Non-Coding RNA Search

Ss1.1-Utr1-UTR010038F11.5

Sequence:


               
               GCCGCCGCTGGGCTCAGCGCGAGCCCCAGAGCCCTTGAGCGGGAGACGCGGAGCCCCCGG
AGCCCCCAAACCACAGCCACCTCCCCGCCTCGCGCGACCGGGAGCCCCGGCCTGCGCGCT
CCGCCGGGCCTGTGCGATGCCCTCAGACCGGCCTTTCAAGCAGCGGCGGAGCTTCGCCGA
CCGCCGTAAGGAGGTGCAGCAGATCCGCGACCAGCACCCTAGCAAGATCCCGGTGATCAT
CGAGCGCTACAAGGGTGAGAAGCAGCTGCCAGTCCTGGACAAGACCAAGTTCCTGGTCCC
AGACCATGTCAACATGAGCGAGTTGGTCAAGATCATCCGGCGCCGCCTGCAGCTGAACCC
CACGCAGGCCTTCTTCCTGCTGGTGAACCAGCACAGCATGGTGAGCGTGTCCACGCCCAT
CGCGGACATCTATGAGCAGGAGAAGGATGAGGATGGCTTCCTCTACATGGTCTACGCCTC
CCAGGAAACCTTCGGCTTCTGAGCCAGCAGTAGGGGGTGTTGGCTGGGAGTCGGGGGCCC
TGTCAGGCTCTGCCCAGGGAGCTCCTGGCACTGGAACTAAGCTGTCTCTGCCCCTGCCCC
TGGTGGGTTGGACAGGGATGCTGCCACCCAGCCAGAGGGCACCTATCACCCCTACTCTGC
CCCTGGATGGATTCTGGCCCAGTCATATTAGGGTTGCCCCTCCGGGTGCTGGCTGGGAGG
GGGAAGAGTGGGAAGCAGCCCCCAGCACCCCTGCCCTGTGTGGTTTGTCTTTTTTTTAGA
CCCCTGCCTGTCTGCCCACCTGTCCCTCCCCAACCTGAGGCGCTGCCCATGCCTGGATCT
GCCCACCCCTGAAGGACTGGGTCCTGGCTCACCTGGTCTTGACATGGTGTATGGCTCTGT
GGTCATTGTCCCTTTGCAGAATAAAGATTGCTCAGGCCTGAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCCGCTGGGCTCAGCGCGAGCCCCAGAGCCCTTGAGCGGGAGACGCGGAGCCCCCGG
AGCCCCCAAACCACAGCCACCTCCCCGCCTCGCGCGACCGGGAGCCCCGGCCTGCGCGCT
CCGCCGGGCCTGTGCGATGCCCTCAGACCGGCCTTTCAAGCAGCGGCGGAGCTTCGCCGA
CCGCCGTAAGGAGGTGCAGCAGATCCGCGACCAGCACCCTAGCAAGATCCCGGTGATCAT
CGAGCGCTACAAGGGTGAGAAGCAGCTGCCAGTCCTGGACAAGACCAAGTTCCTGGTCCC
AGACCATGTCAACATGAGCGAGTTGGTCAAGATCATCCGGCGCCGCCTGCAGCTGAACCC
CACGCAGGCCTTCTTCCTGCTGGTGAACCAGCACAGCATGGTGAGCGTGTCCACGCCCAT
CGCGGACATCTATGAGCAGGAGAAGGATGAGGATGGCTTCCTCTACATGGTCTACGCCTC
CCAGGAAACCTTCGGCTTCTGAGCCAGCAGTAGGGGGTGTTGGCTGGGAGTCGGGGGCCC
TGTCAGGCTCTGCCCAGGGAGCTCCTGGCACTGGAACTAAGCTGTCTCTGCCCCTGCCCC
TGGTGGGTTGGACAGGGATGCTGCCACCCAGCCAGAGGGCACCTATCACCCCTACTCTGC
CCCTGGATGGATTCTGGCCCAGTCATATTAGGGTTGCCCCTCCGGGTGCTGGCTGGGAGG
GGGAAGAGTGGGAAGCAGCCCCCAGCACCCCTGCCCTGTGTGGTTTGTCTTTTTTTTAGA
CCCCTGCCTGTCTGCCCACCTGTCCCTCCCCAACCTGAGGCGCTGCCCATGCCTGGATCT
GCCCACCCCTGAAGGACTGGGTCCTGGCTCACCTGGTCTTGACATGGTGTATGGCTCTGT
GGTCATTGTCCCTTTGCAGAATAAAGATTGCTCAGGCCTGAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|41054834|ref|NP_955794.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|41054834|ref|NP_955794.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               3-174, gnl|bosTau2|chr13 (47363576-47363405)
               

               
               3-174, gnl|Hg17|chr20 (32610207-32610371)
               

               
               3-174, gnl|Mm7|chr2 (155017333-155017502)
               


               
               336-940, gnl|bosTau2|chr13 (47362545-47361934)
               

               
               336-940, gnl|Hg17|chr20 (32611197-32611804)
               

               
               336-940, gnl|Mm7|chr2 (155018329-155018924)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-174, gnl|bosTau2|chr13 (47363576-47363405)
               

               
               3-174, gnl|Hg17|chr20 (32610207-32610371)
               

               
               3-174, gnl|Mm7|chr2 (155017333-155017502)
               


               
               336-940, gnl|bosTau2|chr13 (47362545-47361934)
               

               
               336-940, gnl|Hg17|chr20 (32611197-32611804)
               

               
               336-940, gnl|Mm7|chr2 (155018329-155018924)

Expressed library(ies): 28 entry(ies)

More info

Expressed library(ies): 28 entry(ies)

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               fhi (0.678311)
               

               
               ebs (0.473205)
               

               
               hlv (0.417769)
               

               
               cov (0.396458)
               

               
               fcc (0.39557)
               

               
               ton (0.351)
               

               
               ecc (0.345105)
               

               
               jca (0.34188)
               

               
               hyp (0.285673)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               med (0.116252)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.678311)
               

               
               ebs (0.473205)
               

               
               hlv (0.417769)
               

               
               cov (0.396458)
               

               
               fcc (0.39557)
               

               
               ton (0.351)
               

               
               ecc (0.345105)
               

               
               jca (0.34188)
               

               
               hyp (0.285673)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               med (0.116252)

	3-174, gnl\|bosTau2\|chr13 (47363576-47363405)
	3-174, gnl\|Hg17\|chr20 (32610207-32610371)
	3-174, gnl\|Mm7\|chr2 (155017333-155017502)

	336-940, gnl\|bosTau2\|chr13 (47362545-47361934)
	336-940, gnl\|Hg17\|chr20 (32611197-32611804)
	336-940, gnl\|Mm7\|chr2 (155018329-155018924)

	fhi (0.678311)
	ebs (0.473205)
	hlv (0.417769)
	cov (0.396458)
	fcc (0.39557)
	ton (0.351)
	ecc (0.345105)
	jca (0.34188)
	hyp (0.285673)
	pty (0.285429)
	fce (0.271592)
	ece (0.229305)
	nms (0.213858)
	mas (0.210305)
	fli (0.202881)
	eje (0.197668)
	col (0.195008)
	nep (0.183925)
	ill (0.175593)
	eye (0.170503)
	nje (0.16592)
	cag (0.151194)
	nca (0.136874)
	ssp (0.13552)
	ese (0.126502)
	eep (0.122564)
	eru (0.120048)
	med (0.116252)