Non-Coding RNA Search

Ss1.1-Utr1-UTR010038C09.5.5

Sequence:


               
               GTGGAGGAGCTCTTTCTGGGTGACATCCACACGGACGCCTCCCAGAGGATGTTCTACCGG
CCGTCCAGCTACCAGCCGCCCCTGCAGAACGCCAAGAACCACGACCACGCCTGCATCGCC
TGCCGAATCATCCACCGGTCTGACGAGCACCGGCCGCCGCTGCTGCCCCCGCAGGCGGAC
CTGACGGTGGGCCTGCATGGCGAGTGGGTGAGCCAGCGCTGCGAGGTGCGGCCTGAGGTC
CTCTTCCTCACCCGCCACTTCATCTTCCATGACAACAACCACACCTGGGAGGGACACTAC
TACCACTACTCAGACCCCGTGTGCAAGCACCCCACCTTCACCATCTATGCCAAGGGCCGC
TACAGCCGTGGTGTGCACTCCACCAGGGTCATGGGCGGCACGGAGTTTGTGTTCAAAGTG
AACCACATGAAGGTCACCCCCATGGATGCGGCCACCGCCTCACTCCTCAATGTCTTCAAT
GGCAACGAGTGCGGGGCCGAGGGCTCCTGGCAGGTGGGCATCCAGCAGGACGTGACCCAC
ACCAACGGCTGCGTGGCGCTGGGCATCAAACTGCCTCACACAGAGTACGAGATCTTCAAA
ATGGAGCGAGACACCCGGGGCCGCTACCTACTGTTCAACGGCCAGAGGCCCAGCGACGGC
TCCAGCCCGGACAGGCCCGAGAAGAGGGCCACGTCCTACCAGATGCCCTTGGTCCAGTGC
GCCTCGTCCACACCCAGGGCCGAGGACTTCGCTGAGGACCACGGGCAGCGTCAGCACCGG
AGCTGGGCGCCCAGGGGCAGCACATGTCCCCTGCTGCTGGCCGGCCTTGCCTGCCTTTGG
ACTCTGCTGCCCTGGCTCGGCCTCACATAGAGGTTCTTACAGAGTTTTATTTTTCCAAAC
CGGGATTCCTTACAATGTACAGATTTTCTTTACGAGAAGAAAAGACACTTCCTCCTTGGA
CACACTTGAGAAGGGTCCTCTTTCCCGCCCACCCTGCCCACCGGTCTGGGTCAGGAGTGA
TTTGAAGTTTCTGCTCTGAACTTGGTCCAGTCGGATCTGGGGCTGGGCGGCCTCATGACA
TAATCGCACTTTACAAGCGCAGAGGGTTCCGGGCAGTGTGTTGGCAGAGGGTGAGGGGGC
AGCTACTCCCCCCCTTCCTCCTTGTCATCACTGCACTTGGGGCGGGACTTAGGGAGAACA
GACACCCCGCTTCAACTTTCCTGCTGCTTCTCTGCAGTTGCCTCCTGTCCTCCTTGGAAC
CTGTTTGCCTCTCCGAGTTTTCCAGCCTGGAATCTGGAGGCGAGCAGGTTTGGGACCCCG
ACCCAGACACATTGTATTAACCTAAGAAGAGCCGTCAGAAGACAAAGTGGAGTGGGACCC
CCTTTACAGCCTTTATGAAAGAGAGTGAATCCACACTTGCCAGTGGTGAAAAGTGTCTGT
AATTAAAGTTTCAGAGTAATTGAAAGAATGGCTATTTTGACTTGCTGGGAGAGGAGCTGT
GGGTTCTGCGCTGGTTCCGGAGTGGGGGCTGCGGAGCACACCGCTCCTACCTGCCCTGTG
GATGGTGCGGTGGAGCACCTGTCAGAAGCTGTCCCACTACAGATGGACAGGAGGTGACAG
TGCAATGGTGACCTAAGTAATAGGGAGCCCATTCCGTCTGGTCCTGGCTCACATGGTGTC
TAGCTTTGGGTGAGCAGACGGAGTCACTTTGCCGTCTCTGTAACCCCACTGACGGATATG
CAGAGACCATGCTGGGGTTGTCCTGGTCGGGGCTCGCCTAGACTGTCCATCCTCCTTCCC
AGACAGGACAGGCTGGTCGCCGCAGGGAGTGTCAGGGCACCTTAGCCTCTGTGAGTTTCC
TTCTCACAGATGCCCGGAGGGTGCATGAGTCATGTCTGTCCGGCACTTTGGGTTTTTACA
AATGGTGCCATCTGAACACCAAGGTGGCCTCCAGGAGAAACTGATGGCGGGAAATGGTGA
GTAACCAATCAACAGGCCGGAAACCATGATCGAGGTCAAGAGTCACACCTGTATTTAAGA
ATCACCTTTTTGCAGTGCTGCAGGGCTAGGTTCTAAGGGTGGCGTGTCGTACCAGAGTGC
TTTATCTTTACATGATGTTTTATGTTGCGGTGCATACTGAGGGGGTTTCAAATGAAAGTA
CTAACTTAATGTCTTCCAAATTTCATAAACAGAGATGTCAACAAGACTCCCACGAAATAC
ATTTTACCTGTGGATCTATTTAATACTAATGCTATCTTTAAAGGAAATAATAAAATTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGAGGAGCTCTTTCTGGGTGACATCCACACGGACGCCTCCCAGAGGATGTTCTACCGG
