Ss1.1-Utr1-UTR010038B01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGGCTCTAGCTCCGGCTGCAGCTCCGGCTCGCGATGCCCCACTCCGTGACCCTGCGCGG CCCTTCGCCCTGGGGCTTCCGCCTGGTGGGCGGCCGGGACTTCAGCGTACCCCTCACCAT CTCGCGGGTCCATGCTGGCAGCAAGGCTGCCCAGGCTGCCCTGTGCCCTGGAGACCTGAT CCAGGCCATCAATGGTGAGAGCACAGAGCTCATGACACACCTGGAGGCGCAGAACCGCAT CAAGGGCTGCCATGACCACCTCACCCTCTCCGTGAGCAGGCCTGAAAGCAGGAGCTGGCC CAGTACCCCAGAGGAGAACAAGGCTCAGGCACACAGGATCCACATTGACCCCGAGGCCCA GGATGGCAGTCCAGCGACCAGCAGGAGGCCTTCAGCTGCTGGGACTGGGCCAGAAGATGG CAGGTCAGGCCTGGGATCTCCTTACGGACAGTCGCCTCGCCTCCCAGCCCCACACAATGG CAGCAGCAGTGAGGCTCCTATGCTGGCCCAGATGAGCACCCTGCATGTGTCTCCACCCCA CAGCATTGACCCAGCCAGAGGCCTTCAGCGGAGCCGCGACTGTGGAGTCGACCTGGGCTC AGAGGTGTACAGGATGCTCCAGGAGCCGGCTGAGCCCATGGCTGCGGAGCCCAAGCAGTC AGGCTCCTTCCGCTACTTGCAGGGCATGTTAGAGGCAGGCGAGAGCGGGGAACGGCCGGG GCCTGCCGGCCCCCGGAACCTCAAGCCCCCCGCCAGCAAGCTGGGCGCTCCGCTGAGCGG CCTGCAGGGGCTGCCCGAGTGCACGCGCTGCGGCCACGGCATCGTGGGGACCATTGTCAA GGCGCGAGACAAGCTCTACCACCCCGAGTGCTTCATGTGCAGCGACTGCGGCCTGAACCT CAAGCAGCGCGGTTACTTCTTTCTGGACGAGCGGCTCTACTGCGAGAGCCACGCCAAGGC GCGCGTGAAGCCACCCGAGGGCTACGACGTGGTGGCAGTGTACCCCAATGCCAAAGTGGA ACTCGTCTGAGCCGCTGTCGAAACCGCCAGTCCCCAACTCTGCTTCTTTTAATGTCCCCA CGAGGCCAGTGTAAATATGTGTGTGCCCTGCCTTCCTAATAAATTCCCGATGCCCATCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGGCTCTAGCTCCGGCTGCAGCTCCGGCTCGCGATGCCCCACTCCGTGACCCTGCGCGG CCCTTCGCCCTGGGGCTTCCGCCTGGTGGGCGGCCGGGACTTCAGCGTACCCCTCACCAT CTCGCGGGTCCATGCTGGCAGCAAGGCTGCCCAGGCTGCCCTGTGCCCTGGAGACCTGAT CCAGGCCATCAATGGTGAGAGCACAGAGCTCATGACACACCTGGAGGCGCAGAACCGCAT CAAGGGCTGCCATGACCACCTCACCCTCTCCGTGAGCAGGCCTGAAAGCAGGAGCTGGCC CAGTACCCCAGAGGAGAACAAGGCTCAGGCACACAGGATCCACATTGACCCCGAGGCCCA GGATGGCAGTCCAGCGACCAGCAGGAGGCCTTCAGCTGCTGGGACTGGGCCAGAAGATGG CAGGTCAGGCCTGGGATCTCCTTACGGACAGTCGCCTCGCCTCCCAGCCCCACACAATGG CAGCAGCAGTGAGGCTCCTATGCTGGCCCAGATGAGCACCCTGCATGTGTCTCCACCCCA CAGCATTGACCCAGCCAGAGGCCTTCAGCGGAGCCGCGACTGTGGAGTCGACCTGGGCTC AGAGGTGTACAGGATGCTCCAGGAGCCGGCTGAGCCCATGGCTGCGGAGCCCAAGCAGTC AGGCTCCTTCCGCTACTTGCAGGGCATGTTAGAGGCAGGCGAGAGCGGGGAACGGCCGGG GCCTGCCGGCCCCCGGAACCTCAAGCCCCCCGCCAGCAAGCTGGGCGCTCCGCTGAGCGG CCTGCAGGGGCTGCCCGAGTGCACGCGCTGCGGCCACGGCATCGTGGGGACCATTGTCAA GGCGCGAGACAAGCTCTACCACCCCGAGTGCTTCATGTGCAGCGACTGCGGCCTGAACCT CAAGCAGCGCGGTTACTTCTTTCTGGACGAGCGGCTCTACTGCGAGAGCCACGCCAAGGC GCGCGTGAAGCCACCCGAGGGCTACGACGTGGTGGCAGTGTACCCCAATGCCAAAGTGGA ACTCGTCTGAGCCGCTGTCGAAACCGCCAGTCCCCAACTCTGCTTCTTTTAATGTCCCCA CGAGGCCAGTGTAAATATGTGTGTGCCCTGCCTTCCTAATAAATTCCCGATGCCCATCCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 117-235, - strand, RNAz p=0.707432 | |
| 117-224, - strand, RNAz p=0.538548 | |
| 677-795, - strand, RNAz p=0.749771 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 117-235, - strand, RNAz p=0.707432 | |
| 117-224, - strand, RNAz p=0.538548 | |
