Non-Coding RNA Search

Ss1.1-Utr1-UTR010041E08.5

Sequence:


               
               CAAAAACAGGATCATTCACTGTGACCTGAAGCCTGAGAACATTTTATTGAAGCAGCAGGG
TAGAAGTGGGATTAAAGTGATTGATTTCGGCTCCAGTTGTTACGAGCATCAGCGGGTCTA
CACGTACATCCAGTCCCGTTTTTACCGGGCCCCGGAAGTGATCCTGGGCGCCAGGTACGG
CATGCCCATTGACATGTGGAGCCTGGGCTGCATCCTCGCGGAGCTCCTCACTGGTTACCC
CCTCTTGCCTGGGGAGGACGAAGGGGACCAGCTGGCCTGTATGATTGAACTGCTGGGCAT
GCCCTCCCAGAAACTGCTGGATGCCTCCAAACGAGCCAAAAATTTTGTGAGCTCCAAGGG
TTATCCCCGTTACTGCACTGTCACGACTCTCTCGGACGGCTCCGTGGTTCTCAACGGAGG
CCGTTCCCGGAGGGGGAAACTGCGGGGCCCACCAGAGAGCAGAGAGTGGGGGAATGCACT
GAAGGGGTGTGACGACCCCCTTTTCCTTGACTTCTTAAAACAGTGTTTAGAGTGGGATCC
TGCGGTTCGCATGACCCCTGGCCAGGCTTTGCGGCACCCTTGGCTGAGGAGGCGGCTGCC
AAAGCCTCCGACGGGGGAGAAGACGTCAGTGAAAAGGATCACCGAGAGCACTGGTGCTAT
CACATCCATTTCCAAGTTACCTCCACCTTCCAGCTCAGCTTCCAAACTGAGGACTAATTT
GGCACAGATGACAGATGCCAACGGGAATATTCAGCAGAGGACAGTGTTGCCAAAACTTGT
TAGCTGAGCTGAGTCCCGTCCCCCCCACCCCCGCCCATTGCTGGTAATTCTGAAAGATAC
GACATTGCTGAGCCTTACTGGGTTGAAAAGGAGTAGCTCAGACCTGTTTTTATTTGCTCA
ATAACTCGACTCATTTGTATCTTTTCAGCACTTATTTTAATGTAAGAAACATGTTTGTTT
TGTTTTTATAAAATACATGGGGACAATGCTTTAAGTTTTTATACTTTCTGGAGCTGTTTT
TGTGTTCTAAAAGTACGATGAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAAACAGGATCATTCACTGTGACCTGAAGCCTGAGAACATTTTATTGAAGCAGCAGGG
TAGAAGTGGGATTAAAGTGATTGATTTCGGCTCCAGTTGTTACGAGCATCAGCGGGTCTA
CACGTACATCCAGTCCCGTTTTTACCGGGCCCCGGAAGTGATCCTGGGCGCCAGGTACGG
CATGCCCATTGACATGTGGAGCCTGGGCTGCATCCTCGCGGAGCTCCTCACTGGTTACCC
CCTCTTGCCTGGGGAGGACGAAGGGGACCAGCTGGCCTGTATGATTGAACTGCTGGGCAT
GCCCTCCCAGAAACTGCTGGATGCCTCCAAACGAGCCAAAAATTTTGTGAGCTCCAAGGG
TTATCCCCGTTACTGCACTGTCACGACTCTCTCGGACGGCTCCGTGGTTCTCAACGGAGG
CCGTTCCCGGAGGGGGAAACTGCGGGGCCCACCAGAGAGCAGAGAGTGGGGGAATGCACT
GAAGGGGTGTGACGACCCCCTTTTCCTTGACTTCTTAAAACAGTGTTTAGAGTGGGATCC
TGCGGTTCGCATGACCCCTGGCCAGGCTTTGCGGCACCCTTGGCTGAGGAGGCGGCTGCC
AAAGCCTCCGACGGGGGAGAAGACGTCAGTGAAAAGGATCACCGAGAGCACTGGTGCTAT
CACATCCATTTCCAAGTTACCTCCACCTTCCAGCTCAGCTTCCAAACTGAGGACTAATTT
GGCACAGATGACAGATGCCAACGGGAATATTCAGCAGAGGACAGTGTTGCCAAAACTTGT
TAGCTGAGCTGAGTCCCGTCCCCCCCACCCCCGCCCATTGCTGGTAATTCTGAAAGATAC
GACATTGCTGAGCCTTACTGGGTTGAAAAGGAGTAGCTCAGACCTGTTTTTATTTGCTCA
ATAACTCGACTCATTTGTATCTTTTCAGCACTTATTTTAATGTAAGAAACATGTTTGTTT
TGTTTTTATAAAATACATGGGGACAATGCTTTAAGTTTTTATACTTTCTGGAGCTGTTTT
TGTGTTCTAAAAGTACGATGAGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1666066|emb|CAA70418.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1666066|emb|CAA70418.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               200-319, - strand, RNAz p=0.626454