CCGTCCAGCTACCAGCCGCCCCTGCAGAACGCCAAGAACCACGACCACGCCTGCATCGCC
TGCCGAATCATCCACCGGTCTGACGAGCACCGGCCGCCGCTGCTGCCCCCGCAGGCGGAC
CTGACGGTGGGCCTGCATGGCGAGTGGGTGAGCCAGCGCTGCGAGGTGCGGCCTGAGGTC
CTCTTCCTCACCCGCCACTTCATCTTCCATGACAACAACCACACCTGGGAGGGACACTAC
TACCACTACTCAGACCCCGTGTGCAAGCACCCCACCTTCACCATCTATGCCAAGGGCCGC
TACAGCCGTGGTGTGCACTCCACCAGGGTCATGGGCGGCACGGAGTTTGTGTTCAAAGTG
AACCACATGAAGGTCACCCCCATGGATGCGGCCACCGCCTCACTCCTCAATGTCTTCAAT
GGCAACGAGTGCGGGGCCGAGGGCTCCTGGCAGGTGGGCATCCAGCAGGACGTGACCCAC
ACCAACGGCTGCGTGGCGCTGGGCATCAAACTGCCTCACACAGAGTACGAGATCTTCAAA
ATGGAGCGAGACACCCGGGGCCGCTACCTACTGTTCAACGGCCAGAGGCCCAGCGACGGC
TCCAGCCCGGACAGGCCCGAGAAGAGGGCCACGTCCTACCAGATGCCCTTGGTCCAGTGC
GCCTCGTCCACACCCAGGGCCGAGGACTTCGCTGAGGACCACGGGCAGCGTCAGCACCGG
AGCTGGGCGCCCAGGGGCAGCACATGTCCCCTGCTGCTGGCCGGCCTTGCCTGCCTTTGG
ACTCTGCTGCCCTGGCTCGGCCTCACATAGAGGTTCTTACAGAGTTTTATTTTTCCAAAC
CGGGATTCCTTACAATGTACAGATTTTCTTTACGAGAAGAAAAGACACTTCCTCCTTGGA
CACACTTGAGAAGGGTCCTCTTTCCCGCCCACCCTGCCCACCGGTCTGGGTCAGGAGTGA
TTTGAAGTTTCTGCTCTGAACTTGGTCCAGTCGGATCTGGGGCTGGGCGGCCTCATGACA
TAATCGCACTTTACAAGCGCAGAGGGTTCCGGGCAGTGTGTTGGCAGAGGGTGAGGGGGC
AGCTACTCCCCCCCTTCCTCCTTGTCATCACTGCACTTGGGGCGGGACTTAGGGAGAACA
GACACCCCGCTTCAACTTTCCTGCTGCTTCTCTGCAGTTGCCTCCTGTCCTCCTTGGAAC
CTGTTTGCCTCTCCGAGTTTTCCAGCCTGGAATCTGGAGGCGAGCAGGTTTGGGACCCCG
ACCCAGACACATTGTATTAACCTAAGAAGAGCCGTCAGAAGACAAAGTGGAGTGGGACCC
CCTTTACAGCCTTTATGAAAGAGAGTGAATCCACACTTGCCAGTGGTGAAAAGTGTCTGT
AATTAAAGTTTCAGAGTAATTGAAAGAATGGCTATTTTGACTTGCTGGGAGAGGAGCTGT
GGGTTCTGCGCTGGTTCCGGAGTGGGGGCTGCGGAGCACACCGCTCCTACCTGCCCTGTG
GATGGTGCGGTGGAGCACCTGTCAGAAGCTGTCCCACTACAGATGGACAGGAGGTGACAG
TGCAATGGTGACCTAAGTAATAGGGAGCCCATTCCGTCTGGTCCTGGCTCACATGGTGTC
TAGCTTTGGGTGAGCAGACGGAGTCACTTTGCCGTCTCTGTAACCCCACTGACGGATATG
CAGAGACCATGCTGGGGTTGTCCTGGTCGGGGCTCGCCTAGACTGTCCATCCTCCTTCCC
AGACAGGACAGGCTGGTCGCCGCAGGGAGTGTCAGGGCACCTTAGCCTCTGTGAGTTTCC
TTCTCACAGATGCCCGGAGGGTGCATGAGTCATGTCTGTCCGGCACTTTGGGTTTTTACA
AATGGTGCCATCTGAACACCAAGGTGGCCTCCAGGAGAAACTGATGGCGGGAAATGGTGA
GTAACCAATCAACAGGCCGGAAACCATGATCGAGGTCAAGAGTCACACCTGTATTTAAGA
ATCACCTTTTTGCAGTGCTGCAGGGCTAGGTTCTAAGGGTGGCGTGTCGTACCAGAGTGC
TTTATCTTTACATGATGTTTTATGTTGCGGTGCATACTGAGGGGGTTTCAAATGAAAGTA
CTAACTTAATGTCTTCCAAATTTCATAAACAGAGATGTCAACAAGACTCCCACGAAATAC
ATTTTACCTGTGGATCTATTTAATACTAATGCTATCTTTAAAGGAAATAATAAAATTATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q71M25_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q71M25_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               410-529, + strand, RNAz p=0.905406

