Ss1.1-Utr1-UTR010038F02.5
|
CTGCAGCACTTCCGGGTCGGCGCGGAGGCGGGGCGGAGGCGCCGCGAAGGCTGTTATTGT
TCGACTGAGCTGGGCCGGGCGCTGTCTCCCTGGTCTCCGTGGGTATCGGTTTGTCGCGCT
TCAGCTCGGCCCCTCTCGCCTGTCGGTTCGTCCCGCTTCCTCTCGGCACCTCGCTCCCCA
CGGCTGACGGCGACGGCGGCGGCTGCGGCGGGCGGGGCCTGGCGTTTCAAGGCCGAGCGG
CGCCGGGGTGAGGGGCGCGGAGGAGGAGGAGCAGTAGCAGGAGGAGGAGCCGTGTGCCCT
GGCACCAAGCGGCCGCGGCCATGGCGTACGCCTATCTCTTCAAGTACATCATCATCGGCG
ACACAGGTGTTGGTAAATCATGCTTATTGCTACAGTTTACAGACAAGAGGTTTCAGCCAG
TGCATGACCTTACTATCGGTGTAGAGTTTGGTGCTCGAATGATAACTATTGATGGGAAAC
AGATAAAACTTCAAATATGGGATACGGCAGGGCAAGAGTCCTTTCGTTCCATCACGAGGT
CATATTACAGAGGTGCGGCGGGGGCTTTACTAGTGTATGATATTACAAGGAGAGACACAT
TCAACCACTTGACAACCTGGTTAGAAGATGCCCGCCAGCATTCCAATTCCAACATGGTCA
TTATGCTTATTGGAAATAAAAGTGATTTAGAATCTAGAAGAGAAGTAAAAAAAGAAGAAG
GTGAAGCTTTTGCACGAGAACATGGACTTATCTTCATGGAAACTTCTGCTAAGACTGCTT
CGAATGTAGAAGAGGCATTTATTAATACAGCAAAAGAAATTTATGAAAAAATCCAAGAAG
GAGTCTTTGACATTAATAATGAGGCAAATGGCATTAAGATTGGCCCCCAGCACGCTGCTA
CTAACGCCACCCACGCAGGCAGTCAGGGAGGACAGCAGGCCGGCGGAGGCTGCTGTTGAG
TCTATTTTTACGTCTGGCTGCCCAAACGGGGCCACTCGCCCATTCTTTGACCCTCTCCTC
CTGCCCAGCTGAGACATGAAACTATTCAAAATGGCTTTATGTCACAGAAGACTTTAATCC
TTCAAATTCTTGTATAACTTTGAATAAATGGTTAATGTTCACTTAAAAAGACAGATTTTG
GAGATTGTATTCATATCTATTTGCATTTGATTTCTAGGTCAATTGATGTGATTATTTTTG
TTAAATGTTGTCTTGTGCCCTTACCTACAAACTGAATTGTATTAAACACTACAAAGTCAT
CTTGAGTATTTTAACTTGGTTTGTGTAGTTAGGTTTCCCCACACCTGTGGTTACCTAATG
TTTAATATTACAGGACTGTCCTCAAAAGTTTGTCAATTTTCAAGGCTATAAGGAAAACAG
AAGGACTCTTTTAATTCTGTATTTATCATTTACTTTCTGTATATATAGTTTAATATCCTG
CTTGGGTGTCATTTGCCAAGCTTGAATTCTTTAATGCATTTGCATAAATTCTATACTGTT
TAGAGCTTAAAGCTACAGAAGCTTCGTTAGGAATTGCTTGGACCCTGAATTTTAAACTTT
TCGACATTGGTAACAAGCATGTTCATCTTTTCTGTCACTCGTCCAAGAAAAATATGCTTA
ATGTACATTACTAAAGGCTATGTATGTGTTAACCTGTTTTAATGCCAAAAGTTTGCTATT
TGTCCACCATTTCTTTAAGACCTCTTCAGAAAAGGATGTGTTTGTTTGCCTTAATGAACA
CTGTTGGGTGAAAACACAGTATGAAGAGTGAGATGGGCGGAAGCAAGGACTCCTTCCACC
TGAGTGGCTCCAGGAAGCAGGAGTGTCCACGTTTAGACGGCACATTATGAGGACTTTAAT
CTTTCCTTAAACACAATAATGTTTTCTTTTTCTTTTATTCACATGATTTCTAAGTATATT
TTTCACGCAGGACAGTTTTTCAACCTTGATGTACAGTGACTGTGTGAGATTTTTCTTTCA
GTGGCAACCTATAATCTTTAAAATACGGTAAGCATCTTGTCTGTTTCGAAGGGGATATGA
CAATAAATCTACCAGATGGAAAATCCTGTTAAAAGTAGAAAAGCTTTAGTATTTTACTCA
GTGTGGTGGTTTTATCCTTCTTTTTCTTTTTCTCCCTTGGTCTATAATGAATTGTTATAG
CAGTACAAAATAAAATCCTATGTATAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTGCAGCACTTCCGGGTCGGCGCGGAGGCGGGGCGGAGGCGCCGCGAAGGCTGTTATTGT
TCGACTGAGCTGGGCCGGGCGCTGTCTCCCTGGTCTCCGTGGGTATCGGTTTGTCGCGCT
