Non-Coding RNA Search

Ss1.1-Utr1-UTR010041E04.5

Sequence:


               
               CCTGGCGACAAAATGGCTGCCCGAGGGAGACGGGCGGAGCCTCCGGGCCGGGAGGCGCCG
GGCCCCGCGGGCGGTGGCGGCGGCGGGAGCCGATGGGCTGAGTCGGGGCCCGGGACGTCG
CCCGAGAGCGGGGATGATGAAGTGTCGGGCGCTAGTTCGAGCCCTGTGACGGGCGGCGTG
AACTTGTTCGCCAACGACGGCAGCTTCCTGGAGCTGTTCAAGCGGAAGATGGAGGAGGAG
CAGCGGCAGCGGCAGGAGGAGCCGCCCCCGGGCCCGCAGCGACCCGACCAGCCGGCCACC
GCCGCCGCCGCGGGTCCCGGGGATCCGAAGAGGAAGGGCGGCCCGGGCCCCACGCTCAGC
TTCGTGGGCAAGCGCAGAGGCGGGAACAAACTAGCCCTCAAGACGGGAATAGTAGCCAAG
AAGCAGAAGACGGAGGATGAGGTATTAACAAGTAAAGGTGATGCATGGGCCAAGTACATG
GCAGAGGTGAAAAAGTACAAAGCCCACCAGTGCGGCGATGATGATAAAACTCGGCCCCTG
GTGAAATGACCCCCCTCCCCCGCCTGCCCACAGCCTGGGACTCTCTGCGATGTACATAAC
TATTTAATGCAGCGGCAGCGAGGCAGCCTTTTTCCCCCAAGGACTTATACACAGAAGGAA
ACCGAGATGCTTCCCGCAGCTGCGGACGATTCTCCAGGACTCTTTTTTTACCTTGAGCAC
TTGCCTCCTGAGACTTAATAGAACAGTGGTTTACTGTCCCCTCTCTTCCCTTCTCTTCCT
TCTCTCTGGCCCTTTCTGTCTTCCTCTTCTCCCCCTCCCTTCCCTCCCTTTAGCCGTCAC
TTCTGGGAAGTAAAGAACTTGATTTAGTGCTGGAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGCGACAAAATGGCTGCCCGAGGGAGACGGGCGGAGCCTCCGGGCCGGGAGGCGCCG
GGCCCCGCGGGCGGTGGCGGCGGCGGGAGCCGATGGGCTGAGTCGGGGCCCGGGACGTCG
CCCGAGAGCGGGGATGATGAAGTGTCGGGCGCTAGTTCGAGCCCTGTGACGGGCGGCGTG
AACTTGTTCGCCAACGACGGCAGCTTCCTGGAGCTGTTCAAGCGGAAGATGGAGGAGGAG
CAGCGGCAGCGGCAGGAGGAGCCGCCCCCGGGCCCGCAGCGACCCGACCAGCCGGCCACC
GCCGCCGCCGCGGGTCCCGGGGATCCGAAGAGGAAGGGCGGCCCGGGCCCCACGCTCAGC
TTCGTGGGCAAGCGCAGAGGCGGGAACAAACTAGCCCTCAAGACGGGAATAGTAGCCAAG
AAGCAGAAGACGGAGGATGAGGTATTAACAAGTAAAGGTGATGCATGGGCCAAGTACATG
GCAGAGGTGAAAAAGTACAAAGCCCACCAGTGCGGCGATGATGATAAAACTCGGCCCCTG
GTGAAATGACCCCCCTCCCCCGCCTGCCCACAGCCTGGGACTCTCTGCGATGTACATAAC
TATTTAATGCAGCGGCAGCGAGGCAGCCTTTTTCCCCCAAGGACTTATACACAGAAGGAA
ACCGAGATGCTTCCCGCAGCTGCGGACGATTCTCCAGGACTCTTTTTTTACCTTGAGCAC
TTGCCTCCTGAGACTTAATAGAACAGTGGTTTACTGTCCCCTCTCTTCCCTTCTCTTCCT
TCTCTCTGGCCCTTTCTGTCTTCCTCTTCTCCCCCTCCCTTCCCTCCCTTTAGCCGTCAC
TTCTGGGAAGTAAAGAACTTGATTTAGTGCTGGAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9BQ61_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BQ61_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               74-193, - strand, RNAz p=0.73403

