Non-Coding RNA Search

Ss1.1-Utr1-UTR010038G02.5

Sequence:


               
               GCCCGAGTCACGCTGCGATTGAGTCAGTTCTTTCCGCTCGGCCGCGCGCAGGTGGGGGCT
GCCACCCTCTCCGACTGCGCCTTAGTTCTGTATGCAGAAGCCCGTCATGGCTGTAACTGG
AGATGAAACAGCTGCCACTGGTGACATGCCGACTTATCAGATCCGAGCTCCGACTACTGC
TTTGCCTCAGGGAGTGGTGATGGCTGCCTCTCCGGGAAGCCTGCACAGCCCCCAGCAACT
AGCAGAGGAGGCAACACGCAAACGAGAGCTGAGGCTAATGAAAAACAGGGAAGCCGCCCG
GGAGTGTCGCAGGAAGAAGAAGGAATATGTCAAATGTCTTGAAAACCGTGTGGCTGTGCT
TGAAAACCAAAACAAGACTCTCATTGAGGAACTCAAGGCCCTCAAAGACCTTTATTGCCA
TAAAGCAGAGTAACTGGCTTTGACATGGACCTTGTTTGCCCTGAACTCTAACCCCGGCAG
GAGGTGCCGCCGTCCTGCTCATTGCCGTGTGGACTTGTGGAAGGGACCCTTGTGACCCTT
CTTAAGGAACCCAGTTGGGCTTAGTGTGTGGAAGTTGACTTGGGAATGTTGTTCCAGGAT
GCGGAAGGCAGCCGTGATCCCCGTCACCAGGCTTGCTTCAGTCGCGGTGTCAGTAGCGTG
CGAAACATGCTTTGTTTGCCCTTTTGCTTCTACTTTCTTGCAGGGAAGCTGCTAAGGAAT
GTCGCCGTCGAAAGAAAGAGTATGTCAAGTGTCTGGAGAGTCGGGTTGCAGTGCTGGAAG
TTCAGAACAAGAAGCTCATAGAGGAACTGGAAACCCTGAAAGACATTTGCTCTCCTAAAA
CAGATTAGTAGAAATATTTAACTATGAACTGACTCCCACATGTACAGTTGCTTCTGAAGG
CAATACACCATATAGCCGGCAAGAATGATGGCTTTTTTCCTTTGTGTCATTCATCATATT
TTCTAATCTCTAACATTCCCAAACTGCTTCACTGTACGTAGTTAACTCTTAGCTGTAACT
TCAGTTTTTTTTAAAAGAGACAAACTGTAAAAAAGAAAAAAAAAATGTATGTAACAGATT
CTTAAAATGCAATATTTGTAAGACTTGTTCCAATGCCACATATTTGCAGTTCCCAATCTG
TGTGTCATGAATAGTGTCCTATGCAATAAAATTTTTTGCAGGTCTTTTGAAATCACTTTA
GAAAAGGACAATCAAAGAGAATGCATCCAGCAGTACAATAAAAGTAAACCACAAAAAATA
CCTCAGGAAAGAGTCGAAAGCGAGAAAGAGTTGAAAGAACCTGATGACATGCCTATGTGA
AAATAATAGCCTATAACTGAACTTACGGCATTTGCAGATTTTTATATCAGTTGCTTTGTA
AAGAAAATACTGTATTCCTGTCCCAGAATGCCATAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCGAGTCACGCTGCGATTGAGTCAGTTCTTTCCGCTCGGCCGCGCGCAGGTGGGGGCT
GCCACCCTCTCCGACTGCGCCTTAGTTCTGTATGCAGAAGCCCGTCATGGCTGTAACTGG
AGATGAAACAGCTGCCACTGGTGACATGCCGACTTATCAGATCCGAGCTCCGACTACTGC
TTTGCCTCAGGGAGTGGTGATGGCTGCCTCTCCGGGAAGCCTGCACAGCCCCCAGCAACT
AGCAGAGGAGGCAACACGCAAACGAGAGCTGAGGCTAATGAAAAACAGGGAAGCCGCCCG
GGAGTGTCGCAGGAAGAAGAAGGAATATGTCAAATGTCTTGAAAACCGTGTGGCTGTGCT
TGAAAACCAAAACAAGACTCTCATTGAGGAACTCAAGGCCCTCAAAGACCTTTATTGCCA
TAAAGCAGAGTAACTGGCTTTGACATGGACCTTGTTTGCCCTGAACTCTAACCCCGGCAG
GAGGTGCCGCCGTCCTGCTCATTGCCGTGTGGACTTGTGGAAGGGACCCTTGTGACCCTT
CTTAAGGAACCCAGTTGGGCTTAGTGTGTGGAAGTTGACTTGGGAATGTTGTTCCAGGAT
GCGGAAGGCAGCCGTGATCCCCGTCACCAGGCTTGCTTCAGTCGCGGTGTCAGTAGCGTG
CGAAACATGCTTTGTTTGCCCTTTTGCTTCTACTTTCTTGCAGGGAAGCTGCTAAGGAAT
GTCGCCGTCGAAAGAAAGAGTATGTCAAGTGTCTGGAGAGTCGGGTTGCAGTGCTGGAAG
TTCAGAACAAGAAGCTCATAGAGGAACTGGAAACCCTGAAAGACATTTGCTCTCCTAAAA
CAGATTAGTAGAAATATTTAACTATGAACTGACTCCCACATGTACAGTTGCTTCTGAAGG
CAATACACCATATAGCCGGCAAGAATGATGGCTTTTTTCCTTTGTGTCATTCATCATATT
TTCTAATCTCTAACATTCCCAAACTGCTTCACTGTACGTAGTTAACTCTTAGCTGTAACT
TCAGTTTTTTTTAAAAGAGACAAACTGTAAAAAAGAAAAAAAAAATGTATGTAACAGATT
CTTAAAATGCAATATTTGTAAGACTTGTTCCAATGCCACATATTTGCAGTTCCCAATCTG
TGTGTCATGAATAGTGTCCTATGCAATAAAATTTTTTGCAGGTCTTTTGAAATCACTTTA
GAAAAGGACAATCAAAGAGAATGCATCCAGCAGTACAATAAAAGTAAACCACAAAAAATA
CCTCAGGAAAGAGTCGAAAGCGAGAAAGAGTTGAAAGAACCTGATGACATGCCTATGTGA
AAATAATAGCCTATAACTGAACTTACGGCATTTGCAGATTTTTATATCAGTTGCTTTGTA
AAGAAAATACTGTATTCCTGTCCCAGAATGCCATAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q63925_9MURI

