Ss1.1-Utr1-UTR010040F07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTTTTTTTTGCGATTCACACTGGTTTATTGGGGGCCTGGCCA GGCTAGGGACTTTCCGTGCACAAGCAGTAATGCGTGCGGGGCGGGGCTGGGACTGGGGTA GGGCTGGGGCTGGGGTCACTGGCAGGTATTGTAGATCTGGACCTGCAAGTTGATAGCTTG AAGCACGCTGCGCATCCTGGCTTCCAACCCGTCCAGCTGAGCCGCTTTGCCCTCCAGCGC CCGCTCATTCTCTTCATAAGTGCCTTCCAGCTCTTGCAGCCGCTGTAGCTTGTCTTGAGC TGCCTGCAGCAAGTCCCGAGCTTCATCTCGCAATTGCTCCGCCCGCACCTGCGCAGCCAG CACACCCTGGGCCTTGCGCTCAGCCAGGGCCCTCACTGTCTGGTACTGGTCGCCTAGTGG GCCCTGCAACAGCTGTTCAGCCTCCTGAGCTCGACCCTGGGCACTGCCTGCTGTTTCTTC AGCACTAGAGGCTGCCAGGCTATTCCCTGCTCGTTTCAATTTCAGAGCCTCTAGGAGTCC ATCCAGTTGCTGAGCCCGCTCATCTGCAGAACTCAGTGCCCGCTCTGCACCTGACATCCT CTCCTGCACCTGGTTCAGGGTCTGCTCCGTGTCCTGTGTGTCAACCATTGCCTCCTGGAT GGCACCCTGAGCAGCACCCTGTGCCCTCTGGGCCTCCTCCAGTGCCGCCTGTACCGTCTC TGCCTTCTGTTTCTCACCCTCGGCCCGGCTCCGTGCCCGCTGCGCATCCTTCAGTAGCTG CTCCGCTCGACGCACATCTCCCACAGTACGCGCTAGGATCATGTCCACATCTGCCAGGCT CCGGACCCGCTCTGCAATCTCGCCTGCCAGATGCTGGATCTGCTCAGGTGACGCTGGGAT GGAGAGCTCTAGCACTCGTGTGGCCACCATCTCAATGCTATCAGGATCAGCCCCCTCCTG GCTGAGGAAGTCCTTCACACTCTGGATAAGTTCCCGCAGTTCCCGGTTGGCCTGTTCCAC CTGTCCCCTGGAAGCATTAGCCTTGTCCAGGGCTGCCTGGGCCCGCTGCTGTGCCTCGCC TGCCTGCCGACGGGTCTCAGCTACCTGGCTGAGGATGCCACCACCTTCTGCCAGTGCCCG CTGCAGTTCTGCCTGTGTGTGGCGGGCCCGACCCAGCGCCAGGTCCGCCATGGCTGCTGC TCCACTGCAGCTGAGGCCCCCACAGCGAGGCTGCCCATCCTCGTCCCGACAGCCGGCACC CCCACAAGGACTCGTAGCACAGGGTGCATCTCCCGGGGACCCACACACCAGTTCATTTAT GCCTGTCAGGCTCAGGGTGTGGGTACGGGCAGAGAGCTCGCCCAGTGCCTGCTGGTTGGC CATGTGCTTGCGGTTGAAGTCCTCCCTCTGGGCACCCATCAGCACCTCTGTCCGGTGCCG GGTGCCTGCTGAGTGGCTCACAGGGCTGGGCACTGTCAGGGCCGAGGTGTTGGCACGACG TTCTGCCTCTGCAGACAGGCTGTGGGCATGGCGGATGCTGTCATAGGCACCCAGGAAGTT TGAATGCTTGAGCAGGTCCAGATGCTGGTCAAGCTGCCGCAATGTGAGATTAAGTGCAAG CCCATCTCGCTCTAGACTGCTTAGTGCATGGTTGGCATTAAAATTCTCATCCTGTACATC TGTAAGCTTTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTTTTTTTTGCGATTCACACTGGTTTATTGGGGGCCTGGCCA GGCTAGGGACTTTCCGTGCACAAGCAGTAATGCGTGCGGGGCGGGGCTGGGACTGGGGTA GGGCTGGGGCTGGGGTCACTGGCAGGTATTGTAGATCTGGACCTGCAAGTTGATAGCTTG AAGCACGCTGCGCATCCTGGCTTCCAACCCGTCCAGCTGAGCCGCTTTGCCCTCCAGCGC CCGCTCATTCTCTTCATAAGTGCCTTCCAGCTCTTGCAGCCGCTGTAGCTTGTCTTGAGC TGCCTGCAGCAAGTCCCGAGCTTCATCTCGCAATTGCTCCGCCCGCACCTGCGCAGCCAG CACACCCTGGGCCTTGCGCTCAGCCAGGGCCCTCACTGTCTGGTACTGGTCGCCTAGTGG GCCCTGCAACAGCTGTTCAGCCTCCTGAGCTCGACCCTGGGCACTGCCTGCTGTTTCTTC AGCACTAGAGGCTGCCAGGCTATTCCCTGCTCGTTTCAATTTCAGAGCCTCTAGGAGTCC ATCCAGTTGCTGAGCCCGCTCATCTGCAGAACTCAGTGCCCGCTCTGCACCTGACATCCT CTCCTGCACCTGGTTCAGGGTCTGCTCCGTGTCCTGTGTGTCAACCATTGCCTCCTGGAT