Ss1.1-Utr1-UTR010038G09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCTGCCGGTCCCCGCGGAAGCGGCGGTGGCGGCGTCATGGCGGAGCTGACGGCTCTGG AGAGTCTCATCGAGATGGGCTTCCCCAGGGGACGCGCCGCTTCCCCCGGGCTTTCTTCTC GTCAGTGTCCGCGGCCGGGCCGCTGCCGGTCCCCGCGGAAGCGGCGGTGGCGGCGTCATG GCGGAGCTGACGGCTCTGGAGAGTCTCATCGAGATGGGCTTCCCCAGGGGACGCGCGGAG AAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGACTGGTTGATGGAG CACGAAGACGACCCCGATGTGGACGAGCCACTAGCGACCCCCCTTGGACATGTCCTGGGA CGGGAACCCACCCCTTCGGAGCAAAGTAGCCCCGAAGGACCTGGGTCTGCTGCCGGAGAA GGCAAACCCCCGCTGAGTGAAGAGGAAAGACAGGAACAGACTAAGAGGATGTTGGAGCTG CTGGCCCAGAAGCAGCGGGAACGTGAAGAGAGAGAGGAGCGGGAGGCCCTGGAACGCGAA CGGCAGCGCAGGAGACAAGGGCAGGAGTTGTCAGCTGCCCGACAGCGGCTCCAGGAGGAT GAGATGCGCCGGGCTGCTGAGGAGCGGCGGAGGGAAAAGGCTGAAGAGTTAGCGGCCAGA CAAAGAGTCCGAGAAAAGATCGAAAGGGACAAAGCAGAGAGAGCCAAGAAGTATGGGGGT AGTGTGGGTTCTCAGCCACCCCCACCTACGACGACAGAGCCAGGTCCTGTTCCCGCCTCT CCCAGCCAGGAGCCTCCCACGAAGCGGGAGTATGACCAGTGTCGCATCCAGGTCAGGCTG CCAGATGGGACTTCCCTGACCCAGACGTTCCGGGCACGGGAACAGCTGGCGGCCGTCAGG CTCTATGTGGAGCTCCACCGTGGGGAGGAGCTAGGAGGGGGCCAGGACCCTGTGCAGTTG CTCAGTGGCTTCCCCCGGCGGGCCTTCTCAGAAGCTGACATGGAGCGGCCTCTGCAGGAG CTGGGACTTGTGCCTTCTGCTGTCCTCATTGTGGCCAAGAAATGTCCCAGCTGAGAGGCC TTTTCCCACCATCCCTCTCTGACTTTTCCATCTTTGATAAAGCACTGACATCTTCCTAAT AAATAGACCCTCTGAGTTCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCTGCCGGTCCCCGCGGAAGCGGCGGTGGCGGCGTCATGGCGGAGCTGACGGCTCTGG AGAGTCTCATCGAGATGGGCTTCCCCAGGGGACGCGCCGCTTCCCCCGGGCTTTCTTCTC GTCAGTGTCCGCGGCCGGGCCGCTGCCGGTCCCCGCGGAAGCGGCGGTGGCGGCGTCATG GCGGAGCTGACGGCTCTGGAGAGTCTCATCGAGATGGGCTTCCCCAGGGGACGCGCGGAG AAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGACTGGTTGATGGAG CACGAAGACGACCCCGATGTGGACGAGCCACTAGCGACCCCCCTTGGACATGTCCTGGGA CGGGAACCCACCCCTTCGGAGCAAAGTAGCCCCGAAGGACCTGGGTCTGCTGCCGGAGAA GGCAAACCCCCGCTGAGTGAAGAGGAAAGACAGGAACAGACTAAGAGGATGTTGGAGCTG CTGGCCCAGAAGCAGCGGGAACGTGAAGAGAGAGAGGAGCGGGAGGCCCTGGAACGCGAA CGGCAGCGCAGGAGACAAGGGCAGGAGTTGTCAGCTGCCCGACAGCGGCTCCAGGAGGAT GAGATGCGCCGGGCTGCTGAGGAGCGGCGGAGGGAAAAGGCTGAAGAGTTAGCGGCCAGA CAAAGAGTCCGAGAAAAGATCGAAAGGGACAAAGCAGAGAGAGCCAAGAAGTATGGGGGT AGTGTGGGTTCTCAGCCACCCCCACCTACGACGACAGAGCCAGGTCCTGTTCCCGCCTCT CCCAGCCAGGAGCCTCCCACGAAGCGGGAGTATGACCAGTGTCGCATCCAGGTCAGGCTG CCAGATGGGACTTCCCTGACCCAGACGTTCCGGGCACGGGAACAGCTGGCGGCCGTCAGG CTCTATGTGGAGCTCCACCGTGGGGAGGAGCTAGGAGGGGGCCAGGACCCTGTGCAGTTG CTCAGTGGCTTCCCCCGGCGGGCCTTCTCAGAAGCTGACATGGAGCGGCCTCTGCAGGAG CTGGGACTTGTGCCTTCTGCTGTCCTCATTGTGGCCAAGAAATGTCCCAGCTGAGAGGCC TTTTCCCACCATCCCTCTCTGACTTTTCCATCTTTGATAAAGCACTGACATCTTCCTAAT AAATAGACCCTCTGAGTTCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 466-584, - strand, RNAz p=0.796108 | |
| 830-1025, + strand, RNAz p=0.759769 | |
