Non-Coding RNA Search

Ss1.1-Utr1-UTR010041B11.5

Sequence:


               
               GAGTGGCCGCCTCCGTGTGGGGCCGCGGGGCTGAGGTGGGGAAGTGGGTTTCGGTCTGTT
TGCAGCAGCCGAGGTACCGGATACGAAAGCCCTTCTACAGCGAAGCTAGGCCAAGAGGCT
GGATTAGGAAGGTCACGCGTCCCTTTGTCTGTTTTCCGCAGCGAAGGGGCAGGGCTGCCC
CGGTTCCGCCCCGGAAGCGGAAGTGCGGGCGCCGCGGGGTCCTGTCCAGTGTGAGCGCGG
CCGGTGAGCCAGCCGTTCCTGCCGCTGGTAACACAGTTCGTCTCTCCTACTGCTCGCGTC
CCCTCGCCAGCCGCGCCATGCTGTCTCTAGATTTTCTGGACGATGTGCGGCGGATGAACA
AGCGGCAGCTCTATTATCAAGTCCTAAATTTTGGAATGATTGTCTCCTCGGCACTAATGA
TCTGGAAGGGATTAATGGTCATAACCGGAAGCGAAAGTCCAATTGTAGTGGTGCTCAGTG
GCAGCATGGAACCTGCATTTCATAGAGGTGATCTTCTCTTTCTAACAAATCGAGTTGAAG
ATCCCATACGAGTTGGAGAAATTGTTGTTTTTAGGATAGAAGGAAGAGAGATTCCCATAG
TTCACCGAGTCTTGAAGATTCATGAAAAGCAAAATGGACATATCAAGTTTTTGACCAAAG
GAGATAATAATGCAGTGGATGACAGAGGTCTCTATAAACAAGGACAACACTGGCTAGAGA
AAAAAGATGTTGTGGGCAGAGCTAGGGGATTTGTTCCTTATATTGGGATTGTGACGATCC
TCATGAATGACTATCCTAAATTTAAGTATGCAGTGCTCTTTTTGCTGGGTTTATTTGTGC
TGGTCCATCGTGAGTAAGAAGTCTGCCTTGCTGTTCCTGGAAGATGCTGTACTTGTTGTT
CCTGAATGTTTGGAGTAGATAATTGATCTGCGGCTGGTGGAATGGAGAACACACATGTTG
GCGCTTCTCGGTAGCACTGGTTTGCATTAGTTTATGTTTCCACGCCAGAGTACGTGCGGG
CGGGTGCGTGTGCACCAGGCGTGCACTCAAGGGGACTCTCAATCACAGAATTTCATATGT
TGTCATTGTCACACTTTCACATTTTTGTACATCAGTGAATTTTTTATATTAAAAGGTTGA
GCCAAAGCCCCAGTGTTTGTATTTTGAAGCCAAGCTTCACTTCAAAGTGCCTAACAGAGT
TCTGTAAATGAAAAGGCAGCTCTGCATGAGTCTGCAACTGTCATTCCTCCTTATAATGGG
AGTGGCATATACTGAGGTGGTCGTAGTCTTAACTTTTCAAAATTTTAAATAAAAGACTTT
GCATATCGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTGGCCGCCTCCGTGTGGGGCCGCGGGGCTGAGGTGGGGAAGTGGGTTTCGGTCTGTT
TGCAGCAGCCGAGGTACCGGATACGAAAGCCCTTCTACAGCGAAGCTAGGCCAAGAGGCT
GGATTAGGAAGGTCACGCGTCCCTTTGTCTGTTTTCCGCAGCGAAGGGGCAGGGCTGCCC
CGGTTCCGCCCCGGAAGCGGAAGTGCGGGCGCCGCGGGGTCCTGTCCAGTGTGAGCGCGG
CCGGTGAGCCAGCCGTTCCTGCCGCTGGTAACACAGTTCGTCTCTCCTACTGCTCGCGTC
CCCTCGCCAGCCGCGCCATGCTGTCTCTAGATTTTCTGGACGATGTGCGGCGGATGAACA
AGCGGCAGCTCTATTATCAAGTCCTAAATTTTGGAATGATTGTCTCCTCGGCACTAATGA
TCTGGAAGGGATTAATGGTCATAACCGGAAGCGAAAGTCCAATTGTAGTGGTGCTCAGTG
GCAGCATGGAACCTGCATTTCATAGAGGTGATCTTCTCTTTCTAACAAATCGAGTTGAAG
ATCCCATACGAGTTGGAGAAATTGTTGTTTTTAGGATAGAAGGAAGAGAGATTCCCATAG
TTCACCGAGTCTTGAAGATTCATGAAAAGCAAAATGGACATATCAAGTTTTTGACCAAAG
GAGATAATAATGCAGTGGATGACAGAGGTCTCTATAAACAAGGACAACACTGGCTAGAGA
AAAAAGATGTTGTGGGCAGAGCTAGGGGATTTGTTCCTTATATTGGGATTGTGACGATCC
TCATGAATGACTATCCTAAATTTAAGTATGCAGTGCTCTTTTTGCTGGGTTTATTTGTGC
TGGTCCATCGTGAGTAAGAAGTCTGCCTTGCTGTTCCTGGAAGATGCTGTACTTGTTGTT
CCTGAATGTTTGGAGTAGATAATTGATCTGCGGCTGGTGGAATGGAGAACACACATGTTG
GCGCTTCTCGGTAGCACTGGTTTGCATTAGTTTATGTTTCCACGCCAGAGTACGTGCGGG
CGGGTGCGTGTGCACCAGGCGTGCACTCAAGGGGACTCTCAATCACAGAATTTCATATGT
TGTCATTGTCACACTTTCACATTTTTGTACATCAGTGAATTTTTTATATTAAAAGGTTGA
GCCAAAGCCCCAGTGTTTGTATTTTGAAGCCAAGCTTCACTTCAAAGTGCCTAACAGAGT
TCTGTAAATGAAAAGGCAGCTCTGCATGAGTCTGCAACTGTCATTCCTCCTTATAATGGG
AGTGGCATATACTGAGGTGGTCGTAGTCTTAACTTTTCAAAATTTTAAATAAAAGACTTT
GCATATCGAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5R9C7_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5R9C7_PONPY

