Ss1.1-Utr1-UTR010042D11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCCGCCCTGACGGAGCCCTACTGCGCCATCTGTACTCTCTTCTACCCATACAGCCAG TCCCTACAGACCGAGAAGGAGACTCCCCAGGCCTCCCTCGGGGAGGGCCCTTCGGCCACA CCGCCTTCCAAAAGTGGCCAGAAGACACGGCCGCTGATCCCCGAGATGTGCTTCATCTCC AGCGGCGAAAACACAGAGCCACTCCCCGCCAACTCGTACATCGGTGACGACGGAACCAGC CTGCTGATCGCCTGTGCCAAGTGCTGCCTGCAGGTCCACGCCAGTTGCTACGGCATCCGC CCTGAGCTGGTCAATGAGGGCTGGACGTGTTCCCGGTGCGCGGCCCACGCCTGGACTGCG GAGTGCTGCCTGTGCAACCTCCGCGGAGGAGCCCTGCAGATGACGACGGACAGGAGGTGG ATCCACGTGATCTGCGCCATTGCCGTCCCCGAAGTGCGGTTCCTGAACGTGATGGAGCGC CACCCCGTGGACATCAGCGCCATCCCCGAGCAGCGGTGGAAGCTGAAATGTGTGTACTGT CGGAAGCGGATGAAGAAGGTGTCTGGCGCCTGCATCCAGTGCTCCTGTGAGCACTGCTCC ACCTCCTTCCATGTGACCTGTGCCCACGCCGCCGGCGTCCTCATGGAGCCAGATGACTGG CCCTACGTCGTCTCCATCACCTGCTTCAAGCACAAGTCAGGGAGCCACAACGTCCAGGTC CTGAGGGCCGTGTCCTTAGGCCAGGTGGTCATCACCAAGAACCGCAACGGGCTTTACTAC CGGTGCCGTGTCATTGGCACCACCACGCAGACCTTCTACGAAGTGAACTTTGACGATGGG TCCTACAGCGACAACCTGTACCCAGAGAGCATCACTAGTAGAGACTGTGTCCGGCTGGGA CCCCCGCCCGAGGGCGAGTTTGTTGAGCTCCGGTGGACTGACGGCAACATCTACAGGGCC AAGTTCATTTCCTCAGTGACCAGTCACATCTACCAGGTGGAATTCGAGGACGGGTCCCAG CTGACGGTGAAGCGTGGCGACCTCTTCACGCTGGACGAGGAGCTCCCCAAGAGGGTCCGG TCGCGCCTATCGGTCAGCACCGGGGCCCCACAGGAAAACGTCTTCTCGGGAGAGGAGGTG AAGGCCGCCAAGCGCCCGCGGGTGGGCACCCCTCGCGCCGCAGAGGACTCGGGGCGGAAC CCGGACTACCTGGCCTTCATGGAGAGCCTCCTGCAGGCTCAGTGCCGGCCCGGAGCCTCC TTCTAGGCCAGCCGGCTGCCCAGCGACCCCCTCGGCCCAGCAAGGCAGGCGCGGCGGGCC CTGGCGTTTGCTTGCTGTGTGAATCCCTGTCCTCGCCTCCCCCGCCCGAGAGCCTACCTC GGCGGCGGCGGCGACAGGAGCGAGCAGGACGCCGCACGCGCCCCCGGACTCAGGGAGCAG GGCCCCGTGGGCTCTGGGGGGCCAGCGGGGGCACGCGCCACCCCTTCGACCCAGATTCGT AAACCATGTAAGCTCTTCTTCTCGAAAAGGTGCTACTGCATTGCCTGCCCCCTGAGCAGC CTTGGAGATTGTGACTTCTGTATATAAATCACCTTTGTGAGGTTCTTTCTATAAATACCT ATTGTTTAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCCGCCCTGACGGAGCCCTACTGCGCCATCTGTACTCTCTTCTACCCATACAGCCAG TCCCTACAGACCGAGAAGGAGACTCCCCAGGCCTCCCTCGGGGAGGGCCCTTCGGCCACA CCGCCTTCCAAAAGTGGCCAGAAGACACGGCCGCTGATCCCCGAGATGTGCTTCATCTCC AGCGGCGAAAACACAGAGCCACTCCCCGCCAACTCGTACATCGGTGACGACGGAACCAGC CTGCTGATCGCCTGTGCCAAGTGCTGCCTGCAGGTCCACGCCAGTTGCTACGGCATCCGC CCTGAGCTGGTCAATGAGGGCTGGACGTGTTCCCGGTGCGCGGCCCACGCCTGGACTGCG GAGTGCTGCCTGTGCAACCTCCGCGGAGGAGCCCTGCAGATGACGACGGACAGGAGGTGG ATCCACGTGATCTGCGCCATTGCCGTCCCCGAAGTGCGGTTCCTGAACGTGATGGAGCGC CACCCCGTGGACATCAGCGCCATCCCCGAGCAGCGGTGGAAGCTGAAATGTGTGTACTGT CGGAAGCGGATGAAGAAGGTGTCTGGCGCCTGCATCCAGTGCTCCTGTGAGCACTGCTCC ACCTCCTTCCATGTGACCTGTGCCCACGCCGCCGGCGTCCTCATGGAGCCAGATGACTGG CCCTACGTCGTCTCCATCACCTGCTTCAAGCACAAGTCAGGGAGCCACAACGTCCAGGTC CTGAGGGCCGTGTCCTTAGGCCAGGTGGTCATCACCAAGAACCGCAACGGGCTTTACTAC CGGTGCCGTGTCATTGGCACCACCACGCAGACCTTCTACGAAGTGAACTTTGACGATGGG TCCTACAGCGACAACCTGTACCCAGAGAGCATCACTAGTAGAGACTGTGTCCGGCTGGGA CCCCCGCCCGAGGGCGAGTTTGTTGAGCTCCGGTGGACTGACGGCAACATCTACAGGGCC AAGTTCATTTCCTCAGTGACCAGTCACATCTACCAGGTGGAATTCGAGGACGGGTCCCAG CTGACGGTGAAGCGTGGCGACCTCTTCACGCTGGACGAGGAGCTCCCCAAGAGGGTCCGG TCGCGCCTATCGGTCAGCACCGGGGCCCCACAGGAAAACGTCTTCTCGGGAGAGGAGGTG AAGGCCGCCAAGCGCCCGCGGGTGGGCACCCCTCGCGCCGCAGAGGACTCGGGGCGGAAC