Ss1.1-Utr1-UTR010040C01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCAAATTCACCAACGGCCTGGGGACCTGTGGCCTGCTGGCAGCCCTGAAGTCCCTCTTTG CCAAGTATGTGTCTGATTTCACTAGTACTCTCCACTCAATACGAAAGAAGTGCAAGCTGG ATGATATTCCCACCAACTCCCTTTTTCAAGAAGATTGGACGGCTTTTCAGAACTCCATTA GGATAATAGCCACCTGTGGAGAGCTCTTGCGGCAGTGTGGGGACTTTGAGCAACAGCTAG CCAACAGGATTTTGTCCACGGCTGGGAAGTATCTCTCGGATTCCTACAGCCCTCGGAGCC TGACGGGTTTTCAGGATAGCATCTTGACAGACAAGAAGAGCTCTGCCAAGAACCCATGGC AAGAATATAATTATCTCCAGAAGGATAGCCCTGCTGAATATGGCAGTTTAATGGAAATAC TTTATACCCTCAAGGAAAAAGGGTCGAGTAACCACAACCTGCTGTCGGCATCTCGAGCAG CCCTGACTCGGCTTAACCAGCAGGCCCATCAGCTGGCTTTCGATTCCGTCTTCCTGCGCA TCAAACAGCAGCTGCTCCTCATTTCCAAGATGGACAGCTGGAACACAGCCGGCATTGGAG AGACCCTGACCGATGACCTGCCCACCTTCAGTCTCACCCCCCTCGAGTACATCAGCAACA TCGGGCAGTATATCATGTCCCTCCCCCTGAACCTTGAGCCATTCGTCACTCAGGAGGACT CTGCCTTAGAGCTGGCCTTGCACGCCGGAAAGCTGCCGTTTCCTCCCGAGCAAGGGGACG AGTTGCCTGAGCTGGACAACATGGCTGACAACTGGCTGGGCTCCATCGCCAGGGCCACGA TGCAGACCTACTGCGACGCGATCCTCCAGATCCCCGAGCTCACCCCGCACTCCACCAAGC AGCTGGCCACCGACATCGACTACCTGATCAACGTGATGGACGCCCTGGGCCTGCAGCCGT CTCGCAACCTGCAGGGCATTGTGATGCTCTTGAAGACGAAACCCGAGGATTACAGGCAAG TCAGCAAAAGCCTGCCCCGCCGCCTCGCGGCCACCGTGGCTGCCATGCGCGGTGTGGACT ACTGACCCTCTGGCACCTGGCTGAGCAGAGGGTCGGGGCCACCGCCCTCTCCAGAATGGA TGCGCTCCGAAACATCTGTCTGCCTGGGATGAGGCAGGATTTCCTTCAGAAAGACCTGGT TTACTTGTATAATAAAAAAAAAAAAAAAAAAAAAAGGCTTGTAAGGTAGAGGTGTATTAT TAGGAATTTTCAGATGATTTTTTTTAATGATCTGATCTTTAAAAATGCAGGGAATAAATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCAAATTCACCAACGGCCTGGGGACCTGTGGCCTGCTGGCAGCCCTGAAGTCCCTCTTTG CCAAGTATGTGTCTGATTTCACTAGTACTCTCCACTCAATACGAAAGAAGTGCAAGCTGG ATGATATTCCCACCAACTCCCTTTTTCAAGAAGATTGGACGGCTTTTCAGAACTCCATTA GGATAATAGCCACCTGTGGAGAGCTCTTGCGGCAGTGTGGGGACTTTGAGCAACAGCTAG CCAACAGGATTTTGTCCACGGCTGGGAAGTATCTCTCGGATTCCTACAGCCCTCGGAGCC TGACGGGTTTTCAGGATAGCATCTTGACAGACAAGAAGAGCTCTGCCAAGAACCCATGGC AAGAATATAATTATCTCCAGAAGGATAGCCCTGCTGAATATGGCAGTTTAATGGAAATAC TTTATACCCTCAAGGAAAAAGGGTCGAGTAACCACAACCTGCTGTCGGCATCTCGAGCAG CCCTGACTCGGCTTAACCAGCAGGCCCATCAGCTGGCTTTCGATTCCGTCTTCCTGCGCA TCAAACAGCAGCTGCTCCTCATTTCCAAGATGGACAGCTGGAACACAGCCGGCATTGGAG AGACCCTGACCGATGACCTGCCCACCTTCAGTCTCACCCCCCTCGAGTACATCAGCAACA TCGGGCAGTATATCATGTCCCTCCCCCTGAACCTTGAGCCATTCGTCACTCAGGAGGACT CTGCCTTAGAGCTGGCCTTGCACGCCGGAAAGCTGCCGTTTCCTCCCGAGCAAGGGGACG AGTTGCCTGAGCTGGACAACATGGCTGACAACTGGCTGGGCTCCATCGCCAGGGCCACGA TGCAGACCTACTGCGACGCGATCCTCCAGATCCCCGAGCTCACCCCGCACTCCACCAAGC AGCTGGCCACCGACATCGACTACCTGATCAACGTGATGGACGCCCTGGGCCTGCAGCCGT CTCGCAACCTGCAGGGCATTGTGATGCTCTTGAAGACGAAACCCGAGGATTACAGGCAAG TCAGCAAAAGCCTGCCCCGCCGCCTCGCGGCCACCGTGGCTGCCATGCGCGGTGTGGACT ACTGACCCTCTGGCACCTGGCTGAGCAGAGGGTCGGGGCCACCGCCCTCTCCAGAATGGA TGCGCTCCGAAACATCTGTCTGCCTGGGATGAGGCAGGATTTCCTTCAGAAAGACCTGGT TTACTTGTATAATAAAAAAAAAAAAAAAAAAAAAAGGCTTGTAAGGTAGAGGTGTATTAT TAGGAATTTTCAGATGATTTTTTTTAATGATCTGATCTTTAAAAATGCAGGGAATAAATA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 55-182, + strand, RNAz p=0.938402 | |