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               74-193, - strand, RNAz p=0.73403

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-384, gnl|bosTau2|chr7 (8438946-8438557)
               

               
               1-384, gnl|Hg17|chr19 (12706483-12706106)
               

               
               1-384, gnl|Mm7|chr8 (83615463-83615831)
               


               
               85-368, gnl|bosTau2|chr1 (93631064-93630789)
               

               
               85-368, gnl|Hg17|chr19 (12706410-12706122)
               

               
               85-368, gnl|Mm7|chr8 (83615528-83615815)
               


               
               405-581, gnl|bosTau2|chr1 (93630421-93630238)
               

               
               405-581, gnl|Hg17|chr19 (12703194-12702743)
               

               
               405-581, gnl|Mm7|chr8 (83618156-83618587)
               


               
               623-883, gnl|bosTau2|chr1 (93630249-93629991)
               

               
               623-883, gnl|Hg17|chr19 (12702754-12702455)
               

               
               623-883, gnl|Mm7|chr8 (83618576-83618861)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-384, gnl|bosTau2|chr7 (8438946-8438557)
               

               
               1-384, gnl|Hg17|chr19 (12706483-12706106)
               

               
               1-384, gnl|Mm7|chr8 (83615463-83615831)
               


               
               85-368, gnl|bosTau2|chr1 (93631064-93630789)
               

               
               85-368, gnl|Hg17|chr19 (12706410-12706122)
               

               
               85-368, gnl|Mm7|chr8 (83615528-83615815)
               


               
               405-581, gnl|bosTau2|chr1 (93630421-93630238)
               

               
               405-581, gnl|Hg17|chr19 (12703194-12702743)
               

               
               405-581, gnl|Mm7|chr8 (83618156-83618587)
               


               
               623-883, gnl|bosTau2|chr1 (93630249-93629991)
               

               
               623-883, gnl|Hg17|chr19 (12702754-12702455)
               

               
               623-883, gnl|Mm7|chr8 (83618576-83618861)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               ecc (0.345105)
               

               
               nco (0.323468)
               

               
               cli (0.305623)
               

               
               cag (0.302389)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               cki (0.165235)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.345105)
               

               
               nco (0.323468)
               

               
               cli (0.305623)
               

               
               cag (0.302389)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               cki (0.165235)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)

	1-384, gnl\|bosTau2\|chr7 (8438946-8438557)
	1-384, gnl\|Hg17\|chr19 (12706483-12706106)
	1-384, gnl\|Mm7\|chr8 (83615463-83615831)

	85-368, gnl\|bosTau2\|chr1 (93631064-93630789)
	85-368, gnl\|Hg17\|chr19 (12706410-12706122)
	85-368, gnl\|Mm7\|chr8 (83615528-83615815)

	405-581, gnl\|bosTau2\|chr1 (93630421-93630238)
	405-581, gnl\|Hg17\|chr19 (12703194-12702743)
	405-581, gnl\|Mm7\|chr8 (83618156-83618587)

	623-883, gnl\|bosTau2\|chr1 (93630249-93629991)
	623-883, gnl\|Hg17\|chr19 (12702754-12702455)
	623-883, gnl\|Mm7\|chr8 (83618576-83618861)

	ecc (0.345105)
	nco (0.323468)
	cli (0.305623)
	cag (0.302389)
	fce (0.271592)
	nmm (0.265604)
	cly (0.241284)
	eru (0.240096)
	med (0.232504)
	ece (0.229305)
	nbm (0.198649)
	fcc (0.197785)
	eje (0.197668)
	col (0.195008)
	cki (0.165235)
	pty (0.142714)
	lnt (0.142308)
	cst (0.140036)
	cov (0.132153)
	ese (0.126502)
	bla (0.124347)
	eep (0.122564)
	jej (0.0989218)