Non-Coding RNA Search

Ss1.1-Utr1-UTR010038G12.5

Sequence:


               
               AATCCGGGCCCGCCGGCAGGGATGCGGTAGCGGCGGTTGGAGCGGCCGGGACCCCGGACG
GCCACCATGACCCAGCAGGGCGCGGCGCTGCAGAACTACAACAACGAGCTGGTCAAATGC
ATCGAGGAGCTGTGTCAGAAGCGGGAAGAGTTGTGTCGACAGATCCAGCAGGAGGAGGAT
GAGAAGCAGCGGCTGCAGAATGAAGTGAGGCAGCTGACCGAGAAGCTGGCCCGAGTCAAC
GAGAATCTGGCCCGAAAGATCGCCTCTCGTAACGAGTTTGATCGGACCATCGCGGAGACA
GAGGCCGCCTACCTCAAGATCCTGGAGAGCTCGCAGACTCTGCTTAGCGTTCTGAAGAGG
GAAGCAGGGAACCTGACCAAGGCCACAGCTTCAGAACAGAAGAGCAGTGGAGGCAAGGAT
AGCTGACAAGGCCGCCGGCAGAGGGGCCCGCCTCCACCGCGCCCACCTAGGGCTTCGCCT
CCAGCAAGTCTTCACGGCCTCTTTGTTCTTCACGGCAGCGGCTGCTTTCTCTCCTTGTTC
TGGGTGCCGAGAGGCAGCTGCCAGCCACCACTGGCTCTGGGTGACAAGGAAGGCCTCGCT
GCAGCCCACCAGCTGGGTGTCCTGGCCCTGTGCTCACACAGGTTCTGGGTCGGTCAGTTC
TGCTCGGCCTCTGAGGGCCCCCCCACACCCCTGGGCTGCAGGGAAGACCCCGCTTCTAGT
CTCGGCATCATGTCACCCTCACCTTATCACTTGGCCAGCAGGTGCCCAGGCAAGTGGGAA
GGGGCCAGGGCCCTCCTTCACCTCAGAGCTGACCCTGGGGCCGTAACGTCAATAAAGGTT
GTCTTTGTTAAGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCCGGGCCCGCCGGCAGGGATGCGGTAGCGGCGGTTGGAGCGGCCGGGACCCCGGACG
GCCACCATGACCCAGCAGGGCGCGGCGCTGCAGAACTACAACAACGAGCTGGTCAAATGC
ATCGAGGAGCTGTGTCAGAAGCGGGAAGAGTTGTGTCGACAGATCCAGCAGGAGGAGGAT
GAGAAGCAGCGGCTGCAGAATGAAGTGAGGCAGCTGACCGAGAAGCTGGCCCGAGTCAAC
GAGAATCTGGCCCGAAAGATCGCCTCTCGTAACGAGTTTGATCGGACCATCGCGGAGACA
GAGGCCGCCTACCTCAAGATCCTGGAGAGCTCGCAGACTCTGCTTAGCGTTCTGAAGAGG
GAAGCAGGGAACCTGACCAAGGCCACAGCTTCAGAACAGAAGAGCAGTGGAGGCAAGGAT
AGCTGACAAGGCCGCCGGCAGAGGGGCCCGCCTCCACCGCGCCCACCTAGGGCTTCGCCT
CCAGCAAGTCTTCACGGCCTCTTTGTTCTTCACGGCAGCGGCTGCTTTCTCTCCTTGTTC
TGGGTGCCGAGAGGCAGCTGCCAGCCACCACTGGCTCTGGGTGACAAGGAAGGCCTCGCT
GCAGCCCACCAGCTGGGTGTCCTGGCCCTGTGCTCACACAGGTTCTGGGTCGGTCAGTTC
TGCTCGGCCTCTGAGGGCCCCCCCACACCCCTGGGCTGCAGGGAAGACCCCGCTTCTAGT
CTCGGCATCATGTCACCCTCACCTTATCACTTGGCCAGCAGGTGCCCAGGCAAGTGGGAA
GGGGCCAGGGCCCTCCTTCACCTCAGAGCTGACCCTGGGGCCGTAACGTCAATAAAGGTT
GTCTTTGTTAAGAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12963687|ref|NP_075953.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12963687|ref|NP_075953.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               397-512, - strand, RNAz p=0.844675
               

               
               590-686, - strand, RNAz p=0.849459

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               397-512, - strand, RNAz p=0.844675
               

               
               590-686, - strand, RNAz p=0.849459

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               18-119, gnl|bosTau2|chr11 (85490514-85490416)
               

               
               18-119, gnl|Hg17|chr9 (137358963-137359068)
               

               
               18-119, gnl|Mm7|chr2 (25279708-25279608)
               


               
               317-853, gnl|bosTau2|chr11 (85489580-85489055)
               

               
               317-853, gnl|hg17|chr2 (187601652-187601981)
               

               
               317-853, gnl|Hg17|chr9 (137360094-137360657)
               

               
               317-853, gnl|mm7|chr2 (25278816-25278486)
               

               
               317-853, gnl|Mm7|chr2 (25278894-25278350)
               

               
               317-853, gnl|panTro1|chr13 (77437909-77438238)
               

               
               317-853, gnl|rheMac2|chr12 (50532561-50532848)
               

               
               317-853, gnl|rn3|chr3 (3435542-3435205)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-119, gnl|bosTau2|chr11 (85490514-85490416)
               

               
               18-119, gnl|Hg17|chr9 (137358963-137359068)
               

               
               18-119, gnl|Mm7|chr2 (25279708-25279608)
               


               
               317-853, gnl|bosTau2|chr11 (85489580-85489055)
               

               
               317-853, gnl|hg17|chr2 (187601652-187601981)
               

               
               317-853, gnl|Hg17|chr9 (137360094-137360657)
               

               
               317-853, gnl|mm7|chr2 (25278816-25278486)
               

               
               317-853, gnl|Mm7|chr2 (25278894-25278350)
               

               
               317-853, gnl|panTro1|chr13 (77437909-77438238)
               

               
               317-853, gnl|rheMac2|chr12 (50532561-50532848)
               

               
               317-853, gnl|rn3|chr3 (3435542-3435205)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               med (0.116252)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               med (0.116252)

	397-512, - strand, RNAz p=0.844675
	590-686, - strand, RNAz p=0.849459

	18-119, gnl\|bosTau2\|chr11 (85490514-85490416)
	18-119, gnl\|Hg17\|chr9 (137358963-137359068)
	18-119, gnl\|Mm7\|chr2 (25279708-25279608)

	317-853, gnl\|bosTau2\|chr11 (85489580-85489055)
	317-853, gnl\|hg17\|chr2 (187601652-187601981)
	317-853, gnl\|Hg17\|chr9 (137360094-137360657)
	317-853, gnl\|mm7\|chr2 (25278816-25278486)
	317-853, gnl\|Mm7\|chr2 (25278894-25278350)
	317-853, gnl\|panTro1\|chr13 (77437909-77438238)
	317-853, gnl\|rheMac2\|chr12 (50532561-50532848)
	317-853, gnl\|rn3\|chr3 (3435542-3435205)

	ece (0.229305)
	nms (0.213858)
	fcc (0.197785)
	nep (0.183925)
	ill (0.175593)
	cag (0.151194)
	hyp (0.142837)
	ese (0.126502)
	med (0.116252)