| 318-435, - strand, RNAz p=0.911672 | |
| 660-778, - strand, RNAz p=0.843068 | |
| 688-778, + strand, RNAz p=0.824904 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 55-182, + strand, RNAz p=0.938402 | |
| 318-435, - strand, RNAz p=0.911672 | |
| 660-778, - strand, RNAz p=0.843068 | |
| 688-778, + strand, RNAz p=0.824904 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 55-182, gnl|bosTau2|chr25 (19258486-19258615) | |
| 55-182, gnl|canFam2|chr6 (25427805-25427620) | |
| 55-182, gnl|danRer3|chrNA (179138255-179138115) | |
| 55-182, gnl|dasNov1|scaffold_7030 (20641-20474) | |
| 55-182, gnl|fr1|chrUn (21703301-21703432) | |
| 55-182, gnl|galGal2|chr14 (8973462-8973321) | |
| 55-182, gnl|hg17|chr16 (23332266-23332432) | |
| 55-182, gnl|Hg17|chr16 (23332402-23332269) | |
| 55-182, gnl|loxAfr1|scaffold_16046 (16989-16817) | |
| 55-182, gnl|mm7|chr7 (117868039-117868180) | |
| 55-182, gnl|Mm7|chr7 (117868171-117868042) | |
| 55-182, gnl|monDom2|scaffold_17 (43649673-43649512) | |
| 55-182, gnl|oryCun1|scaffold_214362 (4249-4087) | |
| 55-182, gnl|panTro1|chr18 (23948815-23948981) | |
| 55-182, gnl|rheMac2|chr20 (21910439-21910605) | |
| 55-182, gnl|rn3|chr1 (180915442-180915580) | |
| 55-182, gnl|xenTro1|scaffold_6 (5230172-5230331) | |
| 244-435, gnl|bosTau2|chr25 (19269343-19269534) | |
| 244-435, gnl|Hg17|chr16 (23325088-23324897) | |
| 244-435, gnl|Mm7|chr7 (117861409-117861218) | |
| 660-778, gnl|bosTau2|chr25 (19281278-19281396) | |
| 660-778, gnl|canFam2|chr6 (25450276-25450133) | |
| 660-778, gnl|danRer3|chrNA (179145355-179145220) | |
| 660-778, gnl|echTel1|scaffold_213833 (7131-7272) | |
| 660-778, gnl|fr1|chrUn (21702199-21702343) | |
| 660-778, gnl|galGal2|chr14 (8978613-8978469) | |
| 660-778, gnl|hg17|chr16 (23312050-23312193) | |
| 660-778, gnl|Hg17|chr16 (23312169-23312051) | |
| 660-778, gnl|loxAfr1|scaffold_6539 (80629-80487) | |
| 660-778, gnl|mm7|chr7 (117853448-117853590) | |
| 660-778, gnl|Mm7|chr7 (117853566-117853448) | |
| 660-778, gnl|monDom2|scaffold_17 (43662965-43662822) | |
| 660-778, gnl|oryCun1|scaffold_149908 (3330-3185) | |
| 660-778, gnl|panTro1|chr18 (23928427-23928570) | |
| 660-778, gnl|rheMac2|chr20 (21889704-21889847) | |
| 660-778, gnl|rn3|chr1 (180900690-180900833) | |
| 660-778, gnl|tetNig1|chr2 (5246596-5246461) | |
| 660-778, gnl|xenTro1|scaffold_6 (5226122-5226263) | |
