Ss1.1-Utr1-UTR010038A11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACATGTGGACGCTCGGGCGCCGAGCGGCTGCCGGCCTCCTTCCCCGCTCCGGGCCCCGAG GCTCTGCCCAGGCCCGCGCCGGGGCTCCGCGGCCGACGAAAGATCCCCAGCCTTATGGCT GCCGGGGTCTGCGCACCGGGACCGCCGCGGCACGCGCACGCAACCAGTCGAGTGTGAGCC TCCGCTGCCTCAACCAGATTCTGAATGTCAAAAAGCAGAGCATCTGTTTGATGAATTTGA GGACAACAGGAACTTTGGGCAATGCTGGCTCTCTGGATGATACCACCTATGAAAGGCTGG CCGAGGAGACGCTGGACTCCTTAGCAGAGTTTTTTGAAGACCTTGCAGACAAACCTTTCA CATTTGAAGACTATGATGTCTCCTTTGGGAGTGGCGTTTTAACCATTAAACTGGGTGGAG ATCTAGGAACCTACGTGATCAACAAGCAGACCCCAAACAAGCAAATCTGGTTATCTTCAC CATCCAGTGGCCCCAAGCGCTACGACTGGACGGGGAGGAACTGGGTGTACTCCCACGACG GTGTGTCCCTCCACGAGCTGCTGGCCAGGGAGCTGACGACGGCCTTAAAAACCAAACTGG ACTTATCTTCTCTGGCCTACTCTGGGAAAGGCACTTGCTGCCCAGCCTAGTGCTAAAGAC ATTAAAAGCTCTACAGCCAAGACCCCAGCTTTGGCCTTCAGCCGAATGGCTAGTTTTTTC CATTCTTGCCTTTGAGGACAGTTATATTGTGTGTAGCTGCTCTGTGAAAAGACTGTGTCG CCTCTCGCCCTGCCCCTGATTAATTTCCATAGAGTTTTTTTTTTTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACATGTGGACGCTCGGGCGCCGAGCGGCTGCCGGCCTCCTTCCCCGCTCCGGGCCCCGAG GCTCTGCCCAGGCCCGCGCCGGGGCTCCGCGGCCGACGAAAGATCCCCAGCCTTATGGCT GCCGGGGTCTGCGCACCGGGACCGCCGCGGCACGCGCACGCAACCAGTCGAGTGTGAGCC TCCGCTGCCTCAACCAGATTCTGAATGTCAAAAAGCAGAGCATCTGTTTGATGAATTTGA GGACAACAGGAACTTTGGGCAATGCTGGCTCTCTGGATGATACCACCTATGAAAGGCTGG CCGAGGAGACGCTGGACTCCTTAGCAGAGTTTTTTGAAGACCTTGCAGACAAACCTTTCA CATTTGAAGACTATGATGTCTCCTTTGGGAGTGGCGTTTTAACCATTAAACTGGGTGGAG ATCTAGGAACCTACGTGATCAACAAGCAGACCCCAAACAAGCAAATCTGGTTATCTTCAC CATCCAGTGGCCCCAAGCGCTACGACTGGACGGGGAGGAACTGGGTGTACTCCCACGACG GTGTGTCCCTCCACGAGCTGCTGGCCAGGGAGCTGACGACGGCCTTAAAAACCAAACTGG ACTTATCTTCTCTGGCCTACTCTGGGAAAGGCACTTGCTGCCCAGCCTAGTGCTAAAGAC ATTAAAAGCTCTACAGCCAAGACCCCAGCTTTGGCCTTCAGCCGAATGGCTAGTTTTTTC CATTCTTGCCTTTGAGGACAGTTATATTGTGTGTAGCTGCTCTGTGAAAAGACTGTGTCG CCTCTCGCCCTGCCCCTGATTAATTTCCATAGAGTTTTTTTTTTTTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 2-169, gnl|bosTau2|chr8 (19850090-19849923) | |
| 2-169, gnl|Hg17|chr9 (68880252-68880416) | |
| 2-169, gnl|Mm7|chr19 (23979490-23979332) | |
| 268-389, gnl|bosTau2|chr8 (19840639-19840518) | |
| 268-389, gnl|canFam2|chr1 (91368023-91368116) | |
| 268-389, gnl|canFam2|chr11 (22136756-22136855) | |
| 268-389, gnl|dasNov1|scaffold_89648 (3685-3599) | |
| 268-389, gnl|dasNov1|scaffold_89648 (3565-3646) | |
| 268-389, gnl|echTel1|scaffold_197204 (1331-1238) | |
| 268-389, gnl|echTel1|scaffold_197204 (1210-1292) | |
| 268-389, gnl|hg17|chr14 (77596282-77596376) | |
| 268-389, gnl|hg17|chr5 (129961999-129962090) | |
| 268-389, gnl|Hg17|chr9 (68897609-68897730) | |
| 268-389, gnl|loxAfr1|scaffold_11312 (15730-15638) | |
| 268-389, gnl|loxAfr1|scaffold_11312 (15632-15692) | |