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               410-529, + strand, RNAz p=0.905406

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               105-713, gnl|bosTau2|chr13 (39222811-39223419)
               

               
               105-713, gnl|Hg17|chr20 (56470007-56469400)
               

               
               105-713, gnl|Mm7|chr2 (173538566-173537950)
               


               
               2001-2280, gnl|bosTau2|chr24 (29890882-29890603)
               

               
               2001-2280, gnl|Hg17|chr18 (10479434-10479934)
               

               
               2001-2280, gnl|Mm7|chr18 (63343040-63343302)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               105-713, gnl|bosTau2|chr13 (39222811-39223419)
               

               
               105-713, gnl|Hg17|chr20 (56470007-56469400)
               

               
               105-713, gnl|Mm7|chr2 (173538566-173537950)
               


               
               2001-2280, gnl|bosTau2|chr24 (29890882-29890603)
               

               
               2001-2280, gnl|Hg17|chr18 (10479434-10479934)
               

               
               2001-2280, gnl|Mm7|chr18 (63343040-63343302)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               fce (0.543183)
               

               
               eep (0.490256)
               

               
               ece (0.45861)
               

               
               amn (0.417711)
               

               
               fbs (0.350693)
               

               
               pla (0.267344)
               

               
               cmu (0.186393)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               cly (0.120642)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               eep (0.490256)
               

               
               ece (0.45861)
               

               
               amn (0.417711)
               

               
               fbs (0.350693)
               

               
               pla (0.267344)
               

               
               cmu (0.186393)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               cly (0.120642)

	105-713, gnl\|bosTau2\|chr13 (39222811-39223419)
	105-713, gnl\|Hg17\|chr20 (56470007-56469400)
	105-713, gnl\|Mm7\|chr2 (173538566-173537950)

	2001-2280, gnl\|bosTau2\|chr24 (29890882-29890603)
	2001-2280, gnl\|Hg17\|chr18 (10479434-10479934)
	2001-2280, gnl\|Mm7\|chr18 (63343040-63343302)

	fce (0.543183)
	eep (0.490256)
	ece (0.45861)
	amn (0.417711)
	fbs (0.350693)
	pla (0.267344)
	cmu (0.186393)
	fat (0.147427)
	ski (0.146735)
	csk (0.140746)
	cst (0.140036)
	ova (0.129132)
	sug (0.127291)
	ese (0.126502)
	cly (0.120642)