Ss1.1-Utr1-UTR010042D02.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTGGGCGTCTCCTCTCTCTGTGCGCGGACCTGCTGGCGGGCGCTCGGCTTTCGGCGGCG GCGGCGGCGGCGGCGGCGGCTCAGGGGGTCCCGACGCGGCCCCGGTTCAGCGCGCGCAGC CACCATGACGGGAAGTAACATGTCCAACGCCTTGGCCAATGCGGTGTGCCAGCGCTGCCA GGCGCGCTTTGCTCCCTCCGAGCGGATCGTCAACAGCAACGGAGAGCTGTACCACGAACA CTGCTTTGTGTGTGCGCAGTGCTTCCGGCCCTTCCCGGAGGGGCTCTTCTATGAGTTCGA AGGTCGGAAGTACTGCGAACATGACTTCCAGATGCTGTTTGCTCCGTGCTGTGGGTCATG CGGTGAATTCATCATTGGCCGTGTTATCAAGGCCATGAACAACAACTGGCACCCTGGGTG CTTCCGCTGTGAGCTGTGTGACGTGGAGCTGGCTGACCTGGGCTTTGTGAAGAATGCAGG CAGGCATCTGTGCCGTCCTTGCCACAACCGCGAGAAGGCCAAGGGCCTGGGCAAGTACAT CTGTCAGCGGTGCCACCTGGTCATCGATGAGCAGCCCCTCATGTTCAGGAATGACGCCTA CCACCCGGATCACTTCAACTGCACCCACTGCGGGAAGGAGCTGACTGCAGAAGCCCGGGA GCTGAAGGGCGAGCTCTACTGCTTGCCGTGCCATGACAAGATGGGTGTGCCTATCTGTGG GGCCTGCCGCCGGCCCATCGAGGGCCGTGTGGTCAACGCATTAGGGAAGCAGTGGCACGT GGAGCATTTTGTCTGTGCCAAGTGTGAGAAGCCATTCCTGGGGCACCGACACTACGAGAA GAAAGGCCTGGCCTACTGTGAGACCCACTACAACCAGCTCTTTGGGGACGTCTGCTACAA CTGTAGCCACGTGATCGAGGGTGATGTGGTATCAGCCCTCAACAAGGCCTGGTGTGTGAA CTGCTTCTCCTGTTCCACCTGCAACAGCCGGCTCACCCTGAAGAACAAGTTTGTGGAGTT CGACATGAAGCCCGTGTGTAAGAGGTGCTATGAGAAGTTCCCGCTGGAGCTGAAGAAGCG GCTGAAGAAGCTGTCGGAGCTGGTGGCCCGCAGGGCACAGCCCAAGTCCTCAGGCCTCCA CTCTGCCTGAGAGGCCACCTGCCCATGTCCTGCTCCAGACAGCAACGCTTCTGCGGGCGG CTTTGCTCCCCACCAGCATCCTGTATATGTAGCCTCTTCATCTCCCCTCTCCCCGTCTCT CTGCTCAGCATCCCTCCTCCTCCTTCTGGTCCCTCACTCCCACCTCCTACCCAGGCATCC TTCCTCTCCCTCCTTCTTGCAGCCCCGGGTTAGGGCACTGGATGTGGTGAGCCTGCGACA AGGTCTGCATCCACAGCTCCAACCCAAGAAGCAAACTGGGGCCGGGGTTACCTAGCCCAG CCTGTCCTGACCTGTTCCATCCCGATGGGTGGCTTCATGGCTCATATTCTCTGTGGCAGC TTAGCCAGCCTCCCCCCTGGAGGGGGCCCCACATGTGCACGTGGCATGGGTGTGGCACCC AGCCAGGCAGCCACCCGGGCAGCTTGTCTGTCCCACGACCACGCGCTCAACCTACTGCCA GGGCACGTGCTCACTCTCCCCATGCAGCCTGGGGCCAGGAGGTGGTGGGCTCTGTGGGGG TACATTCCTGCTCTCCAGAGAGGACAGCACGGGACCTGGCATCCGACTCACACTTGCACA ATGAATGAAGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTGGGCGTCTCCTCTCTCTGTGCGCGGACCTGCTGGCGGGCGCTCGGCTTTCGGCGGCG GCGGCGGCGGCGGCGGCGGCTCAGGGGGTCCCGACGCGGCCCCGGTTCAGCGCGCGCAGC CACCATGACGGGAAGTAACATGTCCAACGCCTTGGCCAATGCGGTGTGCCAGCGCTGCCA GGCGCGCTTTGCTCCCTCCGAGCGGATCGTCAACAGCAACGGAGAGCTGTACCACGAACA CTGCTTTGTGTGTGCGCAGTGCTTCCGGCCCTTCCCGGAGGGGCTCTTCTATGAGTTCGA AGGTCGGAAGTACTGCGAACATGACTTCCAGATGCTGTTTGCTCCGTGCTGTGGGTCATG CGGTGAATTCATCATTGGCCGTGTTATCAAGGCCATGAACAACAACTGGCACCCTGGGTG CTTCCGCTGTGAGCTGTGTGACGTGGAGCTGGCTGACCTGGGCTTTGTGAAGAATGCAGG CAGGCATCTGTGCCGTCCTTGCCACAACCGCGAGAAGGCCAAGGGCCTGGGCAAGTACAT CTGTCAGCGGTGCCACCTGGTCATCGATGAGCAGCCCCTCATGTTCAGGAATGACGCCTA CCACCCGGATCACTTCAACTGCACCCACTGCGGGAAGGAGCTGACTGCAGAAGCCCGGGA GCTGAAGGGCGAGCTCTACTGCTTGCCGTGCCATGACAAGATGGGTGTGCCTATCTGTGG GGCCTGCCGCCGGCCCATCGAGGGCCGTGTGGTCAACGCATTAGGGAAGCAGTGGCACGT GGAGCATTTTGTCTGTGCCAAGTGTGAGAAGCCATTCCTGGGGCACCGACACTACGAGAA