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-368, gnl|bosTau2|chr21 (12733445-12733100)
               

               
               1-368, gnl|Hg17|chr15 (83060645-83060260)
               

               
               1-368, gnl|Mm7|chr7 (76819205-76818845)
               


               
               519-811, gnl|bosTau2|chr14 (40958845-40958559)
               

               
               519-811, gnl|Hg17|chr18 (54970788-54976848)
               

               
               519-811, gnl|Mm7|chr18 (66201777-66206536)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-368, gnl|bosTau2|chr21 (12733445-12733100)
               

               
               1-368, gnl|Hg17|chr15 (83060645-83060260)
               

               
               1-368, gnl|Mm7|chr7 (76819205-76818845)
               


               
               519-811, gnl|bosTau2|chr14 (40958845-40958559)
               

               
               519-811, gnl|Hg17|chr18 (54970788-54976848)
               

               
               519-811, gnl|Mm7|chr18 (66201777-66206536)

Expressed library(ies): 48 entry(ies)

More info

Expressed library(ies): 48 entry(ies)

Help | Less info


               
               aor (0.781097)
               

               
               sto (0.719295)
               

               
               thg (0.633955)
               

               
               ski (0.586941)
               

               
               spl (0.572738)
               

               
               pro (0.512033)
               

               
               liv (0.438853)
               

               
               hea (0.408998)
               

               
               che (0.408942)
               

               
               ret (0.3862)
               

               
               nep (0.36785)
               

               
               gul (0.355177)
               

               
               med (0.348756)
               

               
               rec (0.346141)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               csk (0.281492)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 48 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.781097)
               

               
               sto (0.719295)
               

               
               thg (0.633955)
               

               
               ski (0.586941)
               

               
               spl (0.572738)
               

               
               pro (0.512033)
               

               
               liv (0.438853)
               

               
               hea (0.408998)
               

               
               che (0.408942)
               

               
               ret (0.3862)
               

               
               nep (0.36785)
               

               
               gul (0.355177)
               

               
               med (0.348756)
               

               
               rec (0.346141)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               csk (0.281492)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	1-368, gnl\|bosTau2\|chr21 (12733445-12733100)
	1-368, gnl\|Hg17\|chr15 (83060645-83060260)
	1-368, gnl\|Mm7\|chr7 (76819205-76818845)

	519-811, gnl\|bosTau2\|chr14 (40958845-40958559)
	519-811, gnl\|Hg17\|chr18 (54970788-54976848)
	519-811, gnl\|Mm7\|chr18 (66201777-66206536)

	aor (0.781097)
	sto (0.719295)
	thg (0.633955)
	ski (0.586941)
	spl (0.572738)
	pro (0.512033)
	liv (0.438853)
	hea (0.408998)
	che (0.408942)
	ret (0.3862)
	nep (0.36785)
	gul (0.355177)
	med (0.348756)
	rec (0.346141)
	mga (0.32041)
	sme (0.305437)
	lin (0.291206)
	csk (0.281492)
	pla (0.267344)
	lyg (0.266205)
	pgl (0.236967)
	ebs (0.236602)
	nms (0.213858)
	col (0.195008)
	cmu (0.186393)
	fty (0.17584)
	fbs (0.175346)
	sin (0.174948)
	duo (0.172801)
	mcp (0.170648)
	cut (0.169924)
	cki (0.165235)
	nco (0.161734)
	fco (0.157208)
	tbr (0.154178)
	pty (0.142714)
	lnt (0.142308)
	cst (0.140036)
	nca (0.136874)
	nmm (0.132802)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	ecc (0.115035)
	spc (0.113366)
	jej (0.0989218)