TCAGCTCGGCCCCTCTCGCCTGTCGGTTCGTCCCGCTTCCTCTCGGCACCTCGCTCCCCA
CGGCTGACGGCGACGGCGGCGGCTGCGGCGGGCGGGGCCTGGCGTTTCAAGGCCGAGCGG
CGCCGGGGTGAGGGGCGCGGAGGAGGAGGAGCAGTAGCAGGAGGAGGAGCCGTGTGCCCT
GGCACCAAGCGGCCGCGGCCATGGCGTACGCCTATCTCTTCAAGTACATCATCATCGGCG
ACACAGGTGTTGGTAAATCATGCTTATTGCTACAGTTTACAGACAAGAGGTTTCAGCCAG
TGCATGACCTTACTATCGGTGTAGAGTTTGGTGCTCGAATGATAACTATTGATGGGAAAC
AGATAAAACTTCAAATATGGGATACGGCAGGGCAAGAGTCCTTTCGTTCCATCACGAGGT
CATATTACAGAGGTGCGGCGGGGGCTTTACTAGTGTATGATATTACAAGGAGAGACACAT
TCAACCACTTGACAACCTGGTTAGAAGATGCCCGCCAGCATTCCAATTCCAACATGGTCA
TTATGCTTATTGGAAATAAAAGTGATTTAGAATCTAGAAGAGAAGTAAAAAAAGAAGAAG
GTGAAGCTTTTGCACGAGAACATGGACTTATCTTCATGGAAACTTCTGCTAAGACTGCTT
CGAATGTAGAAGAGGCATTTATTAATACAGCAAAAGAAATTTATGAAAAAATCCAAGAAG
GAGTCTTTGACATTAATAATGAGGCAAATGGCATTAAGATTGGCCCCCAGCACGCTGCTA
CTAACGCCACCCACGCAGGCAGTCAGGGAGGACAGCAGGCCGGCGGAGGCTGCTGTTGAG
TCTATTTTTACGTCTGGCTGCCCAAACGGGGCCACTCGCCCATTCTTTGACCCTCTCCTC
CTGCCCAGCTGAGACATGAAACTATTCAAAATGGCTTTATGTCACAGAAGACTTTAATCC
TTCAAATTCTTGTATAACTTTGAATAAATGGTTAATGTTCACTTAAAAAGACAGATTTTG
GAGATTGTATTCATATCTATTTGCATTTGATTTCTAGGTCAATTGATGTGATTATTTTTG
TTAAATGTTGTCTTGTGCCCTTACCTACAAACTGAATTGTATTAAACACTACAAAGTCAT
CTTGAGTATTTTAACTTGGTTTGTGTAGTTAGGTTTCCCCACACCTGTGGTTACCTAATG
TTTAATATTACAGGACTGTCCTCAAAAGTTTGTCAATTTTCAAGGCTATAAGGAAAACAG
AAGGACTCTTTTAATTCTGTATTTATCATTTACTTTCTGTATATATAGTTTAATATCCTG
CTTGGGTGTCATTTGCCAAGCTTGAATTCTTTAATGCATTTGCATAAATTCTATACTGTT
TAGAGCTTAAAGCTACAGAAGCTTCGTTAGGAATTGCTTGGACCCTGAATTTTAAACTTT
TCGACATTGGTAACAAGCATGTTCATCTTTTCTGTCACTCGTCCAAGAAAAATATGCTTA
ATGTACATTACTAAAGGCTATGTATGTGTTAACCTGTTTTAATGCCAAAAGTTTGCTATT
TGTCCACCATTTCTTTAAGACCTCTTCAGAAAAGGATGTGTTTGTTTGCCTTAATGAACA
CTGTTGGGTGAAAACACAGTATGAAGAGTGAGATGGGCGGAAGCAAGGACTCCTTCCACC
TGAGTGGCTCCAGGAAGCAGGAGTGTCCACGTTTAGACGGCACATTATGAGGACTTTAAT
CTTTCCTTAAACACAATAATGTTTTCTTTTTCTTTTATTCACATGATTTCTAAGTATATT
TTTCACGCAGGACAGTTTTTCAACCTTGATGTACAGTGACTGTGTGAGATTTTTCTTTCA
GTGGCAACCTATAATCTTTAAAATACGGTAAGCATCTTGTCTGTTTCGAAGGGGATATGA
CAATAAATCTACCAGATGGAAAATCCTGTTAAAAGTAGAAAAGCTTTAGTATTTTACTCA
GTGTGGTGGTTTTATCCTTCTTTTTCTTTTTCTCCCTTGGTCTATAATGAATTGTTATAG
CAGTACAAAATAAAATCCTATGTATAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
681-795, gnl|bosTau2|chr10 (16020542-16020428) |
|
681-795, gnl|canFam2|chr15 (21504221-21504368) |
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681-795, gnl|danRer3|chr2 (10740203-10740086) |
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681-795, gnl|dasNov1|scaffold_81287 (2292-2144) |
