Ss1.1-Utr1-UTR010040D04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCACCGAACATTTCCGGAGATTTGTTGTCTTGGGGGAAGCAGTTGCGTTATCAACGGTC AGAAGACTGCAGCAGGTTGGACATAGGGGACCAGGCTGCAATACTGACTTTCGTAGTAGG TTGGATACCCGCCTACTCCGGCGCCTTCCTAGCGACTCTCACCAGCTCAAAGCCCGCCCA CGACGCGCGCGGAGCGACCACTTCCGCCCTCACCTCTCTCGGTGCAAGATGGCAGAGGAG CCGGAGTCTGCGCTGCAGCTCCCGCCCGCAACTGCTGCTGAGGGCGATGGACCTACGGAG GTCTCCCCAGAAACTGCCACTCCGGAACCCCCTTCTTCCGCTTCAGTTTCCCCCGGAACA GAAGAACCTGCCGGTGACACCAAGAAAAAAATTGACATCCTACTAAAGGCTGTGGGAGAC ACACCTATAATGAAAACAAAGAAATGGGCTGTAGAGCGAACCCGAACCATCCAAGGACTC ATTGACTTCATCAAAAAGTTTCTTAAACTTGTGGCTTCAGAACAGTTGTTTATTTATGTG AATCAGTCCTTTGCCCCCTCTCCAGACCAGGAAGTTGGAACCCTCTATGAGTGTTTTGGC AGTGATGGTAAACTGGTCCTGCATTACTGCAAATCTCAGGCTTGGGGATGAACTACAGAG GAACAGATCTCACTAACTTAAATCTACACAAAGGAAGCAGCTCTGAACAGTTTTGATCTC ATGGCAAGAGACATAGATGTAATCTATTCAGCATGTATCTGCTGTGACCCATGTTTATAC ATTTTTAAAAATCCACAGAGTAGATGAACCTACAAAAATGTCATTTGTGTTACTACACAA ATCATCATAAAAGGTTGACATTAGAGTATACTCATTACTACAGCTATTGCTTCAGAGCTG CCTCCAAGGTATTGAAAAAGGAGACTAAGATTATGTAAAGCTGCTTTTATTACCACTTCT CAAAATGACTGAAATTGTTTACTCATAAAATTAGTATTCCTGCTGATTTTTTTTTCCCTT CACTATAAAAGTCAACTTACTAAAGTTTTCTTTGGGGACTTATTCAGGGAAATTCATTTT ATTTGAGGTATGGGATACGCCTTTTCACATTTACTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCACCGAACATTTCCGGAGATTTGTTGTCTTGGGGGAAGCAGTTGCGTTATCAACGGTC AGAAGACTGCAGCAGGTTGGACATAGGGGACCAGGCTGCAATACTGACTTTCGTAGTAGG TTGGATACCCGCCTACTCCGGCGCCTTCCTAGCGACTCTCACCAGCTCAAAGCCCGCCCA CGACGCGCGCGGAGCGACCACTTCCGCCCTCACCTCTCTCGGTGCAAGATGGCAGAGGAG CCGGAGTCTGCGCTGCAGCTCCCGCCCGCAACTGCTGCTGAGGGCGATGGACCTACGGAG GTCTCCCCAGAAACTGCCACTCCGGAACCCCCTTCTTCCGCTTCAGTTTCCCCCGGAACA GAAGAACCTGCCGGTGACACCAAGAAAAAAATTGACATCCTACTAAAGGCTGTGGGAGAC ACACCTATAATGAAAACAAAGAAATGGGCTGTAGAGCGAACCCGAACCATCCAAGGACTC ATTGACTTCATCAAAAAGTTTCTTAAACTTGTGGCTTCAGAACAGTTGTTTATTTATGTG AATCAGTCCTTTGCCCCCTCTCCAGACCAGGAAGTTGGAACCCTCTATGAGTGTTTTGGC AGTGATGGTAAACTGGTCCTGCATTACTGCAAATCTCAGGCTTGGGGATGAACTACAGAG GAACAGATCTCACTAACTTAAATCTACACAAAGGAAGCAGCTCTGAACAGTTTTGATCTC ATGGCAAGAGACATAGATGTAATCTATTCAGCATGTATCTGCTGTGACCCATGTTTATAC ATTTTTAAAAATCCACAGAGTAGATGAACCTACAAAAATGTCATTTGTGTTACTACACAA ATCATCATAAAAGGTTGACATTAGAGTATACTCATTACTACAGCTATTGCTTCAGAGCTG CCTCCAAGGTATTGAAAAAGGAGACTAAGATTATGTAAAGCTGCTTTTATTACCACTTCT CAAAATGACTGAAATTGTTTACTCATAAAATTAGTATTCCTGCTGATTTTTTTTTCCCTT CACTATAAAAGTCAACTTACTAAAGTTTTCTTTGGGGACTTATTCAGGGAAATTCATTTT ATTTGAGGTATGGGATACGCCTTTTCACATTTACTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 260-391, gnl|bosTau2|chr14 (12618914-12618783) | |
| 260-391, gnl|canFam2|chr11 (8546487-8546647) | |
| 260-391, gnl|dasNov1|scaffold_142779 (3841-3994) | |
| 260-391, gnl|echTel1|scaffold_319814 (13582-13434) | |
| 260-391, gnl|hg17|chr5 (115204987-115205147) | |
| 260-391, gnl|Hg17|chr5 (115205117-115204986) | |
| 260-391, gnl|loxAfr1|scaffold_6444 (74846-75003) | |
| 260-391, gnl|mm7|chr18 (47118870-47119033) | |
| 260-391, gnl|Mm7|chr18 (47119004-47118869) | |
| 260-391, gnl|monDom2|scaffold_55 (11691307-11691150) | |
| 260-391, gnl|oryCun1|scaffold_201590 (19247-19084) | |
| 260-391, gnl|panTro1|chr4 (121374973-121375133) | |
| 260-391, gnl|rheMac2|chr6 (112247263-112247423) | |
| 260-391, gnl|rn3|chr18 (40981332-40981495) | |
| 392-528, gnl|bosTau2|chr14 (12606856-12606720) | |
| 392-528, gnl|canFam2|chr11 (8542595-8542738) | |
| 392-528, gnl|danRer3|chr3 (21549430-21549291) | |
| 392-528, gnl|dasNov1|scaffold_142779 (3705-3840) | |
