Ss1.1-Utr1-UTR010041G09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAAACATTTCAAAGGTTTCTTTGGTCAGAACTTTCTAAATCATTGACATTTGGAAATAA TTTAAGAATAACAATTGTGTATTGCCCACAGAAATCATTTTTATTTTAATTGTTCAATTT AGGAAGTTCAAAATTGGTAAAGACCTGGGGTGATGTAATAAGTTAAGAGTTAACCTATAG GCAGAATGTTTGATGTTTTGAGAATAAAACATTGTATGTAAATGATGAAATGATGAATGA GGGTTTCTAGGCTTTTGTAGGTTGAAAATAGTGCCTTTCCTTGGTATTGAGTCCAGCCCC TGTGGGTACGAACGCGGGTTGGTTTTGGACCCTCTGCGAGGCGCCGCTACCACAGCTACC TGCGTTCGTTACAGGCGGACCACCCTCTTGACCAGTGTATAATGAATCCCAGCATGAAGC AGAAACAGGAAGGAATCCAAGAGAATGTAAAGAGTAGTCCTGTTCCAAGAAGAACTCTGA AGATGATTCAGCCTTCTGTGGCTGGATCTCTTGTTGGAAGAGAAAATGAGTCGGTTAAAG GCTTGTCCAAAAGGAAACAATGGAGTGACCAGTCAATATCAAAGACTTCCGGCTCTGGAG TTCTTACTGTCCCAGAACATAGTGAAAATAAAAATGTTGGAGGAGTGACCCAAGAAGCAT TTGATCTTATGATTACAGAAAATCCATCCTCTCAATATTGGAAAGAAGTGGCAGAAAAAC GGAGGAAGGCTCTCTATGAAACACTTAAAGAAAATGAGAAACTTCATAAAGAAATTGAAC AAAAGGACAATGAAATTGCCCTCCTGAAAAAGGAGAATAAAGAATTGGCAGAAGTAGCAG AACATGTGCAGTATATGGCAGCAGTAATAGAGAGACTGAGTGATGAACCTCTGGATAAAT TTGAATCACCGGATAGTCAAGAATTTGATTCTGAAGAGGAAACTGGTGAAGATTCTGAAG TAGAAGACTCAGAAATCGGTACATATGATGAAGAAGTCTCCTCCTCTACAGATGCAAAAC CATCTACATGAAATTCACTAATACTTGACTCTTGAGAAAAACACTGCCAAAGTTTACCTC CCCTGTAGTTCTTTGTAGTAGAGTAAATAACTTTATAAGGCAAATAACTTTATAAGCAAA CTTGGAATCAGACTTCCCTGTTTGTATCCTGGGACCCTGTTACTGTATTAAAATACAAAT ACTATGTATTTTTAATCTATGATATTTTGTGTAAATAGCATTTTCTCAGTTGTCAGACAT GACTTGTGTATATAATAAACTTCATTCTATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAAACATTTCAAAGGTTTCTTTGGTCAGAACTTTCTAAATCATTGACATTTGGAAATAA TTTAAGAATAACAATTGTGTATTGCCCACAGAAATCATTTTTATTTTAATTGTTCAATTT AGGAAGTTCAAAATTGGTAAAGACCTGGGGTGATGTAATAAGTTAAGAGTTAACCTATAG GCAGAATGTTTGATGTTTTGAGAATAAAACATTGTATGTAAATGATGAAATGATGAATGA GGGTTTCTAGGCTTTTGTAGGTTGAAAATAGTGCCTTTCCTTGGTATTGAGTCCAGCCCC TGTGGGTACGAACGCGGGTTGGTTTTGGACCCTCTGCGAGGCGCCGCTACCACAGCTACC TGCGTTCGTTACAGGCGGACCACCCTCTTGACCAGTGTATAATGAATCCCAGCATGAAGC AGAAACAGGAAGGAATCCAAGAGAATGTAAAGAGTAGTCCTGTTCCAAGAAGAACTCTGA AGATGATTCAGCCTTCTGTGGCTGGATCTCTTGTTGGAAGAGAAAATGAGTCGGTTAAAG GCTTGTCCAAAAGGAAACAATGGAGTGACCAGTCAATATCAAAGACTTCCGGCTCTGGAG TTCTTACTGTCCCAGAACATAGTGAAAATAAAAATGTTGGAGGAGTGACCCAAGAAGCAT TTGATCTTATGATTACAGAAAATCCATCCTCTCAATATTGGAAAGAAGTGGCAGAAAAAC GGAGGAAGGCTCTCTATGAAACACTTAAAGAAAATGAGAAACTTCATAAAGAAATTGAAC AAAAGGACAATGAAATTGCCCTCCTGAAAAAGGAGAATAAAGAATTGGCAGAAGTAGCAG AACATGTGCAGTATATGGCAGCAGTAATAGAGAGACTGAGTGATGAACCTCTGGATAAAT TTGAATCACCGGATAGTCAAGAATTTGATTCTGAAGAGGAAACTGGTGAAGATTCTGAAG TAGAAGACTCAGAAATCGGTACATATGATGAAGAAGTCTCCTCCTCTACAGATGCAAAAC CATCTACATGAAATTCACTAATACTTGACTCTTGAGAAAAACACTGCCAAAGTTTACCTC CCCTGTAGTTCTTTGTAGTAGAGTAAATAACTTTATAAGGCAAATAACTTTATAAGCAAA CTTGGAATCAGACTTCCCTGTTTGTATCCTGGGACCCTGTTACTGTATTAAAATACAAAT ACTATGTATTTTTAATCTATGATATTTTGTGTAAATAGCATTTTCTCAGTTGTCAGACAT GACTTGTGTATATAATAAACTTCATTCTATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 2-199, gnl|bosTau2|chr23 (26619068-26619271) | |
| 529-678, gnl|bosTau2|chr23 (26619643-26619792) | |
