Non-Coding RNA Search

Ss1.1-Utr1-UTR010041D11.5

Sequence:


               
               TTTTAGAAGATACTCACTTTCATCAGGCTATTCTGCTGCATAGCTGTTAGTTCCATTAAC
TCTGTTTTCAGGGAACTCAGCAGAGTTCTCAGCCTTTGCCCCAGAAATTGAATTAGCATT
TTCCCTTAAAAATTATTGGTCTTGAAATAAATAATTAGAGGCAATGTATGATGGGATGAT
TATTTATGAGTTTAGGGGTGAGGAGTGAGGTAATGACTTTGTTTCCAGATGTGACGCACT
CTGCCATTGCCTTGTGAAGAGTCGGGTGGAGTTCTAAGGAGTTTATTCTCTTTGGGATGC
TTGGGTTCTGGAATCAGACTGCCTGGGACCTTGATGCCATCTTTTCCCAATTGTATGATC
TGGGGGACTTACATAATCTTTCTGTACCTTGCTTACCTCATTTTTAAAACAACTGCCCTT
ATAACAGTACTGCTTGGGGTAGCTTTGAGGGCAACATGATTTAGTTACATGTAAAGCACT
TAAAGTAGTGCCTGCCACAACTGTCAATTTGCAGCAAAAATTTGCTTGCCTGCTCCTCCA
GCTCCTTTTATCTTGCTTGACCAAGGGTCATGCTGGGTTTTCCAGAAGTCCAGGGCCTGG
TTTGAACTTTGGGTAGAAACTGAAATAGCAACTATAACTCTATCCCTAGATAATTTTGTA
GAGTTGAATTGAACTGCGTTTATCACCAGACATTTTTAGGAAGAGGTTTTCTTTTGTACC
TTTTAGGGAAGGATATTATCTGCCTCTGTTAATTAACCAGAGGATATAACAAATGCAGAC
TCTACTCAGTAAATGGACAGTATGAGGCAAGAGGTAAAGGAAGTTTTCACATAAGTAACG
TAAATGAGCTAAAGTCATTAATTTCCAGCAGAGTTGAAAGAACCTTTATTTGTCATCCAG
AAAATAATTTTCAGCTTGCCTACTGCAGAGCGTAACTACCACATGGTTTACTGGGCTGCC
CAAACGTGGCCCAGGACTCGTTTAATTCTAGCATTTCTAAAAATGGGACTCAAAAGTTTT
CCTCTCTAGACTACCATTTTAGGTCAACTTGTCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTAGAAGATACTCACTTTCATCAGGCTATTCTGCTGCATAGCTGTTAGTTCCATTAAC
TCTGTTTTCAGGGAACTCAGCAGAGTTCTCAGCCTTTGCCCCAGAAATTGAATTAGCATT
TTCCCTTAAAAATTATTGGTCTTGAAATAAATAATTAGAGGCAATGTATGATGGGATGAT
TATTTATGAGTTTAGGGGTGAGGAGTGAGGTAATGACTTTGTTTCCAGATGTGACGCACT
CTGCCATTGCCTTGTGAAGAGTCGGGTGGAGTTCTAAGGAGTTTATTCTCTTTGGGATGC
TTGGGTTCTGGAATCAGACTGCCTGGGACCTTGATGCCATCTTTTCCCAATTGTATGATC
TGGGGGACTTACATAATCTTTCTGTACCTTGCTTACCTCATTTTTAAAACAACTGCCCTT
ATAACAGTACTGCTTGGGGTAGCTTTGAGGGCAACATGATTTAGTTACATGTAAAGCACT
TAAAGTAGTGCCTGCCACAACTGTCAATTTGCAGCAAAAATTTGCTTGCCTGCTCCTCCA
GCTCCTTTTATCTTGCTTGACCAAGGGTCATGCTGGGTTTTCCAGAAGTCCAGGGCCTGG
TTTGAACTTTGGGTAGAAACTGAAATAGCAACTATAACTCTATCCCTAGATAATTTTGTA
GAGTTGAATTGAACTGCGTTTATCACCAGACATTTTTAGGAAGAGGTTTTCTTTTGTACC
TTTTAGGGAAGGATATTATCTGCCTCTGTTAATTAACCAGAGGATATAACAAATGCAGAC
TCTACTCAGTAAATGGACAGTATGAGGCAAGAGGTAAAGGAAGTTTTCACATAAGTAACG
TAAATGAGCTAAAGTCATTAATTTCCAGCAGAGTTGAAAGAACCTTTATTTGTCATCCAG
AAAATAATTTTCAGCTTGCCTACTGCAGAGCGTAACTACCACATGGTTTACTGGGCTGCC
CAAACGTGGCCCAGGACTCGTTTAATTCTAGCATTTCTAAAAATGGGACTCAAAAGTTTT
CCTCTCTAGACTACCATTTTAGGTCAACTTGTCTAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               234-352, - strand, RNAz p=0.994714
               

               
               506-625, - strand, RNAz p=0.819748

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               234-352, - strand, RNAz p=0.994714
               

               
               506-625, - strand, RNAz p=0.819748

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-916, gnl|bosTau2|chr9 (52444483-52443576)
               

               
               1-916, gnl|Hg17|chr6 (152244212-152245466)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-916, gnl|bosTau2|chr9 (52444483-52443576)
               

               
               1-916, gnl|Hg17|chr6 (152244212-152245466)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	234-352, - strand, RNAz p=0.994714
	506-625, - strand, RNAz p=0.819748

	1-916, gnl\|bosTau2\|chr9 (52444483-52443576)
	1-916, gnl\|Hg17\|chr6 (152244212-152245466)