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681-795, gnl|echTel1|scaffold_307174 (18744-18892) |
|
681-795, gnl|fr1|chrUn (239914148-239914021) |
|
681-795, gnl|hg17|chr14 (21001629-21001776) |
|
681-795, gnl|Hg17|chr14 (21001768-21001654) |
|
681-795, gnl|loxAfr1|scaffold_28224 (7937-7809) |
|
681-795, gnl|mm7|chr14 (47599849-47599991) |
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681-795, gnl|Mm7|chr14 (47599983-47599869) |
|
681-795, gnl|monDom2|scaffold_12 (29045648-29045503) |
|
681-795, gnl|oryCun1|scaffold_104876 (1523-1376) |
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681-795, gnl|panTro1|chr15 (19918584-19918731) |
|
681-795, gnl|rheMac2|chr7 (84188912-84189059) |
|
681-795, gnl|rn3|chr15 (27727529-27727671) |
|
681-795, gnl|tetNig1|chrUn_random (90511522-90511403) |
| |
|
862-2190, gnl|bosTau2|chr14 (14744766-14746086) |
|
862-2190, gnl|Hg17|chr8 (61695785-61697113) |
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862-2190, gnl|Mm7|chr4 (8533553-8534856) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
681-795, gnl|bosTau2|chr10 (16020542-16020428) |
|
681-795, gnl|canFam2|chr15 (21504221-21504368) |
|
681-795, gnl|danRer3|chr2 (10740203-10740086) |
|
681-795, gnl|dasNov1|scaffold_81287 (2292-2144) |
|
681-795, gnl|echTel1|scaffold_307174 (18744-18892) |
|
681-795, gnl|fr1|chrUn (239914148-239914021) |
|
681-795, gnl|hg17|chr14 (21001629-21001776) |
|
681-795, gnl|Hg17|chr14 (21001768-21001654) |
|
681-795, gnl|loxAfr1|scaffold_28224 (7937-7809) |
|
681-795, gnl|mm7|chr14 (47599849-47599991) |
|
681-795, gnl|Mm7|chr14 (47599983-47599869) |
|
681-795, gnl|monDom2|scaffold_12 (29045648-29045503) |
|
681-795, gnl|oryCun1|scaffold_104876 (1523-1376) |
|
681-795, gnl|panTro1|chr15 (19918584-19918731) |
|
681-795, gnl|rheMac2|chr7 (84188912-84189059) |
|
681-795, gnl|rn3|chr15 (27727529-27727671) |
|
681-795, gnl|tetNig1|chrUn_random (90511522-90511403) |
| |
|
862-2190, gnl|bosTau2|chr14 (14744766-14746086) |
|
862-2190, gnl|Hg17|chr8 (61695785-61697113) |
|
862-2190, gnl|Mm7|chr4 (8533553-8534856) |
|
cbe (2.15311) |
|
ret (1.5448) |
|
lyg (1.19792) |
|
gul (1.06553) |
|
mga (0.96123) |
|
tbr (0.925069) |
|
spc (0.906927) |
|
bfe (0.899146) |
|
lin (0.873617) |
|
tra (0.861645) |
|
aor (0.781097) |
|
isp (0.75188) |
|
vin (0.665115) |
|
hea (0.613497) |
|
pgl (0.592417) |
|
hyp (0.571347) |
|
sto (0.539471) |
|