GAAAGGCCTGGCCTACTGTGAGACCCACTACAACCAGCTCTTTGGGGACGTCTGCTACAA CTGTAGCCACGTGATCGAGGGTGATGTGGTATCAGCCCTCAACAAGGCCTGGTGTGTGAA CTGCTTCTCCTGTTCCACCTGCAACAGCCGGCTCACCCTGAAGAACAAGTTTGTGGAGTT CGACATGAAGCCCGTGTGTAAGAGGTGCTATGAGAAGTTCCCGCTGGAGCTGAAGAAGCG GCTGAAGAAGCTGTCGGAGCTGGTGGCCCGCAGGGCACAGCCCAAGTCCTCAGGCCTCCA CTCTGCCTGAGAGGCCACCTGCCCATGTCCTGCTCCAGACAGCAACGCTTCTGCGGGCGG CTTTGCTCCCCACCAGCATCCTGTATATGTAGCCTCTTCATCTCCCCTCTCCCCGTCTCT CTGCTCAGCATCCCTCCTCCTCCTTCTGGTCCCTCACTCCCACCTCCTACCCAGGCATCC TTCCTCTCCCTCCTTCTTGCAGCCCCGGGTTAGGGCACTGGATGTGGTGAGCCTGCGACA AGGTCTGCATCCACAGCTCCAACCCAAGAAGCAAACTGGGGCCGGGGTTACCTAGCCCAG CCTGTCCTGACCTGTTCCATCCCGATGGGTGGCTTCATGGCTCATATTCTCTGTGGCAGC TTAGCCAGCCTCCCCCCTGGAGGGGGCCCCACATGTGCACGTGGCATGGGTGTGGCACCC AGCCAGGCAGCCACCCGGGCAGCTTGTCTGTCCCACGACCACGCGCTCAACCTACTGCCA GGGCACGTGCTCACTCTCCCCATGCAGCCTGGGGCCAGGAGGTGGTGGGCTCTGTGGGGG TACATTCCTGCTCTCCAGAGAGGACAGCACGGGACCTGGCATCCGACTCACACTTGCACA ATGAATGAAGGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 134-295, gnl|bosTau2|chr2 (3637200-3637361) | |
| 134-295, gnl|canFam2|chr19 (25974667-25974482) | |
| 134-295, gnl|danRer3|chr14 (43004122-43004304) | |
| 134-295, gnl|dasNov1|scaffold_94952 (4714-4523) | |
| 134-295, gnl|echTel1|scaffold_182908 (2840-3030) | |
| 134-295, gnl|fr1|chrUn (97143100-97142918) | |
| 134-295, gnl|galGal2|chr9 (820994-821175) | |
| 134-295, gnl|hg17|chr2 (128131196-128131386) | |
| 134-295, gnl|Hg17|chr2 (128131368-128131207) | |
| 134-295, gnl|loxAfr1|scaffold_196339 (936-757) | |
| 134-295, gnl|mm7|chr18 (32333990-32333798) | |
| 134-295, gnl|Mm7|chr18 (32333816-32333977) | |
| 134-295, gnl|monDom2|scaffold_24 (43251962-43251768) | |
| 134-295, gnl|oryCun1|scaffold_209722 (58873-59059) | |
| 134-295, gnl|panTro1|chr13 (14253566-14253756) | |
| 134-295, gnl|rheMac2|chr13 (134117723-134117913) | |
| 134-295, gnl|rn3|chr18 (24395444-24395258) | |
| 134-295, gnl|tetNig1|chr2 (14264982-14264800) | |
| 134-295, gnl|xenTro1|scaffold_1258 (10129-9940) | |
| 481-648, gnl|bosTau2|chr2 (3650623-3650791) | |
| 481-648, gnl|canFam2|chr19 (25990650-25990499) | |
| 481-648, gnl|danRer3|chr14 (42961754-42961913) | |
| 481-648, gnl|echTel1|scaffold_311673 (3673-3824) | |
| 481-648, gnl|fr1|chrUn (97144413-97144268) | |
| 481-648, gnl|Hg17|chr2 (128116880-128116693) | |
| 481-648, gnl|hg17|chr4 (35889763-35889929) | |
| 481-648, gnl|mm7|chr18 (32346661-32346511) | |
| 481-648, gnl|Mm7|chr18 (32346511-32346687) | |
| 481-648, gnl|oryCun1|scaffold_119923 (2275-2424) | |
| 481-648, gnl|panTro1|chr3 (38548322-38548488) | |
| 481-648, gnl|rheMac2|chr5 (31043958-31044124) | |
| 481-648, gnl|rn3|chr18 (24408465-24408314) | |
| 481-648, gnl|tetNig1|chr5 (8319338-8319184) | |
| 975-1408, gnl|bosTau2|chr2 (3654018-3654427) | |