| 529-678, gnl|canFam2|chr35 (25820065-25819923) | |
| 529-678, gnl|echTel1|scaffold_191409 (4512-4655) | |
| 529-678, gnl|hg17|chr16 (16542925-16543084) | |
| 529-678, gnl|Hg17|chr6 (24889682-24889828) | |
| 529-678, gnl|Mm7|chr13 (24122539-24122402) | |
| 529-678, gnl|mm7|chr16 (65139665-65139800) | |
| 529-678, gnl|monDom2|scaffold_47 (9332850-9333003) | |
| 529-678, gnl|oryCun1|scaffold_147680 (7897-7772) | |
| 529-678, gnl|panTro1|chr18 (18572566-18572408) | |
| 529-678, gnl|rheMac2|chr20 (16183177-16183336) | |
| 529-678, gnl|rn3|chr11 (2560438-2560571) | |
| 762-872, gnl|bosTau2|chr23 (26622430-26622540) | |
| 762-872, gnl|canFam2|chr35 (25821137-25821031) | |
| 762-872, gnl|canFam2|chr35 (25821012-25821159) | |
| 762-872, gnl|danRer3|chr19 (44790536-44790373) | |
| 762-872, gnl|dasNov1|scaffold_83900 (5938-6026) | |
| 762-872, gnl|dasNov1|scaffold_83900 (6031-5942) | |
| 762-872, gnl|echTel1|scaffold_191409 (3012-3114) | |
| 762-872, gnl|echTel1|scaffold_191409 (3133-2990) | |
| 762-872, gnl|fr1|chrUn (145922762-145922602) | |
| 762-872, gnl|galGal2|chr2 (90094887-90094753) | |
| 762-872, gnl|hg17|chr16 (16542738-16542843) | |
| 762-872, gnl|hg17|chr6 (24892632-24892774) | |
| 762-872, gnl|Hg17|chr6 (24892651-24892761) | |
| 762-872, gnl|loxAfr1|scaffold_29401 (24916-25022) | |
| 762-872, gnl|loxAfr1|scaffold_29401 (25041-24898) | |
| 762-872, gnl|mm7|chr13 (24119281-24119139) | |
| 762-872, gnl|Mm7|chr13 (24119260-24119150) | |
| 762-872, gnl|mm7|chr16 (65139471-65139580) | |
| 762-872, gnl|monDom2|scaffold_47 (9332656-9332766) | |
| 762-872, gnl|oryCun1|scaffold_147680 (8585-8486) | |
| 762-872, gnl|oryCun1|scaffold_96667 (459-603) | |
| 762-872, gnl|panTro1|chr18 (18572753-18572648) | |
| 762-872, gnl|panTro1|chr5 (25341324-25341466) | |
| 762-872, gnl|rheMac2|chr20 (16182987-16183092) | |
| 762-872, gnl|rheMac2|chr4 (24791768-24791910) | |
| 762-872, gnl|rn3|chr11 (2560245-2560353) | |
| 762-872, gnl|rn3|chr17 (47381776-47381915) | |
| 762-872, gnl|tetNig1|chr21_random (1681680-1681556) | |
| 762-872, gnl|xenTro1|scaffold_185 (1130130-1130271) | |
| 1186-1315, gnl|bosTau2|chr17 (5390913-5390787) | |
| 1186-1315, gnl|Hg17|chr16 (18173699-18173829) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-199, gnl|bosTau2|chr23 (26619068-26619271) | |
| 529-678, gnl|bosTau2|chr23 (26619643-26619792) | |
| 529-678, gnl|canFam2|chr35 (25820065-25819923) | |
| 529-678, gnl|echTel1|scaffold_191409 (4512-4655) | |
| 529-678, gnl|hg17|chr16 (16542925-16543084) | |
| 529-678, gnl|Hg17|chr6 (24889682-24889828) | |
| 529-678, gnl|Mm7|chr13 (24122539-24122402) | |
| 529-678, gnl|mm7|chr16 (65139665-65139800) | |
| 529-678, gnl|monDom2|scaffold_47 (9332850-9333003) | |
| 529-678, gnl|oryCun1|scaffold_147680 (7897-7772) | |
| 529-678, gnl|panTro1|chr18 (18572566-18572408) | |
| 529-678, gnl|rheMac2|chr20 (16183177-16183336) | |