| 392-528, gnl|echTel1|scaffold_288221 (5234-5091) | |
| 392-528, gnl|fr1|chrUn (163569630-163569487) | |
| 392-528, gnl|hg17|chr5 (115201218-115201361) | |
| 392-528, gnl|Hg17|chr5 (115201360-115201224) | |
| 392-528, gnl|loxAfr1|scaffold_6444 (70454-70597) | |
| 392-528, gnl|mm7|chr18 (47114877-47115020) | |
| 392-528, gnl|Mm7|chr18 (47115019-47114883) | |
| 392-528, gnl|monDom2|scaffold_55 (11694549-11694406) | |
| 392-528, gnl|oryCun1|scaffold_201590 (19384-19248) | |
| 392-528, gnl|panTro1|chr4 (121371184-121371327) | |
| 392-528, gnl|rheMac2|chr6 (112243486-112243629) | |
| 392-528, gnl|rn3|chr18 (40976483-40976626) | |
| 392-528, gnl|tetNig1|chr8 (8236119-8235976) | |
| 392-528, gnl|xenTro1|scaffold_1807 (13361-13462) | |
| 590-1114, gnl|bosTau2|chr14 (12597834-12597334) | |
| 590-1114, gnl|Hg17|chr5 (115195461-115195010) | |
| 590-1114, gnl|Mm7|chr18 (47111999-47111518) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 260-391, gnl|bosTau2|chr14 (12618914-12618783) | |
| 260-391, gnl|canFam2|chr11 (8546487-8546647) | |
| 260-391, gnl|dasNov1|scaffold_142779 (3841-3994) | |
| 260-391, gnl|echTel1|scaffold_319814 (13582-13434) | |
| 260-391, gnl|hg17|chr5 (115204987-115205147) | |
| 260-391, gnl|Hg17|chr5 (115205117-115204986) | |
| 260-391, gnl|loxAfr1|scaffold_6444 (74846-75003) | |
| 260-391, gnl|mm7|chr18 (47118870-47119033) | |
| 260-391, gnl|Mm7|chr18 (47119004-47118869) | |
| 260-391, gnl|monDom2|scaffold_55 (11691307-11691150) | |
| 260-391, gnl|oryCun1|scaffold_201590 (19247-19084) | |
| 260-391, gnl|panTro1|chr4 (121374973-121375133) | |
| 260-391, gnl|rheMac2|chr6 (112247263-112247423) | |
| 260-391, gnl|rn3|chr18 (40981332-40981495) | |
| 392-528, gnl|bosTau2|chr14 (12606856-12606720) | |
| 392-528, gnl|canFam2|chr11 (8542595-8542738) | |
| 392-528, gnl|danRer3|chr3 (21549430-21549291) | |
| 392-528, gnl|dasNov1|scaffold_142779 (3705-3840) | |
| 392-528, gnl|echTel1|scaffold_288221 (5234-5091) | |
| 392-528, gnl|fr1|chrUn (163569630-163569487) | |
| 392-528, gnl|hg17|chr5 (115201218-115201361) | |
| 392-528, gnl|Hg17|chr5 (115201360-115201224) | |
| 392-528, gnl|loxAfr1|scaffold_6444 (70454-70597) | |
| 392-528, gnl|mm7|chr18 (47114877-47115020) | |
| 392-528, gnl|Mm7|chr18 (47115019-47114883) | |
| 392-528, gnl|monDom2|scaffold_55 (11694549-11694406) | |
| 392-528, gnl|oryCun1|scaffold_201590 (19384-19248) | |
| 392-528, gnl|panTro1|chr4 (121371184-121371327) | |
| 392-528, gnl|rheMac2|chr6 (112243486-112243629) | |
| 392-528, gnl|rn3|chr18 (40976483-40976626) | |
| 392-528, gnl|tetNig1|chr8 (8236119-8235976) | |
| 392-528, gnl|xenTro1|scaffold_1807 (13361-13462) | |
| 590-1114, gnl|bosTau2|chr14 (12597834-12597334) | |
| 590-1114, gnl|Hg17|chr5 (115195461-115195010) | |
| 590-1114, gnl|Mm7|chr18 (47111999-47111518) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| ova (0.258264) | |
| col (0.195008) | |
| ill (0.175593) | |
| cut (0.169924) | |
| nco (0.161734) | |
| eli (0.151814) | |
| lun (0.150489) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ret (0.128733) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| jca (0.11396) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ova (0.258264) | |
| col (0.195008) | |
| ill (0.175593) | |
| cut (0.169924) | |
| nco (0.161734) | |
| eli (0.151814) | |
| lun (0.150489) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ret (0.128733) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| jca (0.11396) |