GGCACCCTGAGCAGCACCCTGTGCCCTCTGGGCCTCCTCCAGTGCCGCCTGTACCGTCTC TGCCTTCTGTTTCTCACCCTCGGCCCGGCTCCGTGCCCGCTGCGCATCCTTCAGTAGCTG CTCCGCTCGACGCACATCTCCCACAGTACGCGCTAGGATCATGTCCACATCTGCCAGGCT CCGGACCCGCTCTGCAATCTCGCCTGCCAGATGCTGGATCTGCTCAGGTGACGCTGGGAT GGAGAGCTCTAGCACTCGTGTGGCCACCATCTCAATGCTATCAGGATCAGCCCCCTCCTG GCTGAGGAAGTCCTTCACACTCTGGATAAGTTCCCGCAGTTCCCGGTTGGCCTGTTCCAC CTGTCCCCTGGAAGCATTAGCCTTGTCCAGGGCTGCCTGGGCCCGCTGCTGTGCCTCGCC TGCCTGCCGACGGGTCTCAGCTACCTGGCTGAGGATGCCACCACCTTCTGCCAGTGCCCG CTGCAGTTCTGCCTGTGTGTGGCGGGCCCGACCCAGCGCCAGGTCCGCCATGGCTGCTGC TCCACTGCAGCTGAGGCCCCCACAGCGAGGCTGCCCATCCTCGTCCCGACAGCCGGCACC CCCACAAGGACTCGTAGCACAGGGTGCATCTCCCGGGGACCCACACACCAGTTCATTTAT GCCTGTCAGGCTCAGGGTGTGGGTACGGGCAGAGAGCTCGCCCAGTGCCTGCTGGTTGGC CATGTGCTTGCGGTTGAAGTCCTCCCTCTGGGCACCCATCAGCACCTCTGTCCGGTGCCG GGTGCCTGCTGAGTGGCTCACAGGGCTGGGCACTGTCAGGGCCGAGGTGTTGGCACGACG TTCTGCCTCTGCAGACAGGCTGTGGGCATGGCGGATGCTGTCATAGGCACCCAGGAAGTT TGAATGCTTGAGCAGGTCCAGATGCTGGTCAAGCTGCCGCAATGTGAGATTAAGTGCAAG CCCATCTCGCTCTAGACTGCTTAGTGCATGGTTGGCATTAAAATTCTCATCCTGTACATC TGTAAGCTTTGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 430-540, + strand, RNAz p=0.835817 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 430-540, + strand, RNAz p=0.835817 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 31-279, gnl|bosTau2|chr22 (40105964-40105712) | |
| 31-279, gnl|Hg17|chr3 (49133556-49133806) | |
| 31-279, gnl|Mm7|chrUn_random (65929-65679) | |
| 430-540, gnl|bosTau2|chr22 (40105389-40105279) | |
| 430-540, gnl|canFam2|chr20 (43061339-43061242) | |
| 430-540, gnl|danRer3|chr23 (22048031-22047934) | |
| 430-540, gnl|dasNov1|scaffold_35614 (4152-4055) | |
| 430-540, gnl|echTel1|scaffold_268031 (4359-4308) | |
| 430-540, gnl|fr1|chrUn (257031643-257031546) | |
| 430-540, gnl|galGal2|chr12 (11554270-11554173) | |
| 430-540, gnl|hg17|chr3 (49134120-49134217) | |
| 430-540, gnl|Hg17|chr3 (49134118-49134226) | |
| 430-540, gnl|loxAfr1|scaffold_593 (162204-162301) | |
| 430-540, gnl|mm7|chrUn_random (65358-65261) | |
| 430-540, gnl|Mm7|chrUn_random (65358-65251) | |
| 430-540, gnl|monDom2|scaffold_5 (76240089-76239992) | |
| 430-540, gnl|oryCun1|scaffold_191309 (2071-1974) | |
| 430-540, gnl|panTro1|chr2 (50656431-50656528) | |
| 430-540, gnl|rheMac2|chr2 (87330407-87330310) | |
| 430-540, gnl|rn3|chr16_random (1230464-1230367) | |
| 430-540, gnl|tetNig1|chrUn_random (51709280-51709183) | |
| 430-540, gnl|xenTro1|scaffold_395 (486572-486669) | |
| 607-752, gnl|bosTau2|chr22 (40089194-40089339) | |
| 607-752, gnl|Hg17|chr3 (49134378-49134523) | |
