Ss1.1-Utr1-UTR010041F02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATCCTTTCTGGCCTGCTGTCTCTCCTTGGCTGCCTGTGCGCTCGGTTCGGCACCATGGG AAAGCGGGACAATCGGGTGGCCTATATGAACCCGATAGCAATGGCCAGATCAAGGGGTCC AATCCAGTCTTCAGGTCCAACGATCCAAGATTATCTGAATCGACCAAGGCCTACCTGGGA AGAAGTGAAAGAACAGCTAGAAAAGAAAAAGAAAGGCTCCAAGGCATTGGCTGAATTTGA AGAAAAAATGAATGAGAACTGGAAGAAAGAACTAGAAAAACACAGGGAGAAATTACTAAG TGGGAGCGAGAGCTCATCCAAAAAAAGACAGAGAAAGAAAAAAGAGAAGAAGAAATCTGG TAGGTATTCATCTTCTTCTTCATCGAGCTCTGATTCTTCCAGCAGTTCTTCAGATTCTGA AGATGAGGATAAGAAACAAGGAAAAAGGAAAAAGAAAAAGAAGAGCCGTTCACATAAATC TTCTGAAAGCTCCATGTCAGAAACTGAATCAGATAATAAGGATAGTTTAAAAAAGAAAAA GAAGTCAAAGGATATAACTGAGAAAGAAAAGGATGTTAAAGGACTCAGCAAAAAAAGAAA AATGTATCCTGAAGATAAACCTTTATCATCTGAGTCCCTATCAGAATCAGATTATACTGA GGAGGTACGAGCGAAAAAGAAGAAGAGCAGTGAAGAACGAGAAAAAACAACAGAAAAAAC AAAAAAGAAAAAGAAGCATAAGAAACACAGTAAGAAGAAGAAAAAGAAGGCTGCTAGTTC AAGTCCTGACTCACCATAGCATTAAGAAGAGAATCAGGATTCGCTTAGAAAGAAAGTGCA ATGTGTCTAAGGAAATATCAACTGTGAAAATAATGACATATTTACTAAAATGCATGAATT TTTTTGTTTTTAGAATTATTCCTGGACTATTCATTAGCTACTCAGATGCCGCTGTATGAA AGGGCCGTAATTGTTGCCTGCTGCTTGAACATCTCTTTTTTTCTCTTCCAGTGCTTGATA ACTGGAGATAATAATAACACTGCAGTCATACTAGTGGTTAAAATAATTTGGGAATAAAGT TAATATTTTTGACTAGAAGGTATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATCCTTTCTGGCCTGCTGTCTCTCCTTGGCTGCCTGTGCGCTCGGTTCGGCACCATGGG AAAGCGGGACAATCGGGTGGCCTATATGAACCCGATAGCAATGGCCAGATCAAGGGGTCC AATCCAGTCTTCAGGTCCAACGATCCAAGATTATCTGAATCGACCAAGGCCTACCTGGGA AGAAGTGAAAGAACAGCTAGAAAAGAAAAAGAAAGGCTCCAAGGCATTGGCTGAATTTGA AGAAAAAATGAATGAGAACTGGAAGAAAGAACTAGAAAAACACAGGGAGAAATTACTAAG TGGGAGCGAGAGCTCATCCAAAAAAAGACAGAGAAAGAAAAAAGAGAAGAAGAAATCTGG TAGGTATTCATCTTCTTCTTCATCGAGCTCTGATTCTTCCAGCAGTTCTTCAGATTCTGA AGATGAGGATAAGAAACAAGGAAAAAGGAAAAAGAAAAAGAAGAGCCGTTCACATAAATC TTCTGAAAGCTCCATGTCAGAAACTGAATCAGATAATAAGGATAGTTTAAAAAAGAAAAA GAAGTCAAAGGATATAACTGAGAAAGAAAAGGATGTTAAAGGACTCAGCAAAAAAAGAAA AATGTATCCTGAAGATAAACCTTTATCATCTGAGTCCCTATCAGAATCAGATTATACTGA GGAGGTACGAGCGAAAAAGAAGAAGAGCAGTGAAGAACGAGAAAAAACAACAGAAAAAAC AAAAAAGAAAAAGAAGCATAAGAAACACAGTAAGAAGAAGAAAAAGAAGGCTGCTAGTTC AAGTCCTGACTCACCATAGCATTAAGAAGAGAATCAGGATTCGCTTAGAAAGAAAGTGCA ATGTGTCTAAGGAAATATCAACTGTGAAAATAATGACATATTTACTAAAATGCATGAATT TTTTTGTTTTTAGAATTATTCCTGGACTATTCATTAGCTACTCAGATGCCGCTGTATGAA AGGGCCGTAATTGTTGCCTGCTGCTTGAACATCTCTTTTTTTCTCTTCCAGTGCTTGATA ACTGGAGATAATAATAACACTGCAGTCATACTAGTGGTTAAAATAATTTGGGAATAAAGT TAATATTTTTGACTAGAAGGTATC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 79-193, gnl|bosTau2|chr4 (4240321-4240208) | |
| 79-193, gnl|canFam2|chr1 (33825283-33825185) | |
