Non-Coding RNA Search

Ss1.1-Utr1-UTR010042A10.5

Sequence:


               
               CATCGGGGCCCCCTGGGCAGGGCCATCCCCCGCACCTGCAGCAGATGGGCGGCTACCTGG
CGCGTGGGGACTTCTCCATGCAGCAGCACGGCCAGCCGCAGCCGAGGATGAGCCAGTTTC
CCCAGGGTCAGGAGGGCCTCAGCCAGGGAAACCCTTTCATCACCACCTCGGGCCCTGGCC
ACTTGTCGCACGTGCCCGCGCAGAGCCCCGGCGTGGCGCCCTCACGCCACACAGTGCAGC
CCTTCCACCACCACCCCCCCACTGCTCTCCACGGAGAATCCGTCGCCCACAGCCCCAGGT
TCTCCCCTAACCCTCCTCAGCAAGGGGCTGTTAGGCCACAAACCCTTAACTTTAGTTCTC
GGAGCCAGACGGCCCCCTCACCTACTCTAAACAACTCAGGGCAGTATTCTCGCTATCCTT
ACAGTAACCTAAATCAGGGATTAGTTAACAATACAGGGATGAATCAAAATTTAGGCCTTA
CAAATAATACTCCAATGAATCAGTCCGTACCAAGATACCCCAACGCCGTAGGATTCCCGT
CCAACAGTGGTCAAGGACTAATGCACCAGCAGCCCGTCCACCCCAGCGGCTCACTGAACC
AAATGAACACACAAACTATGCATCCTTCACAGCCTCAGGGAACGTATGCCTCTCCGCCTC
CCATGTCACCCATGAAAGCGCTGAGTAACCCGGCAGGGACGCCCCCCCCGCAGGTCAGGC
CGGGGAGCGCTGGGATCCCGATGGACGTCGGCAGTTACCCCACCGTGCCCCACCCGCCCC
CGGGGGCCCTGGGCATCGGACAGAGGAGCGTGGGACCCCGGAACATGCAGCAGTCCCGTC
CGTTTATGGGCATGTCCTCAGCCCCAAGGGAGCTGGCCGGGCACCTGAGACCGAACGGGT
GTCCTGGCGTGGGCCTCGCCGACCCGCAGGCCCTCCAGGAACGACTGCTCCCCGGCCAGC
AGCACCCCGGCCAGCAGCCGTCCTTCCAGCAGTTGCCAACCTGCCCTCCGCTGCAGCCCC
ACCCGGGCCTGCACCACCAGCCTTCGCCCCCACACCCGCACCACCAGCCCTGGGCACAGC
TCCACCCGTCGCCCCAGAACACCCCGCAGAAAGTGCCTGTGCCGCAGCATTCTCCATCGG
AGCCCTTTCTAGAGAAACCAGTGCCGGATATGACTCAGGTTAGTGGACCGAACGCCCAGC
TAGTGAAGAGTGATGATTACCTGCCGTCCATAGAACAGCAGCCACAGCAGAAGAAGAAGA
AAAAGAAAAACAACCACATCGTTGCAGAGGATCCCAGTAAAAGTTTCGGTAAAGATGACG
TCCCTGGTGGGGTTGATACCCAGGAACTAAACAGGAACTCACTAGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCGGGGCCCCCTGGGCAGGGCCATCCCCCGCACCTGCAGCAGATGGGCGGCTACCTGG
CGCGTGGGGACTTCTCCATGCAGCAGCACGGCCAGCCGCAGCCGAGGATGAGCCAGTTTC
CCCAGGGTCAGGAGGGCCTCAGCCAGGGAAACCCTTTCATCACCACCTCGGGCCCTGGCC
ACTTGTCGCACGTGCCCGCGCAGAGCCCCGGCGTGGCGCCCTCACGCCACACAGTGCAGC
CCTTCCACCACCACCCCCCCACTGCTCTCCACGGAGAATCCGTCGCCCACAGCCCCAGGT
TCTCCCCTAACCCTCCTCAGCAAGGGGCTGTTAGGCCACAAACCCTTAACTTTAGTTCTC
GGAGCCAGACGGCCCCCTCACCTACTCTAAACAACTCAGGGCAGTATTCTCGCTATCCTT
ACAGTAACCTAAATCAGGGATTAGTTAACAATACAGGGATGAATCAAAATTTAGGCCTTA
CAAATAATACTCCAATGAATCAGTCCGTACCAAGATACCCCAACGCCGTAGGATTCCCGT
CCAACAGTGGTCAAGGACTAATGCACCAGCAGCCCGTCCACCCCAGCGGCTCACTGAACC
AAATGAACACACAAACTATGCATCCTTCACAGCCTCAGGGAACGTATGCCTCTCCGCCTC
CCATGTCACCCATGAAAGCGCTGAGTAACCCGGCAGGGACGCCCCCCCCGCAGGTCAGGC
CGGGGAGCGCTGGGATCCCGATGGACGTCGGCAGTTACCCCACCGTGCCCCACCCGCCCC
CGGGGGCCCTGGGCATCGGACAGAGGAGCGTGGGACCCCGGAACATGCAGCAGTCCCGTC
CGTTTATGGGCATGTCCTCAGCCCCAAGGGAGCTGGCCGGGCACCTGAGACCGAACGGGT
GTCCTGGCGTGGGCCTCGCCGACCCGCAGGCCCTCCAGGAACGACTGCTCCCCGGCCAGC
AGCACCCCGGCCAGCAGCCGTCCTTCCAGCAGTTGCCAACCTGCCCTCCGCTGCAGCCCC
ACCCGGGCCTGCACCACCAGCCTTCGCCCCCACACCCGCACCACCAGCCCTGGGCACAGC
TCCACCCGTCGCCCCAGAACACCCCGCAGAAAGTGCCTGTGCCGCAGCATTCTCCATCGG
AGCCCTTTCTAGAGAAACCAGTGCCGGATATGACTCAGGTTAGTGGACCGAACGCCCAGC
TAGTGAAGAGTGATGATTACCTGCCGTCCATAGAACAGCAGCCACAGCAGAAGAAGAAGA
AAAAGAAAAACAACCACATCGTTGCAGAGGATCCCAGTAAAAGTTTCGGTAAAGATGACG
TCCCTGGTGGGGTTGATACCCAGGAACTAAACAGGAACTCACTAGATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26335285|dbj|BAC31343.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26335285|dbj|BAC31343.1|

