Non-Coding RNA Search

Ss1.1-Utr1-UTR010039D08.5

Sequence:


               
               AGGGCGAGAGCCTGCGGCTGCTGGCCCTCCAGTTTGCCCTGAACACGAGTTCCAGCCGGG
TCTTCCTCCAGGGAGTCCAGCTGAACATGACTCTGCCGGACGCCAGAGACCCCAGCTTTA
GCGCTGCCAACAGCTCGCTGAGGGCGCTGCAGGCCACCGCCGGCAACTCCTACAAGTGCA
GGTCGGAGCAGCGCTTGCAGGTCACAGAGGCCTTTGCCCTGAACGTGTTCCAAGTGCGGG
TCCAGGCGTTCCGCGTGGACGGGGACAAGTTCGGGCCCGCGGAGGAGTGTCAGCTGGACG
AGAACAGCATGCTCATCCCCATCGCCGTGGGCGGCGCCCTGGCGGGCCTGGTCCTCGTCG
TCCTCATGGCCTACCTCGTCGGCAGGAAGAGGAGCCACGCCGGCTACCAGACCATCTAGC
GCCCGCCGCGCCGGCAGCCTCGCTGGGCTTAGGTGGCTGTCAGGGGCACCCTTGTCTCGC
AAACTGGTTTTCACATCTGCTTTTTCCAATGTGAAGTTCATCCGGCAACATTTACTATGC
ACAAGAGTAACTGCGGAAATGACGGTGTTAATTTTGCTAACTGGGTTAAATATTTTGCTA
ACTGGTTAAACGTTAATATTTACCAAAGTAGGACTTGGGGGGGGGGGGCGGTGAGATTGC
TTTTCTAAACTGGCACTGGCTCCGCTGTCATCTGGCTGTGAGGTTCCGGGGTTCGTTCTT
TTCACTCTACCTGGTTTAAGCCTTACGGAGGGAGGGTCTCTGGTCTTGACGCTGTGACCC
GTGGTGGCCGGGAGCGGAGGCTGCCGCGCCGGGGCTGGGGCAGGGGCGGGGGCGGGAGTC
GTGGACAGAACGAGGAGGGGGCGTGTGGGGGGCGCCCGTGAAGCTTCAGCAGCCAGCGTG
CGGCCCTGCGGCTCCCTGTGCTCTGCCACCTGAGAGCTGGCACTTTTTTAAATAGAAAAA
TGGGTGTTATTTTTATTTACTTTTTTGTAAAGTGATTTTGTCTTCTGTTTGAGGTTTGGG
GTGATCCTTTGCACCGTGTACAGTAATTGTTCACTGATTGACGCTTGCAGCTCAGTGGCT
GTGCGCTGAGGGCCCGTCCCTTCCTGGGACGTGTTGCCGTAACGATGCTAATAAATGTCT
CTTCGTTTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGCGAGAGCCTGCGGCTGCTGGCCCTCCAGTTTGCCCTGAACACGAGTTCCAGCCGGG
TCTTCCTCCAGGGAGTCCAGCTGAACATGACTCTGCCGGACGCCAGAGACCCCAGCTTTA
GCGCTGCCAACAGCTCGCTGAGGGCGCTGCAGGCCACCGCCGGCAACTCCTACAAGTGCA
GGTCGGAGCAGCGCTTGCAGGTCACAGAGGCCTTTGCCCTGAACGTGTTCCAAGTGCGGG
TCCAGGCGTTCCGCGTGGACGGGGACAAGTTCGGGCCCGCGGAGGAGTGTCAGCTGGACG
AGAACAGCATGCTCATCCCCATCGCCGTGGGCGGCGCCCTGGCGGGCCTGGTCCTCGTCG
TCCTCATGGCCTACCTCGTCGGCAGGAAGAGGAGCCACGCCGGCTACCAGACCATCTAGC
GCCCGCCGCGCCGGCAGCCTCGCTGGGCTTAGGTGGCTGTCAGGGGCACCCTTGTCTCGC
AAACTGGTTTTCACATCTGCTTTTTCCAATGTGAAGTTCATCCGGCAACATTTACTATGC
ACAAGAGTAACTGCGGAAATGACGGTGTTAATTTTGCTAACTGGGTTAAATATTTTGCTA
ACTGGTTAAACGTTAATATTTACCAAAGTAGGACTTGGGGGGGGGGGGCGGTGAGATTGC
TTTTCTAAACTGGCACTGGCTCCGCTGTCATCTGGCTGTGAGGTTCCGGGGTTCGTTCTT
TTCACTCTACCTGGTTTAAGCCTTACGGAGGGAGGGTCTCTGGTCTTGACGCTGTGACCC
GTGGTGGCCGGGAGCGGAGGCTGCCGCGCCGGGGCTGGGGCAGGGGCGGGGGCGGGAGTC
GTGGACAGAACGAGGAGGGGGCGTGTGGGGGGCGCCCGTGAAGCTTCAGCAGCCAGCGTG
CGGCCCTGCGGCTCCCTGTGCTCTGCCACCTGAGAGCTGGCACTTTTTTAAATAGAAAAA
TGGGTGTTATTTTTATTTACTTTTTTGTAAAGTGATTTTGTCTTCTGTTTGAGGTTTGGG
GTGATCCTTTGCACCGTGTACAGTAATTGTTCACTGATTGACGCTTGCAGCTCAGTGGCT
GTGCGCTGAGGGCCCGTCCCTTCCTGGGACGTGTTGCCGTAACGATGCTAATAAATGTCT
CTTCGTTTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|1675357|gb|AAB19108.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1675357|gb|AAB19108.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               281-759, gnl|bosTau2|chr12 (46739926-46739449)
               