| 529-678, gnl|rn3|chr11 (2560438-2560571) | |
| 762-872, gnl|bosTau2|chr23 (26622430-26622540) | |
| 762-872, gnl|canFam2|chr35 (25821137-25821031) | |
| 762-872, gnl|canFam2|chr35 (25821012-25821159) | |
| 762-872, gnl|danRer3|chr19 (44790536-44790373) | |
| 762-872, gnl|dasNov1|scaffold_83900 (5938-6026) | |
| 762-872, gnl|dasNov1|scaffold_83900 (6031-5942) | |
| 762-872, gnl|echTel1|scaffold_191409 (3012-3114) | |
| 762-872, gnl|echTel1|scaffold_191409 (3133-2990) | |
| 762-872, gnl|fr1|chrUn (145922762-145922602) | |
| 762-872, gnl|galGal2|chr2 (90094887-90094753) | |
| 762-872, gnl|hg17|chr16 (16542738-16542843) | |
| 762-872, gnl|hg17|chr6 (24892632-24892774) | |
| 762-872, gnl|Hg17|chr6 (24892651-24892761) | |
| 762-872, gnl|loxAfr1|scaffold_29401 (24916-25022) | |
| 762-872, gnl|loxAfr1|scaffold_29401 (25041-24898) | |
| 762-872, gnl|mm7|chr13 (24119281-24119139) | |
| 762-872, gnl|Mm7|chr13 (24119260-24119150) | |
| 762-872, gnl|mm7|chr16 (65139471-65139580) | |
| 762-872, gnl|monDom2|scaffold_47 (9332656-9332766) | |
| 762-872, gnl|oryCun1|scaffold_147680 (8585-8486) | |
| 762-872, gnl|oryCun1|scaffold_96667 (459-603) | |
| 762-872, gnl|panTro1|chr18 (18572753-18572648) | |
| 762-872, gnl|panTro1|chr5 (25341324-25341466) | |
| 762-872, gnl|rheMac2|chr20 (16182987-16183092) | |
| 762-872, gnl|rheMac2|chr4 (24791768-24791910) | |
| 762-872, gnl|rn3|chr11 (2560245-2560353) | |
| 762-872, gnl|rn3|chr17 (47381776-47381915) | |
| 762-872, gnl|tetNig1|chr21_random (1681680-1681556) | |
| 762-872, gnl|xenTro1|scaffold_185 (1130130-1130271) | |
| 1186-1315, gnl|bosTau2|chr17 (5390913-5390787) | |
| 1186-1315, gnl|Hg17|chr16 (18173699-18173829) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| lin (0.728014) | |
| cut (0.509771) | |
| tes (0.415628) | |
| ret (0.3862) | |
| rec (0.346141) | |
| cki (0.330469) | |
| ski (0.29347) | |
| liv (0.292569) | |
| spl (0.286369) | |
| spc (0.226732) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fty (0.17584) | |
| cje (0.165235) | |
| nco (0.161734) | |
| mga (0.160205) | |
| ctl (0.153069) | |
| lun (0.150489) | |
| isp (0.150376) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ova (0.129132) | |
| thg (0.126791) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eep (0.122564) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (0.728014) | |
| cut (0.509771) | |
| tes (0.415628) | |
| ret (0.3862) | |
| rec (0.346141) | |
| cki (0.330469) | |
| ski (0.29347) | |
| liv (0.292569) | |
| spl (0.286369) | |
| spc (0.226732) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fty (0.17584) | |
| cje (0.165235) | |
| nco (0.161734) | |
| mga (0.160205) | |
| ctl (0.153069) | |
| lun (0.150489) | |
| isp (0.150376) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ova (0.129132) | |
| thg (0.126791) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eep (0.122564) |