Ss1.1-Utr1-UTR010041C01.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
CCCACCTGCCGTCCCTCTTAGCAACCGCCCCGGAGATCTCGCCTGGGCCCTGGCCAGAGG GTCTTCCACGCTCACCCCCTGACCTCCACGCTGCCCAGCTTGCCCCTCCGTTCTGGCTCC TGGCACCATGCCCCACCGCCAACCAACCTTCCCTCCCCCACTTCTGGGGCCGCCCCGGGG TTCCTGCGCTCTGGCCGCTCCTCCTGGGTGTCACTGGCAGCCCCGTGCTTCCTAGAGAAA CTGACACTAAATTCTCCTGAGGCTGGCGGAGGGTCTCGGGACAACACTGGCCCCGCAGCA GGGTGCCAGGAGCACCAACAGTGCCCTGAGCTTGCTTTCTGTCTCCGTCCTTTTCATTCT CAAGTTCCTTTTTATTTCTCCCTTGCGTAACGCCCTTCTTCCCTTCTGCACCCCCACCCT CCCGGTCACCTCCTTGCCACCCCACTCCTGAGCCCACAGCTGTTGGCAGGGTCCCCAGCT CATGCCAGCCTCATCTCCTTCCTTGCCAGCCCCTAAAGGGCCCCTGGGAGACATGGCCCC CATCCGAGAGCCGGCTCGCTCCGTTGCCCTCTGGTTGAGTTGGGGGGCGGCTCTGGGGGC TGTGGCTTGTGCCATGGTTCTGCTGACCCAACAAACAGAGCTGCAAACCCTAAGGAGAGA GGTGACCCGGCTGCAGAGGACCGGAGGGCCCTCCGAGAAGGGGGAAGGGGATCCATGGCA GAACCTCTGGGAGCAGGAACAGAGCCCTGACGGCGCGGAAGCCTGGGAGAACGGGGAGAG ATCCCGGAGAAGGAGAGCCGTGCTCACCCGTAAACAGAAGAAGAAGCGCTCAGTTCTGCA TCTCGTTCCCACTAACATCACCTCCAAGGAGGACTCGGATGTGACAGAACTCATGTGGCA ACCAGCTCTCAAGCGTGGGAGAGGTCTGGAGGCCCAAGGATACTTTGTTCGAGTCTGGGA TGCTGGAGTTTATCTGCTGTACAGCCAGGTCCTGTTTCACGATGTGACTTTCACCATGGG TCAGGTGGTATCTCGGGAGGGCCAGGGAAGGCAGGAGACTCTATTCCGATGTATTCGAAG TATGCCCTCCAACCCCGACTGGGCCTACAATAGCTGCTACAGTGCAGGTGTGTTCCATTT ACACCAAGGGGACATTCTGAGTGTTGTGATCCCCCGGGCCAGGGCGAAACTCAGCCTCTC TCCACATGGAACCTTCCTGGGAGTTGTGAAACTGTGATTGTGTTGTAAAGGTGGTTCTGA GCTTGGAAGACCAGGGTGGGTACATTTCGGAGACAGCCAAGAGCCGAGGAGACAAAGGAC AGGGAACAGGCAGGAGCAGAGGCCTGTTCAGAGTTTGACTGGAACCCCAGGTTTGACAGC TCCTGACTCTCCCTTCCTCCTCCTGCTCCCCTCCCCCCCCCCGGGGGGGGTCTTTAAATT CATGGATATTAAAGAGACAGACTA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
CCCACCTGCCGTCCCTCTTAGCAACCGCCCCGGAGATCTCGCCTGGGCCCTGGCCAGAGG GTCTTCCACGCTCACCCCCTGACCTCCACGCTGCCCAGCTTGCCCCTCCGTTCTGGCTCC TGGCACCATGCCCCACCGCCAACCAACCTTCCCTCCCCCACTTCTGGGGCCGCCCCGGGG TTCCTGCGCTCTGGCCGCTCCTCCTGGGTGTCACTGGCAGCCCCGTGCTTCCTAGAGAAA CTGACACTAAATTCTCCTGAGGCTGGCGGAGGGTCTCGGGACAACACTGGCCCCGCAGCA GGGTGCCAGGAGCACCAACAGTGCCCTGAGCTTGCTTTCTGTCTCCGTCCTTTTCATTCT CAAGTTCCTTTTTATTTCTCCCTTGCGTAACGCCCTTCTTCCCTTCTGCACCCCCACCCT CCCGGTCACCTCCTTGCCACCCCACTCCTGAGCCCACAGCTGTTGGCAGGGTCCCCAGCT CATGCCAGCCTCATCTCCTTCCTTGCCAGCCCCTAAAGGGCCCCTGGGAGACATGGCCCC CATCCGAGAGCCGGCTCGCTCCGTTGCCCTCTGGTTGAGTTGGGGGGCGGCTCTGGGGGC TGTGGCTTGTGCCATGGTTCTGCTGACCCAACAAACAGAGCTGCAAACCCTAAGGAGAGA GGTGACCCGGCTGCAGAGGACCGGAGGGCCCTCCGAGAAGGGGGAAGGGGATCCATGGCA GAACCTCTGGGAGCAGGAACAGAGCCCTGACGGCGCGGAAGCCTGGGAGAACGGGGAGAG ATCCCGGAGAAGGAGAGCCGTGCTCACCCGTAAACAGAAGAAGAAGCGCTCAGTTCTGCA