               
               281-759, gnl|Hg17|chr13 (113024599-113025300)
               

               
               281-759, gnl|Mm7|chr8 (13148640-13149124)
               


               
               893-1135, gnl|bosTau2|chr12 (46739334-46739094)
               

               
               893-1135, gnl|Hg17|chr13 (113025469-113025727)
               

               
               893-1135, gnl|Mm7|chr8 (13149270-13149537)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               281-759, gnl|bosTau2|chr12 (46739926-46739449)
               

               
               281-759, gnl|Hg17|chr13 (113024599-113025300)
               

               
               281-759, gnl|Mm7|chr8 (13148640-13149124)
               


               
               893-1135, gnl|bosTau2|chr12 (46739334-46739094)
               

               
               893-1135, gnl|Hg17|chr13 (113025469-113025727)
               

               
               893-1135, gnl|Mm7|chr8 (13149270-13149537)

Expressed library(ies): 36 entry(ies)

More info

Expressed library(ies): 36 entry(ies)

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               nje (0.99552)
               

               
               cli (0.611247)
               

               
               eje (0.593003)
               

               
               hyp (0.571347)
               

               
               fce (0.543183)
               

               
               cov (0.528611)
               

               
               lnt (0.426925)
               

               
               jej (0.395687)
               

               
               elu (0.385356)
               

               
               cly (0.361925)
               

               
               cut (0.339847)
               

               
               csp (0.322373)
               

               
               hlv (0.278513)
               

               
               eep (0.245128)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 36 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.99552)
               

               
               cli (0.611247)
               

               
               eje (0.593003)
               

               
               hyp (0.571347)
               

               
               fce (0.543183)
               

               
               cov (0.528611)
               

               
               lnt (0.426925)
               

               
               jej (0.395687)
               

               
               elu (0.385356)
               

               
               cly (0.361925)
               

               
               cut (0.339847)
               

               
               csp (0.322373)
               

               
               hlv (0.278513)
               

               
               eep (0.245128)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	281-759, gnl\|bosTau2\|chr12 (46739926-46739449)
	281-759, gnl\|Hg17\|chr13 (113024599-113025300)
	281-759, gnl\|Mm7\|chr8 (13148640-13149124)

	893-1135, gnl\|bosTau2\|chr12 (46739334-46739094)
	893-1135, gnl\|Hg17\|chr13 (113025469-113025727)
	893-1135, gnl\|Mm7\|chr8 (13149270-13149537)

	nje (0.99552)
	cli (0.611247)
	eje (0.593003)
	hyp (0.571347)
	fce (0.543183)
	cov (0.528611)
	lnt (0.426925)
	jej (0.395687)
	elu (0.385356)
	cly (0.361925)
	cut (0.339847)
	csp (0.322373)
	hlv (0.278513)
	eep (0.245128)
	nms (0.213858)
	mas (0.210305)
	fcc (0.197785)
	col (0.195008)
	cmu (0.186393)
	nep (0.183925)
	sto (0.179824)
	fbs (0.175346)
	duo (0.172801)
	mcp (0.170648)
	fhi (0.169578)
	cki (0.165235)
	nco (0.161734)
	bfe (0.149858)
	pty (0.142714)
	ute (0.132784)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)
	jca (0.11396)
	spc (0.113366)
	cty (0.10408)