Ss1.1-Utr1-UTR010040B10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTCAGGATTGGAACCATGGCGGTGACCAAAGAGCTCTTACAGATGGATCTGTACGCGCT GCTAGGTATCGGGGAGAAGGCGGCGGACAAAGAGGTGAAGAAGGCGTATAGACAGAAGGC CCTCTCCTGCCACCCAGACAAAAATCCGGATAATCCCAGAGCAGCTGAACTCTTCCACCA GCTTTCTCAGGCCTTGGAGGTACTGACCGATGCTGCTGCCAGGGCTGCATATGACAAGGT CAGGAAAGCCAAGAAGCAGGCAGCAGAGAGGACCCAGAAACTTGATGAAAGAAGGAAGAA AGTGAAGCTTGACTTGGAGGCCAGGGAGCTGCAGGCCCAGACCCATGGCAGCGAGGAGGA GGAGGAGAGCCGGAGTGCCAGGACGCTAGAACAAGAGATCGAACGCCTGCGAGAAGAGGG TTCCCGGCAGCTGGAGGAACAGCAGAGGCTGATCCAGGAGCAGATCCGACAGGAACGGGA ACAGAGGTTGAGAGGAATGACAGAAAATCTTGAAAGCAAAGGAACCCCCAAGCTAAAGCT CAAGTGGAAGAGCACAAAGGAGTCCGAGTCCCAAGGTGGCTATTCCAAAGATGTCCTCCT GCGGCTTTTACAAAAGTATGGAGAGGTGCTCAACCTGGTACTTTCCAGTAAGAAGGCAGG CACTGCCGTGGTGGAGTTTGCGACCGTCAGGGCTGCGGAGCTGGCTGTCCAGAATGAAGT GGGCCTGGTCGATAACCCTCTGAAGATTTCCTGGTTGGAGGGACGGCCCCAGAGTTCGAT GGGCCCCAGCCACCCAGGAGCATCCCAGGGCTCAGTGCTATCCGAAAGGGACTACGAGAG CCTCGTCATGATGCGCATGCGCCAGGCCGCTGAGCGGCAGCAGCTGATTGCCCAGATGCA GCAGGAGGAGCAGGCGGGGCAGCCCACCTAGCCTCCTACCCCAAGCCTTCCCACCCTACA GCCCTTTTCTTACACATCACCAATAAACTTTTCTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTCAGGATTGGAACCATGGCGGTGACCAAAGAGCTCTTACAGATGGATCTGTACGCGCT GCTAGGTATCGGGGAGAAGGCGGCGGACAAAGAGGTGAAGAAGGCGTATAGACAGAAGGC CCTCTCCTGCCACCCAGACAAAAATCCGGATAATCCCAGAGCAGCTGAACTCTTCCACCA GCTTTCTCAGGCCTTGGAGGTACTGACCGATGCTGCTGCCAGGGCTGCATATGACAAGGT CAGGAAAGCCAAGAAGCAGGCAGCAGAGAGGACCCAGAAACTTGATGAAAGAAGGAAGAA AGTGAAGCTTGACTTGGAGGCCAGGGAGCTGCAGGCCCAGACCCATGGCAGCGAGGAGGA GGAGGAGAGCCGGAGTGCCAGGACGCTAGAACAAGAGATCGAACGCCTGCGAGAAGAGGG TTCCCGGCAGCTGGAGGAACAGCAGAGGCTGATCCAGGAGCAGATCCGACAGGAACGGGA ACAGAGGTTGAGAGGAATGACAGAAAATCTTGAAAGCAAAGGAACCCCCAAGCTAAAGCT CAAGTGGAAGAGCACAAAGGAGTCCGAGTCCCAAGGTGGCTATTCCAAAGATGTCCTCCT GCGGCTTTTACAAAAGTATGGAGAGGTGCTCAACCTGGTACTTTCCAGTAAGAAGGCAGG CACTGCCGTGGTGGAGTTTGCGACCGTCAGGGCTGCGGAGCTGGCTGTCCAGAATGAAGT GGGCCTGGTCGATAACCCTCTGAAGATTTCCTGGTTGGAGGGACGGCCCCAGAGTTCGAT GGGCCCCAGCCACCCAGGAGCATCCCAGGGCTCAGTGCTATCCGAAAGGGACTACGAGAG CCTCGTCATGATGCGCATGCGCCAGGCCGCTGAGCGGCAGCAGCTGATTGCCCAGATGCA GCAGGAGGAGCAGGCGGGGCAGCCCACCTAGCCTCCTACCCCAAGCCTTCCCACCCTACA GCCCTTTTCTTACACATCACCAATAAACTTTTCTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 204-336, gnl|bosTau2|chr10 (26662137-26662008) | |
| 204-336, gnl|canFam2|chr30 (10903070-10903158) | |
| 204-336, gnl|canFam2|chr30 (10903174-10903072) | |
| 204-336, gnl|echTel1|scaffold_312282 (134159-134259) | |
| 204-336, gnl|echTel1|scaffold_312282 (134291-134169) | |
| 204-336, gnl|Hg17|chr15 (38858819-38858689) | |
| 204-336, gnl|hg17|chr2 (193967560-193967663) | |
| 204-336, gnl|hg17|chr6 (47673050-47673157) | |
| 204-336, gnl|loxAfr1|scaffold_40500 (14415-14514) | |
| 204-336, gnl|loxAfr1|scaffold_40500 (14530-14424) | |
| 204-336, gnl|Mm7|chr2 (118926683-118926522) | |
| 204-336, gnl|mm7|chr9 (63472123-63472223) | |
| 204-336, gnl|mm7|chr9 (63472256-63472133) | |
| 204-336, gnl|oryCun1|scaffold_215414 (79308-79407) | |
| 204-336, gnl|oryCun1|scaffold_215414 (79439-79318) | |
| 204-336, gnl|panTro1|chr13 (83848187-83848282) | |
| 204-336, gnl|panTro1|chr5_random (28979944-28980051) | |
| 204-336, gnl|rheMac2|chr12 (56989270-56989370) | |
| 204-336, gnl|rheMac2|chr4 (47409295-47409402) | |