| 869-1022, - strand, RNAz p=0.776722 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 466-584, - strand, RNAz p=0.796108 | |
| 830-1025, + strand, RNAz p=0.759769 | |
| 869-1022, - strand, RNAz p=0.776722 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 290-403, gnl|bosTau2|chr29 (32110133-32110020) | |
| 290-403, gnl|Hg17|chr11 (62202650-62202537) | |
| 290-403, gnl|Mm7|chr19 (8552169-8552282) | |
| 466-659, gnl|bosTau2|chr29 (32109634-32109441) | |
| 466-659, gnl|canFam2|chr18 (57005913-57005700) | |
| 466-659, gnl|dasNov1|scaffold_27827 (9534-9747) | |
| 466-659, gnl|echTel1|scaffold_315300 (47268-47482) | |
| 466-659, gnl|fr1|chrUn (28081458-28081653) | |
| 466-659, gnl|hg17|chr11 (62201974-62202187) | |
| 466-659, gnl|Hg17|chr11 (62202168-62201975) | |
| 466-659, gnl|loxAfr1|scaffold_59412 (1416-1203) | |
| 466-659, gnl|mm7|chr19 (8553870-8553659) | |
| 466-659, gnl|Mm7|chr19 (8553674-8553867) | |
| 466-659, gnl|monDom2|scaffold_1145 (12570-12783) | |
| 466-659, gnl|oryCun1|scaffold_210230 (11693-11488) | |
| 466-659, gnl|panTro1|chr9 (63198521-63198734) | |
| 466-659, gnl|rheMac2|chr14 (11408520-11408307) | |
| 466-659, gnl|rn3|chr1 (211701222-211701011) | |
| 466-659, gnl|tetNig1|chr1 (7860758-7860543) | |
| 466-659, gnl|xenTro1|scaffold_1829 (11958-12155) | |
| 830-1025, gnl|bosTau2|chr29 (32108527-32108332) | |
| 830-1025, gnl|canFam2|chr18 (57008245-57008029) | |
| 830-1025, gnl|danRer3|chrUn (170873411-170873606) | |
| 830-1025, gnl|dasNov1|scaffold_27827 (7992-8207) | |
| 830-1025, gnl|echTel1|scaffold_315300 (46179-46397) | |
| 830-1025, gnl|fr1|chrUn (28080747-28080949) | |
| 830-1025, gnl|hg17|chr11 (62200857-62201073) | |
| 830-1025, gnl|Hg17|chr11 (62201055-62200860) | |
| 830-1025, gnl|loxAfr1|scaffold_7523 (35839-35623) | |
| 830-1025, gnl|mm7|chr19 (8555520-8555304) | |
| 830-1025, gnl|Mm7|chr19 (8555320-8555515) | |
| 830-1025, gnl|monDom2|scaffold_1145 (11176-11385) | |
| 830-1025, gnl|oryCun1|scaffold_210230 (13163-12947) | |
| 830-1025, gnl|panTro1|chr9 (63197407-63197623) | |
| 830-1025, gnl|rheMac2|chr14 (11409634-11409418) | |
| 830-1025, gnl|rn3|chr1 (211702893-211702679) | |
| 830-1025, gnl|tetNig1|chr1 (7861473-7861280) | |
| 830-1025, gnl|xenTro1|scaffold_1829 (8271-8465) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 290-403, gnl|bosTau2|chr29 (32110133-32110020) | |
| 290-403, gnl|Hg17|chr11 (62202650-62202537) | |
| 290-403, gnl|Mm7|chr19 (8552169-8552282) | |
| 466-659, gnl|bosTau2|chr29 (32109634-32109441) | |
| 466-659, gnl|canFam2|chr18 (57005913-57005700) | |
| 466-659, gnl|dasNov1|scaffold_27827 (9534-9747) | |
| 466-659, gnl|echTel1|scaffold_315300 (47268-47482) | |
| 466-659, gnl|fr1|chrUn (28081458-28081653) | |