| 79-193, gnl|canFam2|chr1 (33825281-33825185) | |
| 79-193, gnl|canFam2|chr1 (33825184-33825281) | |
| 79-193, gnl|canFam2|chr1 (33825184-33825281) | |
| 79-193, gnl|dasNov1|scaffold_11459 (56370-56272) | |
| 79-193, gnl|dasNov1|scaffold_11459 (56368-56272) | |
| 79-193, gnl|dasNov1|scaffold_11459 (56271-56368) | |
| 79-193, gnl|dasNov1|scaffold_11459 (56271-56368) | |
| 79-193, gnl|echTel1|scaffold_270150 (6290-6386) | |
| 79-193, gnl|echTel1|scaffold_270150 (6292-6386) | |
| 79-193, gnl|echTel1|scaffold_270150 (6387-6292) | |
| 79-193, gnl|echTel1|scaffold_270150 (6387-6292) | |
| 79-193, gnl|hg17|chr10 (60145344-60145441) | |
| 79-193, gnl|hg17|chr12 (25480383-25480481) | |
| 79-193, gnl|hg17|chr2 (28150881-28150977) | |
| 79-193, gnl|hg17|chr5 (60706720-60706817) | |
| 79-193, gnl|Hg17|chr7 (91855569-91855456) | |
| 79-193, gnl|loxAfr1|scaffold_2379 (43970-43872) | |
| 79-193, gnl|loxAfr1|scaffold_2379 (43968-43872) | |
| 79-193, gnl|loxAfr1|scaffold_2379 (43871-43968) | |
| 79-193, gnl|loxAfr1|scaffold_2379 (43871-43968) | |
| 79-193, gnl|mm7|chr5 (3560744-3560646) | |
| 79-193, gnl|mm7|chr5 (3560742-3560646) | |
| 79-193, gnl|mm7|chr5 (3560645-3560742) | |
| 79-193, gnl|mm7|chr5 (3560645-3560742) | |
| 79-193, gnl|Mm7|chr5 (3560644-3560753) | |
| 79-193, gnl|oryCun1|scaffold_123943 (6028-5930) | |
| 79-193, gnl|oryCun1|scaffold_123943 (6026-5930) | |
| 79-193, gnl|oryCun1|scaffold_123943 (5929-6026) | |
| 79-193, gnl|oryCun1|scaffold_123943 (5929-6026) | |
| 79-193, gnl|panTro1|chr12 (29097200-29097296) | |
| 79-193, gnl|panTro1|chr13 (47258654-47258557) | |
| 79-193, gnl|panTro1|chr8 (60928925-60929022) | |
| 79-193, gnl|panTro1|chrUn_random (51886632-51886730) | |
| 79-193, gnl|rheMac2|chr11 (25712549-25712647) | |
| 79-193, gnl|rheMac2|chr13 (28010690-28010786) | |
| 79-193, gnl|rheMac2|chr2 (13434632-13434730) | |
| 79-193, gnl|rheMac2|chr2 (13434632-13434730) | |
| 79-193, gnl|rn3|chrX (22138993-22139091) | |
| 79-193, gnl|rn3|chrX (22138995-22139091) | |
| 79-193, gnl|rn3|chrX (22139092-22138995) | |
| 79-193, gnl|rn3|chrX (22139092-22138995) | |
| 79-193, gnl|tetNig1|chr21_random (1459863-1459767) | |
| 79-193, gnl|tetNig1|chr21_random (1459766-1459863) | |
| 79-193, gnl|tetNig1|chr21_random (1459766-1459863) | |
| 713-1098, gnl|bosTau2|chr4 (4223839-4223468) | |
| 713-1098, gnl|Hg17|chr7 (91836333-91835954) | |
| 713-1098, gnl|Mm7|chr5 (3574993-3575357) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 79-193, gnl|bosTau2|chr4 (4240321-4240208) | |
