Ss1.1-Utr1-UTR010038G06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTCACATGGTGGAGTTGAAGATGGCGGCGGCTCAGGCTGTGGAGGAAATGCGGAGCCGC GTGGTTCTAGGGGAGTTCGGGGTTCGCAATGTTCATACTACCGATTTTCCCGGTAACTAT TCGGGCTATGATGATGCCTGGGACCAGGACCGCTTCGAGAAGAATTTCCGTGTGGATGTG GTACACATGGATGAAAACTCTCTGGAGTTCGACATGGTGGGAATTGACGCAGCCATTGCC AATGCTTTTCGCCGCATCCTCTTAGCTGAGGTGCCAACCATGGCTGTGGAGAAGGTCCTG GTGTACAACAACACGTCCATTGTCCAGGATGAGATCCTCGCTCACCGCTTGGGACTCATC CCCATTCATGCTGATCCCCGTCTTTTTGAGTATCGGAACCCGGGGGATGAAGAAGGCACA GAAATAGATACCCTGCAGTTTCGGCTGCAGGTCAGGTGCACTCGGAACCCCAGTGCTGCA AAAGATTCCTCTGACCCCAATGAGCTCTATGTCAACCACAAAGTGTACACCAGGCACATG ACTTGGGTGCCCCTGGGGAACCAGGCTGATCTCTTCCCGGAGGGCACCATCCGCCCCGTG CACGACGACATCCTCATTGCTCAGCTGCGGCCTGGCCAGGAGATTGACCTGCTCATGCAG TGTGTCAAGGGCATTGGCAAAGATCATGCCAAGTTTTCACCTGTGGCAACAGCCAGCTAC AGGCTTCTGCCAGACATTACCCTGCTTGAGCCTGTGGAAGGGGACGCAGCCGAGGAGCTG AGCCGGTGCTTCTCACCTGGTGTCATCGAGGTGCAGGAAATCCAAGGTAAAAAGGTGGCC AGAGTTGCCAATCCCCGGCTGGATACCTTCAGCAGGGAAGTCTTCCGGAATGACAAGCTG AAGAAGGTCGTGCGGCTCGCTCGCGTTCGGGACCATTATATCTTCTCTGTTGAGTCAACA GGGGTGTTGCCGCCAGATGTGCTGGTGAGCGAAGCCATCAAGGTACTGATGGGGAAGTGC CGGCGGTTCCTGGATGAATTGGACGCAGTTCAGATGGATTGAGGCTTGCACTGGACACGG CGTGGCTGGGAGCAGATGCTCCGAGGCAAGTTGAAGACTAGCATTTGACATGCCCCTGCG GACTGCTGTAGGGAGCCCAGTGAGACTACGGGTCTTGAGTTTCCTGGGGACAATCCCAGC TTTATTTTCAGTCAATACATTTTGTTAAATGTGCCACAAAATGTGACTTTTATGCCTTTG TGAGGCTTTAATGTAAATAAACTTATATCCAAAGAAACCTTCTGTTGGAGAGCACTTTAG TTTTCTTCCAAAAAGATGGGGCCTCACCTCACTGCAGATTTGGCACATTTAGCATTTATG AACACTGGGTTCAGATGTTCCTGCAAGTCAGGGCCAAGGCCCTCTAAAGCCCCTTGAGAA ATGCCAAATTGAGGTGGTTTTGGGGCACACAGCTAGACCACAGAAAAATATCACTTAACC TATTTCCTGGATACTGCAAAACAGCAATTCCCTTTGGACAGTGCCCCCACCCCCACCCCC GGGTTATGCCCAGTGGCGACCAAGGACAACAGATAGAACCTGAGGGCTGCCGATCTGCGG GTCATCAATAGACAGCATTTCTAGCTGGTGTGCTACTTAAGATGGCTTGATGGAGCATGT AACGTCAGTCACAGTTCTTCCTATCCAGTGCCTTTATCAAGATGCTTATGATGATTTGTG ACCCTGGAGTATGTCACTGGTTTGAAAAAGGCAGATGGGGCCCCTTCTGTATGAAATTTG AGATTTTTACTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTCACATGGTGGAGTTGAAGATGGCGGCGGCTCAGGCTGTGGAGGAAATGCGGAGCCGC GTGGTTCTAGGGGAGTTCGGGGTTCGCAATGTTCATACTACCGATTTTCCCGGTAACTAT TCGGGCTATGATGATGCCTGGGACCAGGACCGCTTCGAGAAGAATTTCCGTGTGGATGTG GTACACATGGATGAAAACTCTCTGGAGTTCGACATGGTGGGAATTGACGCAGCCATTGCC AATGCTTTTCGCCGCATCCTCTTAGCTGAGGTGCCAACCATGGCTGTGGAGAAGGTCCTG GTGTACAACAACACGTCCATTGTCCAGGATGAGATCCTCGCTCACCGCTTGGGACTCATC CCCATTCATGCTGATCCCCGTCTTTTTGAGTATCGGAACCCGGGGGATGAAGAAGGCACA GAAATAGATACCCTGCAGTTTCGGCTGCAGGTCAGGTGCACTCGGAACCCCAGTGCTGCA AAAGATTCCTCTGACCCCAATGAGCTCTATGTCAACCACAAAGTGTACACCAGGCACATG ACTTGGGTGCCCCTGGGGAACCAGGCTGATCTCTTCCCGGAGGGCACCATCCGCCCCGTG CACGACGACATCCTCATTGCTCAGCTGCGGCCTGGCCAGGAGATTGACCTGCTCATGCAG TGTGTCAAGGGCATTGGCAAAGATCATGCCAAGTTTTCACCTGTGGCAACAGCCAGCTAC AGGCTTCTGCCAGACATTACCCTGCTTGAGCCTGTGGAAGGGGACGCAGCCGAGGAGCTG AGCCGGTGCTTCTCACCTGGTGTCATCGAGGTGCAGGAAATCCAAGGTAAAAAGGTGGCC