Non-Coding RNA Search

Ss1.1-Utr1-UTR010041G03.5.5

Sequence:


               
               TCCCTGCCCGGGGGCGGCAGCGGCTGGTCGGCGGCAGCTCTGCGGGTGCGGGGGCGGCGA
GCCGAGGACCTAGCGATCGCGGCCGGAGCGCGCCGGCCACCGCCCGCACCGCCCTTCCGC
CCGCCCTCTGGACGGCCGCAGCCCTGCGGGTCTCCGCTCCAGACCCACCCCCGCCCCACC
CCGCGCGCCTCTGCCGCCTCTTCCAGAGCCCCAGCTTGCCCAGCGGCCGCCGCTGCCGCT
GTCTCCGCCGCCGCCGCCACCGCGCCAGGTTCCGGCCGCGGCCACCTTCCGCCGTCCAGG
GCCTCTCCATCTCGGCCCCGGGACCCCGGCTCCCCGCCAGCCCCGGCCCCGGCCCCGGCA
CCATGTCGGAGAAGAGCGTGGAGGCAGCGGCCGAGTTGAGCGCCAAGGACCTGAAGGAGA
AGAAAGAGAAAGTGGAGGAGAAGGCAAGCCGGAAAGAGCGAAAGAAAGAAGTGGTGGAGG
AAGAGGAGAACGGAGCTGAGGAGGAGGAAGAAGAAACTGCCGAGGACGGAGAGGAGGAAG
ATGAAGGGGACGAGGAAGATGAGGAAGAAGAAGAAGATGAGGACGAAGGGCCCGCGCTGA
AGAGAGCTGCCGAAGAGGAGGATGAAGCGGATCCCAAGCGGCAGAAGACAGAAAATGGGG
CATCGGCATGAGCCCCCTGCCAGTGGGCTGGGGTGGGAGGCCCCTCGGGGCCTTGAGGTG
GGGGTGGGGACAGCCCGAGTGCAGCCACCCTTCACCTGGCTCCCTGCTCTGGGCCCTGCG
CCCGAGCGGCCGCCCTCTCTCCCCAGCCTTCTCATGCCGACCCTCCAGTCACTGCCCTCT
CCATCCTCACTGCCATCTTCCACCTCCTGACCTCCCCCATCTGAGCTCCCCAGCTGGTCC
CAGTTCCCCCCTCCCTCCTCCTCCCCTTCCCTCCAGCCCAGCCCACTCTCCTCTGATACC
CTCTCCTTCCTAACCTCTGCATCCCAGCGTCACATCCTGCCCATCCCTACCCTGCCTGAT
CCCTGGGTCTCCCTCAGATCCCCTTCTCTCAGACAGCGCCAGGCCGGGTTGGGGCCAGGG
TTGGGGCCGAGCCCCACAGCTGCCCCCCTCCCCTCCCTTTTTTGTATAATTTAATAAAGA
AACGGTCGCGCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCTGCCCGGGGGCGGCAGCGGCTGGTCGGCGGCAGCTCTGCGGGTGCGGGGGCGGCGA
GCCGAGGACCTAGCGATCGCGGCCGGAGCGCGCCGGCCACCGCCCGCACCGCCCTTCCGC
CCGCCCTCTGGACGGCCGCAGCCCTGCGGGTCTCCGCTCCAGACCCACCCCCGCCCCACC
CCGCGCGCCTCTGCCGCCTCTTCCAGAGCCCCAGCTTGCCCAGCGGCCGCCGCTGCCGCT
GTCTCCGCCGCCGCCGCCACCGCGCCAGGTTCCGGCCGCGGCCACCTTCCGCCGTCCAGG
GCCTCTCCATCTCGGCCCCGGGACCCCGGCTCCCCGCCAGCCCCGGCCCCGGCCCCGGCA
CCATGTCGGAGAAGAGCGTGGAGGCAGCGGCCGAGTTGAGCGCCAAGGACCTGAAGGAGA
AGAAAGAGAAAGTGGAGGAGAAGGCAAGCCGGAAAGAGCGAAAGAAAGAAGTGGTGGAGG
AAGAGGAGAACGGAGCTGAGGAGGAGGAAGAAGAAACTGCCGAGGACGGAGAGGAGGAAG
ATGAAGGGGACGAGGAAGATGAGGAAGAAGAAGAAGATGAGGACGAAGGGCCCGCGCTGA
AGAGAGCTGCCGAAGAGGAGGATGAAGCGGATCCCAAGCGGCAGAAGACAGAAAATGGGG
CATCGGCATGAGCCCCCTGCCAGTGGGCTGGGGTGGGAGGCCCCTCGGGGCCTTGAGGTG
GGGGTGGGGACAGCCCGAGTGCAGCCACCCTTCACCTGGCTCCCTGCTCTGGGCCCTGCG
CCCGAGCGGCCGCCCTCTCTCCCCAGCCTTCTCATGCCGACCCTCCAGTCACTGCCCTCT
CCATCCTCACTGCCATCTTCCACCTCCTGACCTCCCCCATCTGAGCTCCCCAGCTGGTCC
CAGTTCCCCCCTCCCTCCTCCTCCCCTTCCCTCCAGCCCAGCCCACTCTCCTCTGATACC
CTCTCCTTCCTAACCTCTGCATCCCAGCGTCACATCCTGCCCATCCCTACCCTGCCTGAT
CCCTGGGTCTCCCTCAGATCCCCTTCTCTCAGACAGCGCCAGGCCGGGTTGGGGCCAGGG
TTGGGGCCGAGCCCCACAGCTGCCCCCCTCCCCTCCCTTTTTTGTATAATTTAATAAAGA
AACGGTCGCGCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               PTMS_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               PTMS_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               463-625, gnl|bosTau2|chr25 (37247759-37247597)
               