nco (0.485201) |
|
fco (0.471624) |
|
ecc (0.46014) |
|
fat (0.442282) |
|
liv (0.438853) |
|
amn (0.417711) |
|
cty (0.41632) |
|
ssp (0.406559) |
|
ste (0.405625) |
|
fcc (0.39557) |
|
kid (0.389206) |
|
ova (0.387397) |
|
elu (0.385356) |
|
sug (0.381874) |
|
cmu (0.372787) |
|
eru (0.360144) |
|
nje (0.33184) |
|
cje (0.330469) |
|
sme (0.305437) |
|
eli (0.303628) |
|
lun (0.300978) |
|
ski (0.29347) |
|
cte (0.29274) |
|
spl (0.286369) |
|
csk (0.281492) |
|
nca (0.273748) |
|
che (0.272628) |
|
ute (0.265569) |
|
bla (0.248694) |
|
eep (0.245128) |
|
cly (0.241284) |
|
ebs (0.236602) |
|
pan (0.23596) |
|
med (0.232504) |
|
nbm (0.198649) |
|
col (0.195008) |
|
ldo (0.194005) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
sag (0.182715) |
|
fty (0.17584) |
|
ill (0.175593) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
rec (0.17307) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
cki (0.165235) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
thg (0.126791) |
|
ese (0.126502) |
|
clu (0.119646) |
|
jca (0.11396) |
|
cbe (2.15311) |
|
ret (1.5448) |
|
lyg (1.19792) |
|
gul (1.06553) |
|
mga (0.96123) |
|
tbr (0.925069) |
|
spc (0.906927) |
|
bfe (0.899146) |
|
lin (0.873617) |
|
tra (0.861645) |
|
aor (0.781097) |
|
isp (0.75188) |
|
vin (0.665115) |
|
hea (0.613497) |
|
pgl (0.592417) |
|
hyp (0.571347) |
|
sto (0.539471) |
|
nco (0.485201) |
|
fco (0.471624) |
|
ecc (0.46014) |
|
fat (0.442282) |
|
liv (0.438853) |
|
amn (0.417711) |
|
cty (0.41632) |
|
ssp (0.406559) |
|
ste (0.405625) |
|
fcc (0.39557) |
|
kid (0.389206) |
|
ova (0.387397) |
|
elu (0.385356) |
|
sug (0.381874) |
|
cmu (0.372787) |
|
eru (0.360144) |
|
nje (0.33184) |
|
cje (0.330469) |
|
sme (0.305437) |
|
eli (0.303628) |
|
lun (0.300978) |
|
ski (0.29347) |
|
cte (0.29274) |
|
spl (0.286369) |
|
csk (0.281492) |
|
nca (0.273748) |
|
che (0.272628) |
|
ute (0.265569) |
|
bla (0.248694) |
|
eep (0.245128) |
|
cly (0.241284) |
|
ebs (0.236602) |
|
pan (0.23596) |
|
med (0.232504) |
|
nbm (0.198649) |
|
col (0.195008) |
|
ldo (0.194005) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
sag (0.182715) |
|
fty (0.17584) |
|
ill (0.175593) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
rec (0.17307) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
cki (0.165235) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
thg (0.126791) |
|
ese (0.126502) |
|
clu (0.119646) |
|
jca (0.11396) |
