Ss1.1-Utr1-UTR010039G04.5
|
AGCTTTGGGGCTGTCCTCGGACCTGTCCTGGTTCCCGAGTCTCACGATCCTGCAAAGGCC
GCGGAGACACCTCTTTTTGACTAAAGGACTCAGCGTCCAGTGCTCCAGCCGAAGAATCTA
AAGGGACCTCCACTCGTGCCGCCACCATGCCCAACTTCTCTGGCAACTGGAAGATCATCC
GATCGGAAAACTTCGAGGATTTGCTCAAAGTGCTGGGAGTGAACGTGATGCTGAGGAAGA
TTGCTGTGGCTGCGGCATCCAAGCCAGCTGTGGAGATCAAACAGGACGGAGACACTTTCT
ACATCAAAACCTCTACCACCGTGCGTACCACGGAGATCAACTTCAAGATCGGAGAAGAGT
TTGAGGAGCAGACTGTGGACGGGAGACCCTGTAAGAGCCTGGTAAAATGGGAGAGTGAGA
ACAAAATGGTCTGCGAGCAGAGGCTTTTGAAGGGAGAGGGTCCCAAGACCTCCTGGACCA
GAGAATTGACCAATGATGGAGAGCTGATCCTGACCATGACGGCAGATGACATCGTGTGCA
CCAGGGTCTATGTCCGAGAGTGAGTGGCCATGGGTCCAAGAGCCACGCCTGAGCTCACCA
CCAGCCTGAGCTCCTGCCTCACTGTCCCGTGGGCTGCCCCTCCCCGACCCTTCCTTCTAG
ACTAGCTCCCCCCTCACTTCGGTCACTTCTGGGGGTGCTGGGATGCCTTCTGCAGGGGCT
CTGATTTTTTTTTTTTTTTGGCCCCTCCTCTCCTCCCCTACACCAACAAAGTGAGATGGA
TGGCACGAGCCCAGATCACCCATTCCAGAATCACTCGCCCTGCCCCAAGCCTCCATCCCA
GCCCCAAATCACCCCAGAGCACCGTCTCTCTCTTTCACTTGAGGCCTCAGGTGGGAAAGA
CCAGCCCTCTGTCTTCCACTCTTTGTCCCTATAGCCCATGCAGTGTAGAATATTTATTGG
TCAATTTTATTAAAATGTTTTGGAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGCTTTGGGGCTGTCCTCGGACCTGTCCTGGTTCCCGAGTCTCACGATCCTGCAAAGGCC
GCGGAGACACCTCTTTTTGACTAAAGGACTCAGCGTCCAGTGCTCCAGCCGAAGAATCTA
AAGGGACCTCCACTCGTGCCGCCACCATGCCCAACTTCTCTGGCAACTGGAAGATCATCC
GATCGGAAAACTTCGAGGATTTGCTCAAAGTGCTGGGAGTGAACGTGATGCTGAGGAAGA
TTGCTGTGGCTGCGGCATCCAAGCCAGCTGTGGAGATCAAACAGGACGGAGACACTTTCT
ACATCAAAACCTCTACCACCGTGCGTACCACGGAGATCAACTTCAAGATCGGAGAAGAGT
TTGAGGAGCAGACTGTGGACGGGAGACCCTGTAAGAGCCTGGTAAAATGGGAGAGTGAGA
ACAAAATGGTCTGCGAGCAGAGGCTTTTGAAGGGAGAGGGTCCCAAGACCTCCTGGACCA
GAGAATTGACCAATGATGGAGAGCTGATCCTGACCATGACGGCAGATGACATCGTGTGCA
CCAGGGTCTATGTCCGAGAGTGAGTGGCCATGGGTCCAAGAGCCACGCCTGAGCTCACCA
CCAGCCTGAGCTCCTGCCTCACTGTCCCGTGGGCTGCCCCTCCCCGACCCTTCCTTCTAG
ACTAGCTCCCCCCTCACTTCGGTCACTTCTGGGGGTGCTGGGATGCCTTCTGCAGGGGCT
CTGATTTTTTTTTTTTTTTGGCCCCTCCTCTCCTCCCCTACACCAACAAAGTGAGATGGA
TGGCACGAGCCCAGATCACCCATTCCAGAATCACTCGCCCTGCCCCAAGCCTCCATCCCA
GCCCCAAATCACCCCAGAGCACCGTCTCTCTCTTTCACTTGAGGCCTCAGGTGGGAAAGA
CCAGCCCTCTGTCTTCCACTCTTTGTCCCTATAGCCCATGCAGTGTAGAATATTTATTGG
TCAATTTTATTAAAATGTTTTGGAAAAAAAAAAAAA
|
|
gi|56182498|gb|AAV84002.1| |
Protein identifier
|
gi|56182498|gb|AAV84002.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
216-382, gnl|bosTau2|chr21 (1396855-1397021) |
|
216-382, gnl|canFam2|chr7 (44249710-44249849) |
|
216-382, gnl|danRer3|chr25 (5133063-5133196) |
|
216-382, gnl|dasNov1|scaffold_63408 (1055-1194) |
|
216-382, gnl|echTel1|scaffold_181564 (1480-1341) |
|
216-382, gnl|fr1|chrUn (14299411-14299273) |