| 268-389, gnl|mm7|chr17 (36185719-36185800) | |
| 268-389, gnl|Mm7|chr19 (23971392-23971271) | |
| 268-389, gnl|mm7|chr7 (91945458-91945551) | |
| 268-389, gnl|oryCun1|scaffold_164660 (294-387) | |
| 268-389, gnl|oryCun1|scaffold_188510 (191410-191310) | |
| 268-389, gnl|panTro1|chr15 (77659910-77660004) | |
| 268-389, gnl|panTro1|chr4 (136327645-136327737) | |
| 268-389, gnl|rheMac2|chr6 (127046701-127046789) | |
| 268-389, gnl|rheMac2|chr7 (141235563-141235657) | |
| 268-389, gnl|rn3|chr6 (16835711-16835610) | |
| 268-389, gnl|rn3|chr6 (16835590-16835672) | |
| 268-389, gnl|tetNig1|chrUn_random (20298597-20298508) | |
| 486-796, gnl|bosTau2|chr8 (19828999-19828689) | |
| 486-796, gnl|Hg17|chr9 (68917080-68917411) | |
| 486-796, gnl|Mm7|chr19 (23960972-23960664) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-169, gnl|bosTau2|chr8 (19850090-19849923) | |
| 2-169, gnl|Hg17|chr9 (68880252-68880416) | |
| 2-169, gnl|Mm7|chr19 (23979490-23979332) | |
| 268-389, gnl|bosTau2|chr8 (19840639-19840518) | |
| 268-389, gnl|canFam2|chr1 (91368023-91368116) | |
| 268-389, gnl|canFam2|chr11 (22136756-22136855) | |
| 268-389, gnl|dasNov1|scaffold_89648 (3685-3599) | |
| 268-389, gnl|dasNov1|scaffold_89648 (3565-3646) | |
| 268-389, gnl|echTel1|scaffold_197204 (1331-1238) | |
| 268-389, gnl|echTel1|scaffold_197204 (1210-1292) | |
| 268-389, gnl|hg17|chr14 (77596282-77596376) | |
| 268-389, gnl|hg17|chr5 (129961999-129962090) | |
| 268-389, gnl|Hg17|chr9 (68897609-68897730) | |
| 268-389, gnl|loxAfr1|scaffold_11312 (15730-15638) | |
| 268-389, gnl|loxAfr1|scaffold_11312 (15632-15692) | |
| 268-389, gnl|mm7|chr17 (36185719-36185800) | |
| 268-389, gnl|Mm7|chr19 (23971392-23971271) | |
| 268-389, gnl|mm7|chr7 (91945458-91945551) | |
| 268-389, gnl|oryCun1|scaffold_164660 (294-387) | |
| 268-389, gnl|oryCun1|scaffold_188510 (191410-191310) | |
| 268-389, gnl|panTro1|chr15 (77659910-77660004) | |
| 268-389, gnl|panTro1|chr4 (136327645-136327737) | |
| 268-389, gnl|rheMac2|chr6 (127046701-127046789) | |
| 268-389, gnl|rheMac2|chr7 (141235563-141235657) | |
| 268-389, gnl|rn3|chr6 (16835711-16835610) | |
| 268-389, gnl|rn3|chr6 (16835590-16835672) | |
| 268-389, gnl|tetNig1|chrUn_random (20298597-20298508) | |
| 486-796, gnl|bosTau2|chr8 (19828999-19828689) | |
| 486-796, gnl|Hg17|chr9 (68917080-68917411) | |
| 486-796, gnl|Mm7|chr19 (23960972-23960664) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| fty (0.17584) | |
| cag (0.151194) | |
| spl (0.143184) | |
| nmm (0.132802) | |
| cov (0.132153) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.17584) | |
| cag (0.151194) | |
| spl (0.143184) | |
| nmm (0.132802) | |
| cov (0.132153) |