| 466-659, gnl|hg17|chr11 (62201974-62202187) | |
| 466-659, gnl|Hg17|chr11 (62202168-62201975) | |
| 466-659, gnl|loxAfr1|scaffold_59412 (1416-1203) | |
| 466-659, gnl|mm7|chr19 (8553870-8553659) | |
| 466-659, gnl|Mm7|chr19 (8553674-8553867) | |
| 466-659, gnl|monDom2|scaffold_1145 (12570-12783) | |
| 466-659, gnl|oryCun1|scaffold_210230 (11693-11488) | |
| 466-659, gnl|panTro1|chr9 (63198521-63198734) | |
| 466-659, gnl|rheMac2|chr14 (11408520-11408307) | |
| 466-659, gnl|rn3|chr1 (211701222-211701011) | |
| 466-659, gnl|tetNig1|chr1 (7860758-7860543) | |
| 466-659, gnl|xenTro1|scaffold_1829 (11958-12155) | |
| 830-1025, gnl|bosTau2|chr29 (32108527-32108332) | |
| 830-1025, gnl|canFam2|chr18 (57008245-57008029) | |
| 830-1025, gnl|danRer3|chrUn (170873411-170873606) | |
| 830-1025, gnl|dasNov1|scaffold_27827 (7992-8207) | |
| 830-1025, gnl|echTel1|scaffold_315300 (46179-46397) | |
| 830-1025, gnl|fr1|chrUn (28080747-28080949) | |
| 830-1025, gnl|hg17|chr11 (62200857-62201073) | |
| 830-1025, gnl|Hg17|chr11 (62201055-62200860) | |
| 830-1025, gnl|loxAfr1|scaffold_7523 (35839-35623) | |
| 830-1025, gnl|mm7|chr19 (8555520-8555304) | |
| 830-1025, gnl|Mm7|chr19 (8555320-8555515) | |
| 830-1025, gnl|monDom2|scaffold_1145 (11176-11385) | |
| 830-1025, gnl|oryCun1|scaffold_210230 (13163-12947) | |
| 830-1025, gnl|panTro1|chr9 (63197407-63197623) | |
| 830-1025, gnl|rheMac2|chr14 (11409634-11409418) | |
| 830-1025, gnl|rn3|chr1 (211702893-211702679) | |
| 830-1025, gnl|tetNig1|chr1 (7861473-7861280) | |
| 830-1025, gnl|xenTro1|scaffold_1829 (8271-8465) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| elu (0.770713) | |
| hlv (0.696282) | |
| nco (0.646935) | |
| pgl (0.473934) | |
| amn (0.417711) | |
| cty (0.41632) | |
| duo (0.345602) | |
| cag (0.302389) | |
| cga (0.279096) | |
| nca (0.273748) | |
| ute (0.265569) | |
| jej (0.197844) | |
| nep (0.183925) | |
| ill (0.175593) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| eli (0.151814) | |
| pty (0.142714) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ese (0.126502) | |
| jca (0.11396) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.770713) | |
| hlv (0.696282) | |
| nco (0.646935) | |
| pgl (0.473934) | |
| amn (0.417711) | |
| cty (0.41632) | |
| duo (0.345602) | |
| cag (0.302389) | |
| cga (0.279096) | |
| nca (0.273748) | |
| ute (0.265569) | |
| jej (0.197844) | |
| nep (0.183925) | |
| ill (0.175593) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| eli (0.151814) | |
| pty (0.142714) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ese (0.126502) | |
| jca (0.11396) | |
| eje (0.0988338) | |
| ldo (0.0970026) |