|
216-382, gnl|galGal2|chr10 (4499141-4499002) |
|
216-382, gnl|hg17|chr15 (76420432-76420571) |
|
216-382, gnl|Hg17|chr15 (76420439-76420605) |
|
216-382, gnl|loxAfr1|scaffold_58986 (27826-27707) |
|
216-382, gnl|mm7|chr9 (54794801-54794940) |
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216-382, gnl|Mm7|chr9 (54794808-54794974) |
|
216-382, gnl|monDom2|scaffold_41 (16847133-16847272) |
|
216-382, gnl|oryCun1|scaffold_168634 (1232-1093) |
|
216-382, gnl|panTro1|chr16 (77077141-77077280) |
|
216-382, gnl|rheMac2|chr7 (57382782-57382921) |
|
216-382, gnl|rn3|chr8 (58337067-58337206) |
|
216-382, gnl|tetNig1|chr13 (8032216-8032355) |
|
216-382, gnl|xenTro1|scaffold_62 (1675094-1675227) |
| |
|
512-991, gnl|bosTau2|chr3 (11045465-11045013) |
|
512-991, gnl|Hg17|chr1 (153482942-153482471) |
|
512-991, gnl|Mm7|chr3 (88066787-88067177) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
216-382, gnl|bosTau2|chr21 (1396855-1397021) |
|
216-382, gnl|canFam2|chr7 (44249710-44249849) |
|
216-382, gnl|danRer3|chr25 (5133063-5133196) |
|
216-382, gnl|dasNov1|scaffold_63408 (1055-1194) |
|
216-382, gnl|echTel1|scaffold_181564 (1480-1341) |
|
216-382, gnl|fr1|chrUn (14299411-14299273) |
|
216-382, gnl|galGal2|chr10 (4499141-4499002) |
|
216-382, gnl|hg17|chr15 (76420432-76420571) |
|
216-382, gnl|Hg17|chr15 (76420439-76420605) |
|
216-382, gnl|loxAfr1|scaffold_58986 (27826-27707) |
|
216-382, gnl|mm7|chr9 (54794801-54794940) |
|
216-382, gnl|Mm7|chr9 (54794808-54794974) |
|
216-382, gnl|monDom2|scaffold_41 (16847133-16847272) |
|
216-382, gnl|oryCun1|scaffold_168634 (1232-1093) |
|
216-382, gnl|panTro1|chr16 (77077141-77077280) |
|
216-382, gnl|rheMac2|chr7 (57382782-57382921) |
|
216-382, gnl|rn3|chr8 (58337067-58337206) |
|
216-382, gnl|tetNig1|chr13 (8032216-8032355) |
|
216-382, gnl|xenTro1|scaffold_62 (1675094-1675227) |
| |
|
512-991, gnl|bosTau2|chr3 (11045465-11045013) |
|
512-991, gnl|Hg17|chr1 (153482942-153482471) |
|
512-991, gnl|Mm7|chr3 (88066787-88067177) |
|
ese (0.506009) |
|
elu (0.385356) |
|
nmm (0.265604) |
|
eep (0.245128) |
|
eru (0.240096) |
|
fcc (0.197785) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
ton (0.1755) |
|
nca (0.136874) |
|
ebs (0.118301) |
|
med (0.116252) |
|
jca (0.11396) |
|
ese (0.506009) |
|
elu (0.385356) |
|
nmm (0.265604) |
|
eep (0.245128) |
|
eru (0.240096) |
|
fcc (0.197785) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
ton (0.1755) |
|
nca (0.136874) |
|
ebs (0.118301) |
|
med (0.116252) |
|
jca (0.11396) |