| 204-336, gnl|rn3|chr6 (103895922-103895822) | |
| 204-336, gnl|rn3|chr6 (104155272-104155149) | |
| 204-336, gnl|tetNig1|chr10 (3905905-3905803) | |
| 804-991, gnl|bosTau2|chr10 (26652591-26652404) | |
| 804-991, gnl|canFam2|chr30 (10893565-10893745) | |
| 804-991, gnl|dasNov1|scaffold_12152 (47139-46960) | |
| 804-991, gnl|echTel1|scaffold_312282 (133499-133680) | |
| 804-991, gnl|Hg17|chr15 (38847558-38847372) | |
| 804-991, gnl|hg17|chr2 (193966838-193967019) | |
| 804-991, gnl|loxAfr1|scaffold_151535 (4772-4590) | |
| 804-991, gnl|Mm7|chr2 (118913539-118913359) | |
| 804-991, gnl|mm7|chr9 (63471465-63471643) | |
| 804-991, gnl|monDom2|scaffold_0 (164884904-164884725) | |
| 804-991, gnl|oryCun1|scaffold_215414 (78427-78584) | |
| 804-991, gnl|panTro1|chr13 (83847404-83847585) | |
| 804-991, gnl|rheMac2|chr12 (56988467-56988648) | |
| 804-991, gnl|rn3|chr6 (103896580-103896404) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 204-336, gnl|bosTau2|chr10 (26662137-26662008) | |
| 204-336, gnl|canFam2|chr30 (10903070-10903158) | |
| 204-336, gnl|canFam2|chr30 (10903174-10903072) | |
| 204-336, gnl|echTel1|scaffold_312282 (134159-134259) | |
| 204-336, gnl|echTel1|scaffold_312282 (134291-134169) | |
| 204-336, gnl|Hg17|chr15 (38858819-38858689) | |
| 204-336, gnl|hg17|chr2 (193967560-193967663) | |
| 204-336, gnl|hg17|chr6 (47673050-47673157) | |
| 204-336, gnl|loxAfr1|scaffold_40500 (14415-14514) | |
| 204-336, gnl|loxAfr1|scaffold_40500 (14530-14424) | |
| 204-336, gnl|Mm7|chr2 (118926683-118926522) | |
| 204-336, gnl|mm7|chr9 (63472123-63472223) | |
| 204-336, gnl|mm7|chr9 (63472256-63472133) | |
| 204-336, gnl|oryCun1|scaffold_215414 (79308-79407) | |
| 204-336, gnl|oryCun1|scaffold_215414 (79439-79318) | |
| 204-336, gnl|panTro1|chr13 (83848187-83848282) | |
| 204-336, gnl|panTro1|chr5_random (28979944-28980051) | |
| 204-336, gnl|rheMac2|chr12 (56989270-56989370) | |
| 204-336, gnl|rheMac2|chr4 (47409295-47409402) | |
| 204-336, gnl|rn3|chr6 (103895922-103895822) | |
| 204-336, gnl|rn3|chr6 (104155272-104155149) | |
| 204-336, gnl|tetNig1|chr10 (3905905-3905803) | |
| 804-991, gnl|bosTau2|chr10 (26652591-26652404) | |
| 804-991, gnl|canFam2|chr30 (10893565-10893745) | |
| 804-991, gnl|dasNov1|scaffold_12152 (47139-46960) | |
| 804-991, gnl|echTel1|scaffold_312282 (133499-133680) | |
| 804-991, gnl|Hg17|chr15 (38847558-38847372) | |
| 804-991, gnl|hg17|chr2 (193966838-193967019) | |
| 804-991, gnl|loxAfr1|scaffold_151535 (4772-4590) | |
| 804-991, gnl|Mm7|chr2 (118913539-118913359) | |
| 804-991, gnl|mm7|chr9 (63471465-63471643) | |
| 804-991, gnl|monDom2|scaffold_0 (164884904-164884725) | |
| 804-991, gnl|oryCun1|scaffold_215414 (78427-78584) | |
| 804-991, gnl|panTro1|chr13 (83847404-83847585) | |
| 804-991, gnl|rheMac2|chr12 (56988467-56988648) | |
| 804-991, gnl|rn3|chr6 (103896580-103896404) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| mgm (0.180343) | |
| nje (0.16592) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eje (0.0988338) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgm (0.180343) | |
| nje (0.16592) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eje (0.0988338) |