| 607-752, gnl|Mm7|chrUn_random (64999-64854) | |
| 955-1309, gnl|bosTau2|chr22 (40089972-40090326) | |
| 955-1309, gnl|Hg17|chr3 (49135136-49135490) | |
| 955-1309, gnl|Mm7|chrUn_random (64281-63927) | |
| 1548-1688, gnl|bosTau2|chr22 (40090715-40090855) | |
| 1548-1688, gnl|canFam2|chr20 (43059411-43059216) | |
| 1548-1688, gnl|danRer3|chr23 (22039022-22038829) | |
| 1548-1688, gnl|dasNov1|scaffold_35614 (2416-2221) | |
| 1548-1688, gnl|echTel1|scaffold_268031 (2538-2343) | |
| 1548-1688, gnl|fr1|chrUn (257027297-257027104) | |
| 1548-1688, gnl|galGal2|chr12 (11552725-11552535) | |
| 1548-1688, gnl|hg17|chr3 (49135877-49136072) | |
| 1548-1688, gnl|Hg17|chr3 (49135881-49136021) | |
| 1548-1688, gnl|loxAfr1|scaffold_593 (164025-164220) | |
| 1548-1688, gnl|mm7|chrUn_random (63542-63347) | |
| 1548-1688, gnl|Mm7|chrUn_random (63536-63396) | |
| 1548-1688, gnl|monDom2|scaffold_5 (76233245-76233051) | |
| 1548-1688, gnl|oryCun1|scaffold_191309 (319-124) | |
| 1548-1688, gnl|panTro1|chr2 (50658188-50658383) | |
| 1548-1688, gnl|rheMac2|chr2 (87328657-87328462) | |
| 1548-1688, gnl|rn3|chr16_random (1228648-1228453) | |
| 1548-1688, gnl|tetNig1|chrUn_random (51706095-51705902) | |
| 1548-1688, gnl|xenTro1|scaffold_395 (492831-493026) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 31-279, gnl|bosTau2|chr22 (40105964-40105712) | |
| 31-279, gnl|Hg17|chr3 (49133556-49133806) | |
| 31-279, gnl|Mm7|chrUn_random (65929-65679) | |
| 430-540, gnl|bosTau2|chr22 (40105389-40105279) | |
| 430-540, gnl|canFam2|chr20 (43061339-43061242) | |
| 430-540, gnl|danRer3|chr23 (22048031-22047934) | |
| 430-540, gnl|dasNov1|scaffold_35614 (4152-4055) | |
| 430-540, gnl|echTel1|scaffold_268031 (4359-4308) | |
| 430-540, gnl|fr1|chrUn (257031643-257031546) | |
| 430-540, gnl|galGal2|chr12 (11554270-11554173) | |
| 430-540, gnl|hg17|chr3 (49134120-49134217) | |
| 430-540, gnl|Hg17|chr3 (49134118-49134226) | |
| 430-540, gnl|loxAfr1|scaffold_593 (162204-162301) | |
| 430-540, gnl|mm7|chrUn_random (65358-65261) | |
| 430-540, gnl|Mm7|chrUn_random (65358-65251) | |
| 430-540, gnl|monDom2|scaffold_5 (76240089-76239992) | |
| 430-540, gnl|oryCun1|scaffold_191309 (2071-1974) | |
| 430-540, gnl|panTro1|chr2 (50656431-50656528) | |
| 430-540, gnl|rheMac2|chr2 (87330407-87330310) | |
| 430-540, gnl|rn3|chr16_random (1230464-1230367) | |
| 430-540, gnl|tetNig1|chrUn_random (51709280-51709183) | |
| 430-540, gnl|xenTro1|scaffold_395 (486572-486669) | |
| 607-752, gnl|bosTau2|chr22 (40089194-40089339) | |
