70010529) | |
| 23-274, gnl|Mm7|chr8 (70010008-70010219) | |
| 23-274, gnl|panTro1|chr20 (18372131-18372751) | |
| 23-274, gnl|rn3|chr16 (18726807-18727361) | |
| 471-601, gnl|bosTau2|chr7 (4964994-4964864) | |
| 471-601, gnl|canFam2|chr20 (48372085-48371976) | |
| 471-601, gnl|echTel1|scaffold_213594 (7433-7542) | |
| 471-601, gnl|hg17|chr19 (17394139-17394248) | |
| 471-601, gnl|Hg17|chr19 (17394141-17394271) | |
| 471-601, gnl|loxAfr1|scaffold_118624 (4885-4806) | |
| 471-601, gnl|mm7|chr8 (70012384-70012493) | |
| 471-601, gnl|Mm7|chr8 (70012386-70012521) | |
| 471-601, gnl|panTro1|chr20 (18374880-18374989) | |
| 471-601, gnl|rn3|chr16 (18729172-18729281) | |
| 471-601, gnl|tetNig1|chrUn_random (69344041-69343932) | |
| 715-824, gnl|bosTau2|chr7 (4964321-4964212) | |
| 715-824, gnl|canFam2|chr20 (48371477-48371175) | |
| 715-824, gnl|echTel1|scaffold_213594 (8358-8703) | |
| 715-824, gnl|hg17|chr19 (17395230-17395569) | |
| 715-824, gnl|Hg17|chr19 (17395499-17395608) | |
| 715-824, gnl|loxAfr1|scaffold_118624 (4210-3870) | |
| 715-824, gnl|mm7|chr8 (70012681-70012979) | |
| 715-824, gnl|Mm7|chr8 (70012909-70013018) | |
| 715-824, gnl|panTro1|chr20 (18375965-18376304) | |
| 715-824, gnl|rn3|chr16 (18729469-18729786) | |
| 942-1307, gnl|bosTau2|chr7 (4963329-4962947) | |
| 942-1307, gnl|Hg17|chr19 (17396738-17397136) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| amn (0.417711) | |
| ecc (0.345105) | |
| fhi (0.339155) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| nca (0.273748) | |
| ebs (0.236602) | |
| jej (0.197844) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| cki (0.165235) | |
| nco (0.161734) | |
| cli (0.152812) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| eep (0.122564) | |
| cty (0.10408) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| ecc (0.345105) | |
| fhi (0.339155) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| nca (0.273748) | |
| ebs (0.236602) | |
| jej (0.197844) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| cki (0.165235) | |
| nco (0.161734) | |
| cli (0.152812) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| eep (0.122564) | |
| cty (0.10408) |