| 79-193, gnl|canFam2|chr1 (33825283-33825185) | |
| 79-193, gnl|canFam2|chr1 (33825281-33825185) | |
| 79-193, gnl|canFam2|chr1 (33825184-33825281) | |
| 79-193, gnl|canFam2|chr1 (33825184-33825281) | |
| 79-193, gnl|dasNov1|scaffold_11459 (56370-56272) | |
| 79-193, gnl|dasNov1|scaffold_11459 (56368-56272) | |
| 79-193, gnl|dasNov1|scaffold_11459 (56271-56368) | |
| 79-193, gnl|dasNov1|scaffold_11459 (56271-56368) | |
| 79-193, gnl|echTel1|scaffold_270150 (6290-6386) | |
| 79-193, gnl|echTel1|scaffold_270150 (6292-6386) | |
| 79-193, gnl|echTel1|scaffold_270150 (6387-6292) | |
| 79-193, gnl|echTel1|scaffold_270150 (6387-6292) | |
| 79-193, gnl|hg17|chr10 (60145344-60145441) | |
| 79-193, gnl|hg17|chr12 (25480383-25480481) | |
| 79-193, gnl|hg17|chr2 (28150881-28150977) | |
| 79-193, gnl|hg17|chr5 (60706720-60706817) | |
| 79-193, gnl|Hg17|chr7 (91855569-91855456) | |
| 79-193, gnl|loxAfr1|scaffold_2379 (43970-43872) | |
| 79-193, gnl|loxAfr1|scaffold_2379 (43968-43872) | |
| 79-193, gnl|loxAfr1|scaffold_2379 (43871-43968) | |
| 79-193, gnl|loxAfr1|scaffold_2379 (43871-43968) | |
| 79-193, gnl|mm7|chr5 (3560744-3560646) | |
| 79-193, gnl|mm7|chr5 (3560742-3560646) | |
| 79-193, gnl|mm7|chr5 (3560645-3560742) | |
| 79-193, gnl|mm7|chr5 (3560645-3560742) | |
| 79-193, gnl|Mm7|chr5 (3560644-3560753) | |
| 79-193, gnl|oryCun1|scaffold_123943 (6028-5930) | |
| 79-193, gnl|oryCun1|scaffold_123943 (6026-5930) | |
| 79-193, gnl|oryCun1|scaffold_123943 (5929-6026) | |
| 79-193, gnl|oryCun1|scaffold_123943 (5929-6026) | |
| 79-193, gnl|panTro1|chr12 (29097200-29097296) | |
| 79-193, gnl|panTro1|chr13 (47258654-47258557) | |
| 79-193, gnl|panTro1|chr8 (60928925-60929022) | |
| 79-193, gnl|panTro1|chrUn_random (51886632-51886730) | |
| 79-193, gnl|rheMac2|chr11 (25712549-25712647) | |
| 79-193, gnl|rheMac2|chr13 (28010690-28010786) | |
| 79-193, gnl|rheMac2|chr2 (13434632-13434730) | |
| 79-193, gnl|rheMac2|chr2 (13434632-13434730) | |
| 79-193, gnl|rn3|chrX (22138993-22139091) | |
| 79-193, gnl|rn3|chrX (22138995-22139091) | |
| 79-193, gnl|rn3|chrX (22139092-22138995) | |
| 79-193, gnl|rn3|chrX (22139092-22138995) | |
| 79-193, gnl|tetNig1|chr21_random (1459863-1459767) | |
| 79-193, gnl|tetNig1|chr21_random (1459766-1459863) | |
| 79-193, gnl|tetNig1|chr21_random (1459766-1459863) | |
| 713-1098, gnl|bosTau2|chr4 (4223839-4223468) | |
| 713-1098, gnl|Hg17|chr7 (91836333-91835954) | |
| 713-1098, gnl|Mm7|chr5 (3574993-3575357) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) | |
| ecc (0.115035) |