Non-Coding RNA Search

Ss1.1-Utr1-UTR010041G07.5

Sequence:


               
               CAGCCTCCGGGTCTTCTCTGAAGCCCCGCGAATAAGCCCCCCGACCAGTCCTCTTTGCCC
TTGTTTTCTCCACAGACGTCGGCCCAGGCTGGGAGTTGGACCCTCACAAACTCAGAACCT
TCGAGGAGCCACCCTTGCTGGGGGAGTCGCTCGAACTCAGACGTCCCAATCTAGTGCGAC
CCGGCGGGGTCGGAGGCAGAGGTCACCATGGAGCAGTGTGCGAGCGTGGAGAGAGAGGTG
GACAAGGTCCTGCAGAAGTTCCTGACCTACGGGCAGCACTGTGAGCAGAGTCTGGAGGAG
TTGTTGCGCTACGTGGGCCAGCTGCGGGCTGAGCTGGCCAGCGCGGCGCTCCAGGGGACC
CCTCTCTCTGCCACCCTCTCCCTGGTGATGTCCCAGTGCTGCCGGAAGATAAAAGACACT
GTGCATAAACTGGCTTCGGACCACAAGGACATTCACAGCAGTGTCTCCCGAGTGGGGAAA
GCCATTGACAGGAACTTTGACTCTGAGATTTGCGGTGTAGTCTCCGATGCTGTTTGGGAC
TCTCGGGAGAAGCAGCAGCAGATCCTGCAGATGGCCATTGTGGAGCACCTGTACCAGCAG
GGCATGCTCAGTGTGGCTGAGGAACTGTGCCAGGAATCAACATTGAATGTGGACCTGGAT
TTCAAGCAGCCTTTCTTGGAGTTGAATCGAATCCTGGAAGCTCTGCACGAACAAGACTTG
GGGCCAGCACTGGAGTGGGCTGTCTCCCACAGGCAGCGACTGCTCGAGCTCAACAGCTCC
CTGGAGTTCAAGTTACACCGAATGCACTTCATTCGCCTCCTGGCAGGCGGCCCCGAGAAG
CAGCTGGAGGCCCTCAGCTACGCCCCGGCACTTCCAGCCCTTTGCTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCTCCGGGTCTTCTCTGAAGCCCCGCGAATAAGCCCCCCGACCAGTCCTCTTTGCCC
TTGTTTTCTCCACAGACGTCGGCCCAGGCTGGGAGTTGGACCCTCACAAACTCAGAACCT
TCGAGGAGCCACCCTTGCTGGGGGAGTCGCTCGAACTCAGACGTCCCAATCTAGTGCGAC
CCGGCGGGGTCGGAGGCAGAGGTCACCATGGAGCAGTGTGCGAGCGTGGAGAGAGAGGTG
GACAAGGTCCTGCAGAAGTTCCTGACCTACGGGCAGCACTGTGAGCAGAGTCTGGAGGAG
TTGTTGCGCTACGTGGGCCAGCTGCGGGCTGAGCTGGCCAGCGCGGCGCTCCAGGGGACC
CCTCTCTCTGCCACCCTCTCCCTGGTGATGTCCCAGTGCTGCCGGAAGATAAAAGACACT
GTGCATAAACTGGCTTCGGACCACAAGGACATTCACAGCAGTGTCTCCCGAGTGGGGAAA
GCCATTGACAGGAACTTTGACTCTGAGATTTGCGGTGTAGTCTCCGATGCTGTTTGGGAC
TCTCGGGAGAAGCAGCAGCAGATCCTGCAGATGGCCATTGTGGAGCACCTGTACCAGCAG
GGCATGCTCAGTGTGGCTGAGGAACTGTGCCAGGAATCAACATTGAATGTGGACCTGGAT
TTCAAGCAGCCTTTCTTGGAGTTGAATCGAATCCTGGAAGCTCTGCACGAACAAGACTTG
GGGCCAGCACTGGAGTGGGCTGTCTCCCACAGGCAGCGACTGCTCGAGCTCAACAGCTCC
CTGGAGTTCAAGTTACACCGAATGCACTTCATTCGCCTCCTGGCAGGCGGCCCCGAGAAG
CAGCTGGAGGCCCTCAGCTACGCCCCGGCACTTCCAGCCCTTTGCTCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61851289|ref|XP_593285.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61851289|ref|XP_593285.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               225-342, + strand, RNAz p=0.50706

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               225-342, + strand, RNAz p=0.50706

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC009911, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC009911, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               186-342, gnl|bosTau2|chr7 (22041048-22041204)
               

               
               186-342, gnl|Hg17|chr5 (177497688-177497861)
               

               
               186-342, gnl|Mm7|chr11 (51586393-51586237)
               


               
               343-492, gnl|bosTau2|chr7 (22047597-22047746)
               

               
               343-492, gnl|Hg17|chr5 (177502186-177502335)
               

               
               343-492, gnl|Mm7|chr11 (51584786-51584637)
               


               
               735-887, gnl|bosTau2|chr7 (22050471-22050622)
               

               
               735-887, gnl|Hg17|chr5 (177503549-177503700)
               

               
               735-887, gnl|Mm7|chr11 (51583659-51583508)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               186-342, gnl|bosTau2|chr7 (22041048-22041204)
               

               
               186-342, gnl|Hg17|chr5 (177497688-177497861)
               

               
               186-342, gnl|Mm7|chr11 (51586393-51586237)
               


               
               343-492, gnl|bosTau2|chr7 (22047597-22047746)
               

               
               343-492, gnl|Hg17|chr5 (177502186-177502335)
               

               
               343-492, gnl|Mm7|chr11 (51584786-51584637)
               


               
               735-887, gnl|bosTau2|chr7 (22050471-22050622)
               

               
               735-887, gnl|Hg17|chr5 (177503549-177503700)
               

               
               735-887, gnl|Mm7|chr11 (51583659-51583508)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cst (0.140036)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cst (0.140036)

	186-342, gnl\|bosTau2\|chr7 (22041048-22041204)
	186-342, gnl\|Hg17\|chr5 (177497688-177497861)
	186-342, gnl\|Mm7\|chr11 (51586393-51586237)

	343-492, gnl\|bosTau2\|chr7 (22047597-22047746)
	343-492, gnl\|Hg17\|chr5 (177502186-177502335)
	343-492, gnl\|Mm7\|chr11 (51584786-51584637)

	735-887, gnl\|bosTau2\|chr7 (22050471-22050622)
	735-887, gnl\|Hg17\|chr5 (177503549-177503700)
	735-887, gnl\|Mm7\|chr11 (51583659-51583508)

	cmu (0.186393)
	fty (0.17584)
	nje (0.16592)
	csp (0.161186)
	cst (0.140036)