| 607-752, gnl|Hg17|chr3 (49134378-49134523) | |
| 607-752, gnl|Mm7|chrUn_random (64999-64854) | |
| 955-1309, gnl|bosTau2|chr22 (40089972-40090326) | |
| 955-1309, gnl|Hg17|chr3 (49135136-49135490) | |
| 955-1309, gnl|Mm7|chrUn_random (64281-63927) | |
| 1548-1688, gnl|bosTau2|chr22 (40090715-40090855) | |
| 1548-1688, gnl|canFam2|chr20 (43059411-43059216) | |
| 1548-1688, gnl|danRer3|chr23 (22039022-22038829) | |
| 1548-1688, gnl|dasNov1|scaffold_35614 (2416-2221) | |
| 1548-1688, gnl|echTel1|scaffold_268031 (2538-2343) | |
| 1548-1688, gnl|fr1|chrUn (257027297-257027104) | |
| 1548-1688, gnl|galGal2|chr12 (11552725-11552535) | |
| 1548-1688, gnl|hg17|chr3 (49135877-49136072) | |
| 1548-1688, gnl|Hg17|chr3 (49135881-49136021) | |
| 1548-1688, gnl|loxAfr1|scaffold_593 (164025-164220) | |
| 1548-1688, gnl|mm7|chrUn_random (63542-63347) | |
| 1548-1688, gnl|Mm7|chrUn_random (63536-63396) | |
| 1548-1688, gnl|monDom2|scaffold_5 (76233245-76233051) | |
| 1548-1688, gnl|oryCun1|scaffold_191309 (319-124) | |
| 1548-1688, gnl|panTro1|chr2 (50658188-50658383) | |
| 1548-1688, gnl|rheMac2|chr2 (87328657-87328462) | |
| 1548-1688, gnl|rn3|chr16_random (1228648-1228453) | |
| 1548-1688, gnl|tetNig1|chrUn_random (51706095-51705902) | |
| 1548-1688, gnl|xenTro1|scaffold_395 (492831-493026) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| che (0.545256) | |
| amn (0.417711) | |
| cov (0.396458) | |
| elu (0.385356) | |
| nep (0.36785) | |
| ton (0.351) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| bla (0.248694) | |
| cly (0.241284) | |
| eru (0.240096) | |
| clu (0.239292) | |
| jca (0.22792) | |
| mas (0.210305) | |
| hea (0.204499) | |
| eje (0.197668) | |
| sto (0.179824) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cag (0.151194) | |
| pty (0.142714) | |
| cst (0.140036) | |
| ute (0.132784) | |
| ret (0.128733) | |
| ebs (0.118301) | |
| ecc (0.115035) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.545256) | |
| amn (0.417711) | |
| cov (0.396458) | |
| elu (0.385356) | |
| nep (0.36785) | |
| ton (0.351) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| bla (0.248694) | |
| cly (0.241284) | |
| eru (0.240096) | |
| clu (0.239292) | |
| jca (0.22792) | |
| mas (0.210305) | |
| hea (0.204499) | |
| eje (0.197668) | |
| sto (0.179824) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cag (0.151194) | |
| pty (0.142714) | |
| cst (0.140036) | |
| ute (0.132784) | |
| ret (0.128733) | |
| ebs (0.118301) | |
| ecc (0.115035) |