| 677-795, - strand, RNAz p=0.749771 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 117-280, gnl|bosTau2|chr7 (20858990-20859152) | |
| 117-280, gnl|canFam2|chr11 (23580914-23581093) | |
| 117-280, gnl|danRer3|chr13 (25825758-25825926) | |
| 117-280, gnl|dasNov1|scaffold_14050 (6494-6315) | |
| 117-280, gnl|echTel1|scaffold_323844 (27582-27758) | |
| 117-280, gnl|fr1|chrUn (144499485-144499652) | |
| 117-280, gnl|hg17|chr5 (131626181-131626360) | |
| 117-280, gnl|Hg17|chr5 (131626191-131626353) | |
| 117-280, gnl|loxAfr1|scaffold_147384 (4-155) | |
| 117-280, gnl|mm7|chr11 (54020565-54020386) | |
| 117-280, gnl|Mm7|chr11 (54020553-54020391) | |
| 117-280, gnl|oryCun1|scaffold_181949 (78719-78898) | |
| 117-280, gnl|panTro1|chr4 (137959224-137959403) | |
| 117-280, gnl|rheMac2|chr6 (128676656-128676835) | |
| 117-280, gnl|rn3|chr1 (245474120-245473956) | |
| 117-280, gnl|tetNig1|chr7 (8441818-8441673) | |
| 357-543, gnl|bosTau2|chr7 (20867316-20867502) | |
| 357-543, gnl|Hg17|chr5 (131634502-131634685) | |
| 357-543, gnl|Mm7|chr11 (54013086-54012900) | |
| 677-1010, gnl|bosTau2|chr18 (15851359-15851693) | |
| 677-1010, gnl|Hg17|chr14 (49587469-49587803) | |
| 677-1010, gnl|Mm7|chr5 (31453153-31453487) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 117-280, gnl|bosTau2|chr7 (20858990-20859152) | |
| 117-280, gnl|canFam2|chr11 (23580914-23581093) | |
| 117-280, gnl|danRer3|chr13 (25825758-25825926) | |
| 117-280, gnl|dasNov1|scaffold_14050 (6494-6315) | |
| 117-280, gnl|echTel1|scaffold_323844 (27582-27758) | |
| 117-280, gnl|fr1|chrUn (144499485-144499652) | |
| 117-280, gnl|hg17|chr5 (131626181-131626360) | |
| 117-280, gnl|Hg17|chr5 (131626191-131626353) | |
| 117-280, gnl|loxAfr1|scaffold_147384 (4-155) | |
| 117-280, gnl|mm7|chr11 (54020565-54020386) | |
| 117-280, gnl|Mm7|chr11 (54020553-54020391) | |
| 117-280, gnl|oryCun1|scaffold_181949 (78719-78898) | |
| 117-280, gnl|panTro1|chr4 (137959224-137959403) | |
| 117-280, gnl|rheMac2|chr6 (128676656-128676835) | |
| 117-280, gnl|rn3|chr1 (245474120-245473956) | |
| 117-280, gnl|tetNig1|chr7 (8441818-8441673) | |
| 357-543, gnl|bosTau2|chr7 (20867316-20867502) | |
| 357-543, gnl|Hg17|chr5 (131634502-131634685) | |
| 357-543, gnl|Mm7|chr11 (54013086-54012900) | |
| 677-1010, gnl|bosTau2|chr18 (15851359-15851693) | |
| 677-1010, gnl|Hg17|chr14 (49587469-49587803) | |
| 677-1010, gnl|Mm7|chr5 (31453153-31453487) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| cov (0.396458) | |
| nep (0.36785) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| nco (0.161734) | |
| ese (0.126502) | |
| clu (0.119646) | |
| jca (0.11396) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.396458) | |
| nep (0.36785) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| nco (0.161734) | |
| ese (0.126502) | |
| clu (0.119646) | |
| jca (0.11396) |