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-319, - strand, RNAz p=0.626454

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-637, gnl|bosTau2|chr16 (3173199-3173835)
               

               
               1-637, gnl|canFam2|chr7 (8780294-8781275)
               

               
               1-637, gnl|danRer3|chr11 (23216574-23215593)
               

               
               1-637, gnl|dasNov1|scaffold_2503 (49512-50493)
               

               
               1-637, gnl|echTel1|scaffold_318240 (54178-53213)
               

               
               1-637, gnl|fr1|chrUn (3757942-3759100)
               

               
               1-637, gnl|galGal2|chr26 (1101927-1102908)
               

               
               1-637, gnl|hg17|chr1 (203209357-203210338)
               

               
               1-637, gnl|Hg17|chr1 (203209919-203210558)
               

               
               1-637, gnl|loxAfr1|scaffold_22432 (7782-8763)
               

               
               1-637, gnl|mm7|chr1 (131034140-131033159)
               

               
               1-637, gnl|Mm7|chr1 (131033576-131032940)
               

               
               1-637, gnl|monDom2|scaffold_13 (8698085-8699066)
               

               
               1-637, gnl|oryCun1|scaffold_196052 (44153-43173)
               

               
               1-637, gnl|panTro1|chr1_random (41412429-41413410)
               

               
               1-637, gnl|rheMac2|chr1 (163717100-163716119)
               

               
               1-637, gnl|rn3|chr13 (44093590-44092609)
               

               
               1-637, gnl|tetNig1|chr11 (8897518-8898675)
               

               
               1-637, gnl|xenTro1|scaffold_736 (367910-366929)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-637, gnl|bosTau2|chr16 (3173199-3173835)
               

               
               1-637, gnl|canFam2|chr7 (8780294-8781275)
               

               
               1-637, gnl|danRer3|chr11 (23216574-23215593)
               

               
               1-637, gnl|dasNov1|scaffold_2503 (49512-50493)
               

               
               1-637, gnl|echTel1|scaffold_318240 (54178-53213)
               

               
               1-637, gnl|fr1|chrUn (3757942-3759100)
               

               
               1-637, gnl|galGal2|chr26 (1101927-1102908)
               

               
               1-637, gnl|hg17|chr1 (203209357-203210338)
               

               
               1-637, gnl|Hg17|chr1 (203209919-203210558)
               

               
               1-637, gnl|loxAfr1|scaffold_22432 (7782-8763)
               

               
               1-637, gnl|mm7|chr1 (131034140-131033159)
               

               
               1-637, gnl|Mm7|chr1 (131033576-131032940)
               

               
               1-637, gnl|monDom2|scaffold_13 (8698085-8699066)
               

               
               1-637, gnl|oryCun1|scaffold_196052 (44153-43173)
               

               
               1-637, gnl|panTro1|chr1_random (41412429-41413410)
               

               
               1-637, gnl|rheMac2|chr1 (163717100-163716119)
               

               
               1-637, gnl|rn3|chr13 (44093590-44092609)
               

               
               1-637, gnl|tetNig1|chr11 (8897518-8898675)
               

               
               1-637, gnl|xenTro1|scaffold_736 (367910-366929)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               col (0.585023)
               

               
               ldo (0.194005)
               

               
               nmm (0.132802)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.585023)
               

               
               ldo (0.194005)
               

               
               nmm (0.132802)
               

               
               jca (0.11396)

	1-637, gnl\|bosTau2\|chr16 (3173199-3173835)
	1-637, gnl\|canFam2\|chr7 (8780294-8781275)
	1-637, gnl\|danRer3\|chr11 (23216574-23215593)
	1-637, gnl\|dasNov1\|scaffold_2503 (49512-50493)
	1-637, gnl\|echTel1\|scaffold_318240 (54178-53213)
	1-637, gnl\|fr1\|chrUn (3757942-3759100)
	1-637, gnl\|galGal2\|chr26 (1101927-1102908)
	1-637, gnl\|hg17\|chr1 (203209357-203210338)
	1-637, gnl\|Hg17\|chr1 (203209919-203210558)
	1-637, gnl\|loxAfr1\|scaffold_22432 (7782-8763)
	1-637, gnl\|mm7\|chr1 (131034140-131033159)
	1-637, gnl\|Mm7\|chr1 (131033576-131032940)
	1-637, gnl\|monDom2\|scaffold_13 (8698085-8699066)
	1-637, gnl\|oryCun1\|scaffold_196052 (44153-43173)
	1-637, gnl\|panTro1\|chr1_random (41412429-41413410)
	1-637, gnl\|rheMac2\|chr1 (163717100-163716119)
	1-637, gnl\|rn3\|chr13 (44093590-44092609)
	1-637, gnl\|tetNig1\|chr11 (8897518-8898675)
	1-637, gnl\|xenTro1\|scaffold_736 (367910-366929)