Non-Coding RNA Search

Ss1.1-Utr1-UTR010037H11.5

Sequence:


               
               AGTCGCTGCACGGAGCTGTGGAGCTCGACTGCGTTTCCCGGACCAGACCCGCTCTCCCGG
AGACCCGTGCCCCCTGCCCGGCCATGGAGCCTGCCCCCGACGCCGAGGAGGCGCGCACCG
TGCGCGAGGCGCTGGGCCGCTACGAGGCGGCGCTGGAGGGCGCGGTGCGCGCGCTACACG
AGGACATGCAGGGGCTGCAGCGCGGCGTGGAGCAGCGCGTGGCCGAGGCGCTGCGCCTGG
CCGGGCCGCTGGCGCGTACGGTGGCCGAACTGCAGCGCGACAACCAGCGGCTACAGGCGC
AGCTCGAGCGCTTGACGCGCCAGGTGGAAGCTTTGGGCTTGGCGACCGGGATGGCCCCCA
CGCCCGGCACGCCCAGCCCTCCGCCCGCGCCCAGTGTCCCGGACCGCGCGCCCCGCCTGG
GCACTGCGCGCTTCGCCAGCCACGCCACCTTCTCGCTGTCCGGCCGCAGCCAGAGCGTGG
ATCAACATGACGAGGCCAGTGGGTCTGAGACCAGAAGGACCTCAAACTCGTGCATCTTCG
AGAATGGGCACCAGCCTGGGGCAGGTCTTGGTGATGGACCCCCAGAGGCTCCCCAAACCA
TCCCAGCACCAGAGCCCCCCAAGCCTCGCCCCGTGAGCCTGTCCTTGCGCCTGCCTCACC
AGCCAGTCACGGCCGTCACGCGCGTCTCCGAGAGGTTCTCTGGGGAGACCTCGGCCACAG
CTCTCTCGGCCACGTCTGCTGCCAAACTGGGGAGCCCCAGCGAGGCCACCACACCCTGGA
CTCCCAGTCCCAGTGAGAAGAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCGCTGCACGGAGCTGTGGAGCTCGACTGCGTTTCCCGGACCAGACCCGCTCTCCCGG
AGACCCGTGCCCCCTGCCCGGCCATGGAGCCTGCCCCCGACGCCGAGGAGGCGCGCACCG
TGCGCGAGGCGCTGGGCCGCTACGAGGCGGCGCTGGAGGGCGCGGTGCGCGCGCTACACG
AGGACATGCAGGGGCTGCAGCGCGGCGTGGAGCAGCGCGTGGCCGAGGCGCTGCGCCTGG
CCGGGCCGCTGGCGCGTACGGTGGCCGAACTGCAGCGCGACAACCAGCGGCTACAGGCGC
AGCTCGAGCGCTTGACGCGCCAGGTGGAAGCTTTGGGCTTGGCGACCGGGATGGCCCCCA
CGCCCGGCACGCCCAGCCCTCCGCCCGCGCCCAGTGTCCCGGACCGCGCGCCCCGCCTGG
GCACTGCGCGCTTCGCCAGCCACGCCACCTTCTCGCTGTCCGGCCGCAGCCAGAGCGTGG
ATCAACATGACGAGGCCAGTGGGTCTGAGACCAGAAGGACCTCAAACTCGTGCATCTTCG
AGAATGGGCACCAGCCTGGGGCAGGTCTTGGTGATGGACCCCCAGAGGCTCCCCAAACCA
TCCCAGCACCAGAGCCCCCCAAGCCTCGCCCCGTGAGCCTGTCCTTGCGCCTGCCTCACC
AGCCAGTCACGGCCGTCACGCGCGTCTCCGAGAGGTTCTCTGGGGAGACCTCGGCCACAG
CTCTCTCGGCCACGTCTGCTGCCAAACTGGGGAGCCCCAGCGAGGCCACCACACCCTGGA
CTCCCAGTCCCAGTGAGAAGAATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26351899|dbj|BAC39586.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26351899|dbj|BAC39586.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-473, gnl|bosTau2|chr19 (19699807-19699335)
               

               
               1-473, gnl|Hg17|chr17 (4434573-4435048)
               

               
               1-473, gnl|Mm7|chr11 (72493285-72492818)
               


               
               562-795, gnl|bosTau2|chr19 (19690746-19690501)
               

               
               562-795, gnl|canFam2|chr5 (33567669-33568051)
               

               
               562-795, gnl|dasNov1|scaffold_30622 (3085-3456)
               

               
               562-795, gnl|hg17|chr17 (4442902-4443289)
               

               
               562-795, gnl|Hg17|chr17 (4442970-4443215)
               

               
               562-795, gnl|loxAfr1|scaffold_65783 (5161-5535)
               

               
               562-795, gnl|mm7|chr11 (72484906-72484513)
               

               
               562-795, gnl|Mm7|chr11 (72484827-72484585)
               

               
               562-795, gnl|oryCun1|scaffold_187018 (13813-13456)
               

               
               562-795, gnl|panTro1|chr19 (4751544-4751931)
               

               
               562-795, gnl|rheMac2|chr16 (4372081-4372468)
               

               
               562-795, gnl|rn3|chr10 (59303169-59302780)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-473, gnl|bosTau2|chr19 (19699807-19699335)
               

               
               1-473, gnl|Hg17|chr17 (4434573-4435048)
               

               
               1-473, gnl|Mm7|chr11 (72493285-72492818)
               


               
               562-795, gnl|bosTau2|chr19 (19690746-19690501)
               

               
               562-795, gnl|canFam2|chr5 (33567669-33568051)
               

               
               562-795, gnl|dasNov1|scaffold_30622 (3085-3456)
               

               
               562-795, gnl|hg17|chr17 (4442902-4443289)
               

               
               562-795, gnl|Hg17|chr17 (4442970-4443215)
               

               
               562-795, gnl|loxAfr1|scaffold_65783 (5161-5535)
               

               
               562-795, gnl|mm7|chr11 (72484906-72484513)
               

               
               562-795, gnl|Mm7|chr11 (72484827-72484585)
               

               
               562-795, gnl|oryCun1|scaffold_187018 (13813-13456)
               

               
               562-795, gnl|panTro1|chr19 (4751544-4751931)
               

               
               562-795, gnl|rheMac2|chr16 (4372081-4372468)
               

               
               562-795, gnl|rn3|chr10 (59303169-59302780)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mas (0.210305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)

	1-473, gnl\|bosTau2\|chr19 (19699807-19699335)
	1-473, gnl\|Hg17\|chr17 (4434573-4435048)
	1-473, gnl\|Mm7\|chr11 (72493285-72492818)

	562-795, gnl\|bosTau2\|chr19 (19690746-19690501)
	562-795, gnl\|canFam2\|chr5 (33567669-33568051)
	562-795, gnl\|dasNov1\|scaffold_30622 (3085-3456)
	562-795, gnl\|hg17\|chr17 (4442902-4443289)
	562-795, gnl\|Hg17\|chr17 (4442970-4443215)
	562-795, gnl\|loxAfr1\|scaffold_65783 (5161-5535)
	562-795, gnl\|mm7\|chr11 (72484906-72484513)
	562-795, gnl\|Mm7\|chr11 (72484827-72484585)
	562-795, gnl\|oryCun1\|scaffold_187018 (13813-13456)
	562-795, gnl\|panTro1\|chr19 (4751544-4751931)
	562-795, gnl\|rheMac2\|chr16 (4372081-4372468)
	562-795, gnl\|rn3\|chr10 (59303169-59302780)