TCTCGTTCCCACTAACATCACCTCCAAGGAGGACTCGGATGTGACAGAACTCATGTGGCA ACCAGCTCTCAAGCGTGGGAGAGGTCTGGAGGCCCAAGGATACTTTGTTCGAGTCTGGGA TGCTGGAGTTTATCTGCTGTACAGCCAGGTCCTGTTTCACGATGTGACTTTCACCATGGG TCAGGTGGTATCTCGGGAGGGCCAGGGAAGGCAGGAGACTCTATTCCGATGTATTCGAAG TATGCCCTCCAACCCCGACTGGGCCTACAATAGCTGCTACAGTGCAGGTGTGTTCCATTT ACACCAAGGGGACATTCTGAGTGTTGTGATCCCCCGGGCCAGGGCGAAACTCAGCCTCTC TCCACATGGAACCTTCCTGGGAGTTGTGAAACTGTGATTGTGTTGTAAAGGTGGTTCTGA GCTTGGAAGACCAGGGTGGGTACATTTCGGAGACAGCCAAGAGCCGAGGAGACAAAGGAC AGGGAACAGGCAGGAGCAGAGGCCTGTTCAGAGTTTGACTGGAACCCCAGGTTTGACAGC TCCTGACTCTCCCTTCCTCCTCCTGCTCCCCTCCCCCCCCCCGGGGGGGGTCTTTAAATT CATGGATATTAAAGAGACAGACTA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 5 entry(ies) | More info |
Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
39-157, - strand, RNAz p=0.635103 | |
419-737, - strand, RNAz p=0.999673 | |
1125-1222, - strand, RNAz p=0.939492 | |
1244-1362, + strand, RNAz p=0.95841 | |
1293-1382, - strand, RNAz p=0.833091 |
Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
39-157, - strand, RNAz p=0.635103 | |
419-737, - strand, RNAz p=0.999673 | |
1125-1222, - strand, RNAz p=0.939492 | |
1244-1362, + strand, RNAz p=0.95841 | |
1293-1382, - strand, RNAz p=0.833091 |
Homologous human UTR: 1 entry(ies) | More info |
Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
3' of NM_172087, + |
Aligned organism(s): 30 entry(ies) | More info |
Aligned organism(s): 30 entry(ies) | Help | Less info |
1-737, gnl|bosTau2|chr19 (13260528-13261286) | |
1-737, gnl|Hg17|chr17 (7402583-7403339) | |
1-737, gnl|Mm7|chr11 (69767308-69766602) | |
842-990, gnl|bosTau2|chr19 (13262016-13262162) | |
842-990, gnl|canFam2|chr5 (35479370-35479618) | |
842-990, gnl|dasNov1|scaffold_17578 (42047-42322) | |
842-990, gnl|echTel1|scaffold_300581 (1199-1424) | |
842-990, gnl|hg17|chr17 (7403925-7404184) | |
842-990, gnl|Hg17|chr17 (7404065-7404210) | |
842-990, gnl|mm7|chr11 (69766070-69765818) | |
842-990, gnl|Mm7|chr11 (69765936-69765790) | |
842-990, gnl|monDom2|scaffold_66 (4602350-4602628) | |
842-990, gnl|oryCun1|scaffold_211000 (428-689) | |
842-990, gnl|panTro1|chr19_random (44345570-44345311) | |
842-990, gnl|rheMac2|chr16 (7285772-7286033) | |
842-990, gnl|rn3|chr10 (56515492-56515241) | |
1125-1464, gnl|bosTau2|chr19 (13262754-13263069) | |
1125-1464, gnl|canFam2|chr5 (35480196-35480556) | |
1125-1464, gnl|dasNov1|scaffold_17578 (42921-43266) | |