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               200-396, - strand, RNAz p=0.995992
               

               
               294-389, - strand, RNAz p=0.703814
               

               
               856-1095, - strand, RNAz p=0.816081

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-396, - strand, RNAz p=0.995992
               

               
               294-389, - strand, RNAz p=0.703814
               

               
               856-1095, - strand, RNAz p=0.816081

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-1127, gnl|bosTau2|chr14 (15017467-15016338)
               

               
               1-1127, gnl|canFam2|chr29 (14160165-14161054)
               

               
               1-1127, gnl|danRer3|chr2 (10760050-10761028)
               

               
               1-1127, gnl|galGal2|chr2 (112274814-112275706)
               

               
               1-1127, gnl|hg17|chr8 (61817060-61817949)
               

               
               1-1127, gnl|Hg17|chr8 (61817066-61818210)
               

               
               1-1127, gnl|loxAfr1|scaffold_49580 (2453-1564)
               

               
               1-1127, gnl|mm7|chr4 (8679148-8680037)
               

               
               1-1127, gnl|Mm7|chr4 (8679154-8680295)
               

               
               1-1127, gnl|monDom2|scaffold_4 (102079015-102078129)
               

               
               1-1127, gnl|oryCun1|scaffold_202653 (41063-41952)
               

               
               1-1127, gnl|panTro1|chr7 (63661245-63662134)
               

               
               1-1127, gnl|rheMac2|chr8 (63324175-63325064)
               

               
               1-1127, gnl|rn3|chr5 (22591942-22592825)
               

               
               1-1127, gnl|xenTro1|scaffold_8 (4097357-4098240)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1127, gnl|bosTau2|chr14 (15017467-15016338)
               

               
               1-1127, gnl|canFam2|chr29 (14160165-14161054)
               

               
               1-1127, gnl|danRer3|chr2 (10760050-10761028)
               

               
               1-1127, gnl|galGal2|chr2 (112274814-112275706)
               

               
               1-1127, gnl|hg17|chr8 (61817060-61817949)
               

               
               1-1127, gnl|Hg17|chr8 (61817066-61818210)
               

               
               1-1127, gnl|loxAfr1|scaffold_49580 (2453-1564)
               

               
               1-1127, gnl|mm7|chr4 (8679148-8680037)
               

               
               1-1127, gnl|Mm7|chr4 (8679154-8680295)
               

               
               1-1127, gnl|monDom2|scaffold_4 (102079015-102078129)
               

               
               1-1127, gnl|oryCun1|scaffold_202653 (41063-41952)
               

               
               1-1127, gnl|panTro1|chr7 (63661245-63662134)
               

               
               1-1127, gnl|rheMac2|chr8 (63324175-63325064)
               

               
               1-1127, gnl|rn3|chr5 (22591942-22592825)
               

               
               1-1127, gnl|xenTro1|scaffold_8 (4097357-4098240)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fce (0.271592)
               

               
               mcp (0.170648)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               mcp (0.170648)

	200-396, - strand, RNAz p=0.995992
	294-389, - strand, RNAz p=0.703814
	856-1095, - strand, RNAz p=0.816081

	1-1127, gnl\|bosTau2\|chr14 (15017467-15016338)
	1-1127, gnl\|canFam2\|chr29 (14160165-14161054)
	1-1127, gnl\|danRer3\|chr2 (10760050-10761028)
	1-1127, gnl\|galGal2\|chr2 (112274814-112275706)
	1-1127, gnl\|hg17\|chr8 (61817060-61817949)
	1-1127, gnl\|Hg17\|chr8 (61817066-61818210)
	1-1127, gnl\|loxAfr1\|scaffold_49580 (2453-1564)
	1-1127, gnl\|mm7\|chr4 (8679148-8680037)
	1-1127, gnl\|Mm7\|chr4 (8679154-8680295)
	1-1127, gnl\|monDom2\|scaffold_4 (102079015-102078129)
	1-1127, gnl\|oryCun1\|scaffold_202653 (41063-41952)
	1-1127, gnl\|panTro1\|chr7 (63661245-63662134)
	1-1127, gnl\|rheMac2\|chr8 (63324175-63325064)
	1-1127, gnl\|rn3\|chr5 (22591942-22592825)
	1-1127, gnl\|xenTro1\|scaffold_8 (4097357-4098240)