Non-Coding RNA Search

Ss1.1-Utr1-UTR010038C08.5.5

Sequence:


               
               CCCAGACCCGGAGGCTGAGGATCATGGGGCCCCGAGGCCTCTTCCTGCTGCTCTCGGGGA
CCCTGGCCCTGACCGGGACCCAGGCGGGTCCCCACTCCCTGAGCTATTTCTACACCGCCG
TGTCCCGGCCCGACCGCGGGGACTCCCGCTTCATCGCCGTCGGCTACGTGGACGACACGC
AGTTCGTGCGGTTCGACAGCGACGCCCCGAATCCGAGGGAGGAGCCGCGGGCGCCGTGGA
TACAGCAGGAGGGGCAGGAGTATTGGGATAGGAACACGCAGATTTACAAGGAAACCGCAC
AGACTTACCGAGTGAGCCTGAACAACCTGCGCGGCTACTACAACCAGAGCGAGGCCGGGT
CTCACACCATCCAGAGCATGTACGGCTGCGACGTGGGGCCAGACGGGCTCCTCCTCCGCG
GGTACAGACAGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACCTGCGCT
CCTGGACCGCGGCGGACACGGCGGCTCAGATCACCAAGCGCAAGAGGGAGGCGGCCGATG
TGGCGGAGCGCATGAGGAGCTACCTGCAGGGCACGTGTGTGGAGTGGCTCCAGAAATACC
TGGAGATGGGGAATAACACGCTGCAGCGCGCAGACCCTCCAAAGACACATGTGACCCGCC
ACCCCAGCTCTGACCTGGGGGTCACCTTGAGGTGCTGGGCCCTGGGCTTCTACCCTAAGG
AGATCTCCCTGACCTGGCAGCGGGAGGGCCAGGACCAGAGCCAGGACATGGAGCTGGTGG
AGACCAGGCCCTCAGGGGATGGGACCTTCCAGAAGTGGGCGGCCCTGGTGGTGCCTCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGACCCGGAGGCTGAGGATCATGGGGCCCCGAGGCCTCTTCCTGCTGCTCTCGGGGA
CCCTGGCCCTGACCGGGACCCAGGCGGGTCCCCACTCCCTGAGCTATTTCTACACCGCCG
TGTCCCGGCCCGACCGCGGGGACTCCCGCTTCATCGCCGTCGGCTACGTGGACGACACGC
AGTTCGTGCGGTTCGACAGCGACGCCCCGAATCCGAGGGAGGAGCCGCGGGCGCCGTGGA
TACAGCAGGAGGGGCAGGAGTATTGGGATAGGAACACGCAGATTTACAAGGAAACCGCAC
AGACTTACCGAGTGAGCCTGAACAACCTGCGCGGCTACTACAACCAGAGCGAGGCCGGGT
CTCACACCATCCAGAGCATGTACGGCTGCGACGTGGGGCCAGACGGGCTCCTCCTCCGCG
GGTACAGACAGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACCTGCGCT
CCTGGACCGCGGCGGACACGGCGGCTCAGATCACCAAGCGCAAGAGGGAGGCGGCCGATG
TGGCGGAGCGCATGAGGAGCTACCTGCAGGGCACGTGTGTGGAGTGGCTCCAGAAATACC
TGGAGATGGGGAATAACACGCTGCAGCGCGCAGACCCTCCAAAGACACATGTGACCCGCC
ACCCCAGCTCTGACCTGGGGGTCACCTTGAGGTGCTGGGCCCTGGGCTTCTACCCTAAGG
AGATCTCCCTGACCTGGCAGCGGGAGGGCCAGGACCAGAGCCAGGACATGGAGCTGGTGG
AGACCAGGCCCTCAGGGGATGGGACCTTCCAGAAGTGGGCGGCCCTGGTGGTGCCTCCTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|51507653|emb|CAE46352.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51507653|emb|CAE46352.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               91-358, gnl|bosTau2|chr23 (20551142-20551409)
               

               
               91-358, gnl|Hg17|chr6 (31432710-31432443)
               

               
               91-358, gnl|Mm7|chr17 (33358731-33358998)
               


               
               391-641, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               391-641, gnl|Hg17|chr6 (31347071-31346829)
               

               
               391-641, gnl|Mm7|chr17 (32077846-32077606)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-358, gnl|bosTau2|chr23 (20551142-20551409)
               

               
               91-358, gnl|Hg17|chr6 (31432710-31432443)
               

               
               91-358, gnl|Mm7|chr17 (33358731-33358998)
               


               
               391-641, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               391-641, gnl|Hg17|chr6 (31347071-31346829)
               

               
               391-641, gnl|Mm7|chr17 (32077846-32077606)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ill (1.58033)
               

               
               nca (0.273748)
               

               
               col (0.195008)
               

               
               csp (0.161186)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (1.58033)
               

               
               nca (0.273748)
               

               
               col (0.195008)
               

               
               csp (0.161186)

	91-358, gnl\|bosTau2\|chr23 (20551142-20551409)
	91-358, gnl\|Hg17\|chr6 (31432710-31432443)
	91-358, gnl\|Mm7\|chr17 (33358731-33358998)

	391-641, gnl\|bosTau2\|chr20 (36655627-36655873)
	391-641, gnl\|Hg17\|chr6 (31347071-31346829)
	391-641, gnl\|Mm7\|chr17 (32077846-32077606)