| 907-1320, gnl|bosTau2|chr25 (19297594-19297198) | |
| 907-1320, gnl|Hg17|chr16 (23307921-23307328) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 55-182, gnl|bosTau2|chr25 (19258486-19258615) | |
| 55-182, gnl|canFam2|chr6 (25427805-25427620) | |
| 55-182, gnl|danRer3|chrNA (179138255-179138115) | |
| 55-182, gnl|dasNov1|scaffold_7030 (20641-20474) | |
| 55-182, gnl|fr1|chrUn (21703301-21703432) | |
| 55-182, gnl|galGal2|chr14 (8973462-8973321) | |
| 55-182, gnl|hg17|chr16 (23332266-23332432) | |
| 55-182, gnl|Hg17|chr16 (23332402-23332269) | |
| 55-182, gnl|loxAfr1|scaffold_16046 (16989-16817) | |
| 55-182, gnl|mm7|chr7 (117868039-117868180) | |
| 55-182, gnl|Mm7|chr7 (117868171-117868042) | |
| 55-182, gnl|monDom2|scaffold_17 (43649673-43649512) | |
| 55-182, gnl|oryCun1|scaffold_214362 (4249-4087) | |
| 55-182, gnl|panTro1|chr18 (23948815-23948981) | |
| 55-182, gnl|rheMac2|chr20 (21910439-21910605) | |
| 55-182, gnl|rn3|chr1 (180915442-180915580) | |
| 55-182, gnl|xenTro1|scaffold_6 (5230172-5230331) | |
| 244-435, gnl|bosTau2|chr25 (19269343-19269534) | |
| 244-435, gnl|Hg17|chr16 (23325088-23324897) | |
| 244-435, gnl|Mm7|chr7 (117861409-117861218) | |
| 660-778, gnl|bosTau2|chr25 (19281278-19281396) | |
| 660-778, gnl|canFam2|chr6 (25450276-25450133) | |
| 660-778, gnl|danRer3|chrNA (179145355-179145220) | |
| 660-778, gnl|echTel1|scaffold_213833 (7131-7272) | |
| 660-778, gnl|fr1|chrUn (21702199-21702343) | |
| 660-778, gnl|galGal2|chr14 (8978613-8978469) | |
| 660-778, gnl|hg17|chr16 (23312050-23312193) | |
| 660-778, gnl|Hg17|chr16 (23312169-23312051) | |
| 660-778, gnl|loxAfr1|scaffold_6539 (80629-80487) | |
| 660-778, gnl|mm7|chr7 (117853448-117853590) | |
| 660-778, gnl|Mm7|chr7 (117853566-117853448) | |
| 660-778, gnl|monDom2|scaffold_17 (43662965-43662822) | |
| 660-778, gnl|oryCun1|scaffold_149908 (3330-3185) | |
| 660-778, gnl|panTro1|chr18 (23928427-23928570) | |
| 660-778, gnl|rheMac2|chr20 (21889704-21889847) | |
| 660-778, gnl|rn3|chr1 (180900690-180900833) | |
| 660-778, gnl|tetNig1|chr2 (5246596-5246461) | |
| 660-778, gnl|xenTro1|scaffold_6 (5226122-5226263) | |
| 907-1320, gnl|bosTau2|chr25 (19297594-19297198) | |
| 907-1320, gnl|Hg17|chr16 (23307921-23307328) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| fce (0.271592) | |
| ece (0.229305) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cag (0.151194) | |
| nca (0.136874) | |
| pla (0.133672) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| ece (0.229305) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cag (0.151194) | |
| nca (0.136874) | |
| pla (0.133672) |