AGAGTTGCCAATCCCCGGCTGGATACCTTCAGCAGGGAAGTCTTCCGGAATGACAAGCTG AAGAAGGTCGTGCGGCTCGCTCGCGTTCGGGACCATTATATCTTCTCTGTTGAGTCAACA GGGGTGTTGCCGCCAGATGTGCTGGTGAGCGAAGCCATCAAGGTACTGATGGGGAAGTGC CGGCGGTTCCTGGATGAATTGGACGCAGTTCAGATGGATTGAGGCTTGCACTGGACACGG CGTGGCTGGGAGCAGATGCTCCGAGGCAAGTTGAAGACTAGCATTTGACATGCCCCTGCG GACTGCTGTAGGGAGCCCAGTGAGACTACGGGTCTTGAGTTTCCTGGGGACAATCCCAGC TTTATTTTCAGTCAATACATTTTGTTAAATGTGCCACAAAATGTGACTTTTATGCCTTTG TGAGGCTTTAATGTAAATAAACTTATATCCAAAGAAACCTTCTGTTGGAGAGCACTTTAG TTTTCTTCCAAAAAGATGGGGCCTCACCTCACTGCAGATTTGGCACATTTAGCATTTATG AACACTGGGTTCAGATGTTCCTGCAAGTCAGGGCCAAGGCCCTCTAAAGCCCCTTGAGAA ATGCCAAATTGAGGTGGTTTTGGGGCACACAGCTAGACCACAGAAAAATATCACTTAACC TATTTCCTGGATACTGCAAAACAGCAATTCCCTTTGGACAGTGCCCCCACCCCCACCCCC GGGTTATGCCCAGTGGCGACCAAGGACAACAGATAGAACCTGAGGGCTGCCGATCTGCGG GTCATCAATAGACAGCATTTCTAGCTGGTGTGCTACTTAAGATGGCTTGATGGAGCATGT AACGTCAGTCACAGTTCTTCCTATCCAGTGCCTTTATCAAGATGCTTATGATGATTTGTG ACCCTGGAGTATGTCACTGGTTTGAAAAAGGCAGATGGGGCCCCTTCTGTATGAAATTTG AGATTTTTACTG |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 946-1103, + strand, RNAz p=0.876269 | |
| 1599-1698, - strand, RNAz p=0.80388 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 946-1103, + strand, RNAz p=0.876269 | |
| 1599-1698, - strand, RNAz p=0.80388 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_203290, + |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 269-407, gnl|bosTau2|chr23 (17334658-17334796) | |
| 269-407, gnl|canFam2|chr12 (14983987-14984162) | |
| 269-407, gnl|danRer3|chr13 (28908881-28908717) | |
| 269-407, gnl|echTel1|scaffold_308664 (50453-50624) | |
| 269-407, gnl|fr1|chrUn (190510848-190510695) | |
| 269-407, gnl|galGal2|chr3 (27215795-27215647) | |
| 269-407, gnl|hg17|chr6 (43595405-43595573) | |
| 269-407, gnl|Hg17|chr6 (43595420-43595558) | |
| 269-407, gnl|mm7|chr17 (44375171-44374997) | |
| 269-407, gnl|Mm7|chr17 (44375154-44375016) | |
| 269-407, gnl|monDom2|scaffold_0 (198021575-198021416) | |
| 269-407, gnl|oryCun1|scaffold_94417 (8877-9052) | |
| 269-407, gnl|panTro1|chr5 (44194788-44194956) | |
| 269-407, gnl|rheMac2|chr4 (43420903-43421071) | |
| 269-407, gnl|rn3|chr9 (10297949-10298123) | |
| 269-407, gnl|xenTro1|scaffold_1101 (1930-2094) | |
| 509-677, gnl|bosTau2|chr23 (17335267-17335435) | |
| 509-677, gnl|Hg17|chr6 (43595976-43596144) | |
| 509-677, gnl|Mm7|chr17 (44374369-44374202) | |
| 825-943, gnl|bosTau2|chr23 (17335845-17335963) | |
| 825-943, gnl|Hg17|chr6 (43596646-43596764) | |
| 825-943, gnl|Mm7|chr17 (44373828-44373710) | |
| 946-1454, gnl|bosTau2|chr23 (17336079-17336593) | |
| 946-1454, gnl|Hg17|chr6 (43596900-43597694) | |
| 1556-1812, gnl|bosTau2|chr23 (17336748-17337010) | |
| 1556-1812, gnl|canFam2|chr12 (14986398-14986610) | |
| 1556-1812, gnl|hg17|chr6 (43597769-43597977) | |
| 1556-1812, gnl|Hg17|chr6 (43597814-43598077) | |
| 1556-1812, gnl|loxAfr1|scaffold_7045 (331-557) | |