               
               463-625, gnl|Hg17|chr7 (5125752-5125917)
               

               
               463-625, gnl|Mm7|chr5 (141712527-141712662)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               463-625, gnl|bosTau2|chr25 (37247759-37247597)
               

               
               463-625, gnl|Hg17|chr7 (5125752-5125917)
               

               
               463-625, gnl|Mm7|chr5 (141712527-141712662)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               ebs (0.591506)
               

               
               ill (0.526778)
               

               
               csp (0.483559)
               

               
               ecc (0.46014)
               

               
               col (0.390016)
               

               
               eru (0.360144)
               

               
               fbs (0.350693)
               

               
               cli (0.305623)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               ute (0.265569)
               

               
               ese (0.253004)
               

               
               cly (0.241284)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.591506)
               

               
               ill (0.526778)
               

               
               csp (0.483559)
               

               
               ecc (0.46014)
               

               
               col (0.390016)
               

               
               eru (0.360144)
               

               
               fbs (0.350693)
               

               
               cli (0.305623)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               ute (0.265569)
               

               
               ese (0.253004)
               

               
               cly (0.241284)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	463-625, gnl\|bosTau2\|chr25 (37247759-37247597)
	463-625, gnl\|Hg17\|chr7 (5125752-5125917)
	463-625, gnl\|Mm7\|chr5 (141712527-141712662)

	ebs (0.591506)
	ill (0.526778)
	csp (0.483559)
	ecc (0.46014)
	col (0.390016)
	eru (0.360144)
	fbs (0.350693)
	cli (0.305623)
	fce (0.271592)
	nmm (0.265604)
	ute (0.265569)
	ese (0.253004)
	cly (0.241284)
	jca (0.22792)
	fli (0.202881)
	fcc (0.197785)
	eje (0.197668)
	nlu (0.191681)
	nep (0.183925)
	mcp (0.170648)
	hyp (0.142837)
	pty (0.142714)
	nca (0.136874)
	clu (0.119646)
	med (0.116252)
	jej (0.0989218)