| 975-1408, gnl|Hg17|chr2 (128113261-128112804) | |
| 975-1408, gnl|Mm7|chr18 (32349900-32350274) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 134-295, gnl|bosTau2|chr2 (3637200-3637361) | |
| 134-295, gnl|canFam2|chr19 (25974667-25974482) | |
| 134-295, gnl|danRer3|chr14 (43004122-43004304) | |
| 134-295, gnl|dasNov1|scaffold_94952 (4714-4523) | |
| 134-295, gnl|echTel1|scaffold_182908 (2840-3030) | |
| 134-295, gnl|fr1|chrUn (97143100-97142918) | |
| 134-295, gnl|galGal2|chr9 (820994-821175) | |
| 134-295, gnl|hg17|chr2 (128131196-128131386) | |
| 134-295, gnl|Hg17|chr2 (128131368-128131207) | |
| 134-295, gnl|loxAfr1|scaffold_196339 (936-757) | |
| 134-295, gnl|mm7|chr18 (32333990-32333798) | |
| 134-295, gnl|Mm7|chr18 (32333816-32333977) | |
| 134-295, gnl|monDom2|scaffold_24 (43251962-43251768) | |
| 134-295, gnl|oryCun1|scaffold_209722 (58873-59059) | |
| 134-295, gnl|panTro1|chr13 (14253566-14253756) | |
| 134-295, gnl|rheMac2|chr13 (134117723-134117913) | |
| 134-295, gnl|rn3|chr18 (24395444-24395258) | |
| 134-295, gnl|tetNig1|chr2 (14264982-14264800) | |
| 134-295, gnl|xenTro1|scaffold_1258 (10129-9940) | |
| 481-648, gnl|bosTau2|chr2 (3650623-3650791) | |
| 481-648, gnl|canFam2|chr19 (25990650-25990499) | |
| 481-648, gnl|danRer3|chr14 (42961754-42961913) | |
| 481-648, gnl|echTel1|scaffold_311673 (3673-3824) | |
| 481-648, gnl|fr1|chrUn (97144413-97144268) | |
| 481-648, gnl|Hg17|chr2 (128116880-128116693) | |
| 481-648, gnl|hg17|chr4 (35889763-35889929) | |
| 481-648, gnl|mm7|chr18 (32346661-32346511) | |
| 481-648, gnl|Mm7|chr18 (32346511-32346687) | |
| 481-648, gnl|oryCun1|scaffold_119923 (2275-2424) | |
| 481-648, gnl|panTro1|chr3 (38548322-38548488) | |
| 481-648, gnl|rheMac2|chr5 (31043958-31044124) | |
| 481-648, gnl|rn3|chr18 (24408465-24408314) | |
| 481-648, gnl|tetNig1|chr5 (8319338-8319184) | |
| 975-1408, gnl|bosTau2|chr2 (3654018-3654427) | |
| 975-1408, gnl|Hg17|chr2 (128113261-128112804) | |
| 975-1408, gnl|Mm7|chr18 (32349900-32350274) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| pty (0.428143) | |
| fli (0.405762) | |
| cty (0.31224) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| cov (0.264306) | |
| mas (0.210305) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| nco (0.161734) | |
| cli (0.152812) | |
| cag (0.151194) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| eje (0.0988338) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.428143) | |
| fli (0.405762) | |
| cty (0.31224) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| cov (0.264306) | |
| mas (0.210305) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| nco (0.161734) | |
| cli (0.152812) | |
| cag (0.151194) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| eje (0.0988338) |