1125-1464, gnl|echTel1|scaffold_300581 (2017-2390) | |
1125-1464, gnl|hg17|chr17 (7404741-7405081) | |
1125-1464, gnl|Hg17|chr17 (7404762-7405058) | |
1125-1464, gnl|loxAfr1|scaffold_25257 (23327-23685) | |
1125-1464, gnl|mm7|chr11 (69764944-69764618) | |
1125-1464, gnl|Mm7|chr11 (69764921-69764640) | |
1125-1464, gnl|monDom2|scaffold_66 (4603676-4604019) | |
1125-1464, gnl|oryCun1|scaffold_211000 (1254-1612) | |
1125-1464, gnl|panTro1|chr19_random (44344754-44344414) | |
1125-1464, gnl|rheMac2|chr16 (7286601-7286941) | |
1125-1464, gnl|rn3|chr10 (56514347-56514029) |
Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
1-737, gnl|bosTau2|chr19 (13260528-13261286) | |
1-737, gnl|Hg17|chr17 (7402583-7403339) | |
1-737, gnl|Mm7|chr11 (69767308-69766602) | |
842-990, gnl|bosTau2|chr19 (13262016-13262162) | |
842-990, gnl|canFam2|chr5 (35479370-35479618) | |
842-990, gnl|dasNov1|scaffold_17578 (42047-42322) | |
842-990, gnl|echTel1|scaffold_300581 (1199-1424) | |
842-990, gnl|hg17|chr17 (7403925-7404184) | |
842-990, gnl|Hg17|chr17 (7404065-7404210) | |
842-990, gnl|mm7|chr11 (69766070-69765818) | |
842-990, gnl|Mm7|chr11 (69765936-69765790) | |
842-990, gnl|monDom2|scaffold_66 (4602350-4602628) | |
842-990, gnl|oryCun1|scaffold_211000 (428-689) | |
842-990, gnl|panTro1|chr19_random (44345570-44345311) | |
842-990, gnl|rheMac2|chr16 (7285772-7286033) | |
842-990, gnl|rn3|chr10 (56515492-56515241) | |
1125-1464, gnl|bosTau2|chr19 (13262754-13263069) | |
1125-1464, gnl|canFam2|chr5 (35480196-35480556) | |
1125-1464, gnl|dasNov1|scaffold_17578 (42921-43266) | |
1125-1464, gnl|echTel1|scaffold_300581 (2017-2390) | |
1125-1464, gnl|hg17|chr17 (7404741-7405081) | |
1125-1464, gnl|Hg17|chr17 (7404762-7405058) | |
1125-1464, gnl|loxAfr1|scaffold_25257 (23327-23685) | |
1125-1464, gnl|mm7|chr11 (69764944-69764618) | |
1125-1464, gnl|Mm7|chr11 (69764921-69764640) | |
1125-1464, gnl|monDom2|scaffold_66 (4603676-4604019) | |
1125-1464, gnl|oryCun1|scaffold_211000 (1254-1612) | |
1125-1464, gnl|panTro1|chr19_random (44344754-44344414) | |
1125-1464, gnl|rheMac2|chr16 (7286601-7286941) | |
1125-1464, gnl|rn3|chr10 (56514347-56514029) |
Expressed library(ies): 4 entry(ies) | More info |
Expressed library(ies): 4 entry(ies) | Help | Less info |
ill (0.175593) | |
pla (0.133672) | |
jca (0.11396) | |
cty (0.10408) |
Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
ill (0.175593) | |
pla (0.133672) | |
jca (0.11396) | |
cty (0.10408) |