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q63925_9MURI

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               286-1416, gnl|bosTau2|chr13 (8914044-8915179)
               

               
               286-1416, gnl|Hg17|chr10 (35540185-35541277)
               

               
               286-1416, gnl|Mm7|chr18 (3434060-3432977)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               286-1416, gnl|bosTau2|chr13 (8914044-8915179)
               

               
               286-1416, gnl|Hg17|chr10 (35540185-35541277)
               

               
               286-1416, gnl|Mm7|chr18 (3434060-3432977)

Expressed library(ies): 36 entry(ies)

More info

Expressed library(ies): 36 entry(ies)

Help | Less info


               
               cte (1.17096)
               

               
               cut (0.679694)
               

               
               vin (0.665115)
               

               
               bfe (0.449573)
               

               
               cmu (0.372787)
               

               
               isp (0.300752)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               ssp (0.271039)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               gul (0.177588)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 36 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (1.17096)
               

               
               cut (0.679694)
               

               
               vin (0.665115)
               

               
               bfe (0.449573)
               

               
               cmu (0.372787)
               

               
               isp (0.300752)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               ssp (0.271039)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               gul (0.177588)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	286-1416, gnl\|bosTau2\|chr13 (8914044-8915179)
	286-1416, gnl\|Hg17\|chr10 (35540185-35541277)
	286-1416, gnl\|Mm7\|chr18 (3434060-3432977)

	cte (1.17096)
	cut (0.679694)
	vin (0.665115)
	bfe (0.449573)
	cmu (0.372787)
	isp (0.300752)
	fat (0.294855)
	spl (0.286369)
	ssp (0.271039)
	thg (0.253582)
	mgp (0.230681)
	tes (0.207814)
	aor (0.195274)
	ldo (0.194005)
	gul (0.177588)
	nje (0.16592)
	cje (0.165235)
	eli (0.151814)
	cag (0.151194)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	hlv (0.139256)
	che (0.136314)
	pla (0.133672)
	lyg (0.133103)
	ute (0.132784)
	ova (0.129132)
	bla (0.124347)
	tra (0.123092)
	cly (0.120642)
	clu (0.119646)
	cbl (0.114797)
	jca (0.11396)
	spc (0.113366)
	jej (0.0989218)