| 1556-1812, gnl|mm7|chr17 (44373192-44373060) | |
| 1556-1812, gnl|oryCun1|scaffold_94417 (11492-11712) | |
| 1556-1812, gnl|panTro1|chr5 (44197237-44197439) | |
| 1556-1812, gnl|rheMac2|chr4 (43423601-43423807) | |
| 1556-1812, gnl|rn3|chr9 (10299899-10300024) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 269-407, gnl|bosTau2|chr23 (17334658-17334796) | |
| 269-407, gnl|canFam2|chr12 (14983987-14984162) | |
| 269-407, gnl|danRer3|chr13 (28908881-28908717) | |
| 269-407, gnl|echTel1|scaffold_308664 (50453-50624) | |
| 269-407, gnl|fr1|chrUn (190510848-190510695) | |
| 269-407, gnl|galGal2|chr3 (27215795-27215647) | |
| 269-407, gnl|hg17|chr6 (43595405-43595573) | |
| 269-407, gnl|Hg17|chr6 (43595420-43595558) | |
| 269-407, gnl|mm7|chr17 (44375171-44374997) | |
| 269-407, gnl|Mm7|chr17 (44375154-44375016) | |
| 269-407, gnl|monDom2|scaffold_0 (198021575-198021416) | |
| 269-407, gnl|oryCun1|scaffold_94417 (8877-9052) | |
| 269-407, gnl|panTro1|chr5 (44194788-44194956) | |
| 269-407, gnl|rheMac2|chr4 (43420903-43421071) | |
| 269-407, gnl|rn3|chr9 (10297949-10298123) | |
| 269-407, gnl|xenTro1|scaffold_1101 (1930-2094) | |
| 509-677, gnl|bosTau2|chr23 (17335267-17335435) | |
| 509-677, gnl|Hg17|chr6 (43595976-43596144) | |
| 509-677, gnl|Mm7|chr17 (44374369-44374202) | |
| 825-943, gnl|bosTau2|chr23 (17335845-17335963) | |
| 825-943, gnl|Hg17|chr6 (43596646-43596764) | |
| 825-943, gnl|Mm7|chr17 (44373828-44373710) | |
| 946-1454, gnl|bosTau2|chr23 (17336079-17336593) | |
| 946-1454, gnl|Hg17|chr6 (43596900-43597694) | |
| 1556-1812, gnl|bosTau2|chr23 (17336748-17337010) | |
| 1556-1812, gnl|canFam2|chr12 (14986398-14986610) | |
| 1556-1812, gnl|hg17|chr6 (43597769-43597977) | |
| 1556-1812, gnl|Hg17|chr6 (43597814-43598077) | |
| 1556-1812, gnl|loxAfr1|scaffold_7045 (331-557) | |
| 1556-1812, gnl|mm7|chr17 (44373192-44373060) | |
| 1556-1812, gnl|oryCun1|scaffold_94417 (11492-11712) | |
| 1556-1812, gnl|panTro1|chr5 (44197237-44197439) | |
| 1556-1812, gnl|rheMac2|chr4 (43423601-43423807) | |
| 1556-1812, gnl|rn3|chr9 (10299899-10300024) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| cty (0.41632) | |
| fhi (0.339155) | |
| nco (0.323468) | |
| fce (0.271592) | |
| jej (0.197844) | |
| eje (0.197668) | |
| ill (0.175593) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| eli (0.151814) | |
| ski (0.146735) | |
| che (0.136314) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| nbm (0.0993246) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.41632) | |
| fhi (0.339155) | |
| nco (0.323468) | |
| fce (0.271592) | |
| jej (0.197844) | |
| eje (0.197668) | |
| ill (0.175593) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| eli (0.151814) | |
| ski (0.146735) | |
| che (0.136314) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| nbm (0.0993246) |