CCGGACTACCTGGCCTTCATGGAGAGCCTCCTGCAGGCTCAGTGCCGGCCCGGAGCCTCC TTCTAGGCCAGCCGGCTGCCCAGCGACCCCCTCGGCCCAGCAAGGCAGGCGCGGCGGGCC CTGGCGTTTGCTTGCTGTGTGAATCCCTGTCCTCGCCTCCCCCGCCCGAGAGCCTACCTC GGCGGCGGCGGCGACAGGAGCGAGCAGGACGCCGCACGCGCCCCCGGACTCAGGGAGCAG GGCCCCGTGGGCTCTGGGGGGCCAGCGGGGGCACGCGCCACCCCTTCGACCCAGATTCGT AAACCATGTAAGCTCTTCTTCTCGAAAAGGTGCTACTGCATTGCCTGCCCCCTGAGCAGC CTTGGAGATTGTGACTTCTGTATATAAATCACCTTTGTGAGGTTCTTTCTATAAATACCT ATTGTTTAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 49-162, + strand, RNAz p=0.991492 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 49-162, + strand, RNAz p=0.991492 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 49-285, gnl|bosTau2|chr7 (14578313-14578077) | |
| 49-285, gnl|Hg17|chr19 (5086336-5086574) | |
| 49-285, gnl|Mm7|chr17 (54554735-54554943) | |
| 415-525, gnl|bosTau2|chr7 (14575970-14575860) | |
| 415-525, gnl|canFam2|chr20 (57667082-57666947) | |
| 415-525, gnl|danRer3|chr1 (19366199-19366315) | |
| 415-525, gnl|dasNov1|scaffold_97982 (1399-1283) | |
| 415-525, gnl|fr1|chrUn (128566483-128566369) | |
| 415-525, gnl|galGal2|chr28 (4043547-4043430) | |
| 415-525, gnl|hg17|chr19 (5088971-5089105) | |
| 415-525, gnl|Hg17|chr19 (5088971-5089081) | |
| 415-525, gnl|loxAfr1|scaffold_36042 (3262-3379) | |
| 415-525, gnl|mm7|chr17 (54555549-54555682) | |
| 415-525, gnl|Mm7|chr17 (54555549-54555659) | |
| 415-525, gnl|monDom2|scaffold_85 (2421425-2421546) | |
| 415-525, gnl|oryCun1|scaffold_197780 (1488-1372) | |
| 415-525, gnl|panTro1|chr20 (5420327-5420461) | |
| 415-525, gnl|rheMac2|chr19 (5049410-5049544) | |
| 415-525, gnl|rn3|chrUn (25375211-25375092) | |
| 415-525, gnl|tetNig1|chr1 (14505164-14505038) | |
| 415-525, gnl|xenTro1|scaffold_157 (853699-853583) | |
| 599-1399, gnl|bosTau2|chr6 (2133539-2132762) | |
| 599-1399, gnl|Hg17|chr19 (5095051-5102677) | |
| 599-1399, gnl|Mm7|chr17 (54557703-54559981) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 49-285, gnl|bosTau2|chr7 (14578313-14578077) | |
| 49-285, gnl|Hg17|chr19 (5086336-5086574) | |
| 49-285, gnl|Mm7|chr17 (54554735-54554943) | |
| 415-525, gnl|bosTau2|chr7 (14575970-14575860) | |
| 415-525, gnl|canFam2|chr20 (57667082-57666947) | |
| 415-525, gnl|danRer3|chr1 (19366199-19366315) | |
| 415-525, gnl|dasNov1|scaffold_97982 (1399-1283) | |
| 415-525, gnl|fr1|chrUn (128566483-128566369) | |
| 415-525, gnl|galGal2|chr28 (4043547-4043430) | |
| 415-525, gnl|hg17|chr19 (5088971-5089105) | |
| 415-525, gnl|Hg17|chr19 (5088971-5089081) | |
| 415-525, gnl|loxAfr1|scaffold_36042 (3262-3379) | |
| 415-525, gnl|mm7|chr17 (54555549-54555682) | |
| 415-525, gnl|Mm7|chr17 (54555549-54555659) | |
| 415-525, gnl|monDom2|scaffold_85 (2421425-2421546) | |
| 415-525, gnl|oryCun1|scaffold_197780 (1488-1372) | |
| 415-525, gnl|panTro1|chr20 (5420327-5420461) | |
| 415-525, gnl|rheMac2|chr19 (5049410-5049544) | |
| 415-525, gnl|rn3|chrUn (25375211-25375092) | |
| 415-525, gnl|tetNig1|chr1 (14505164-14505038) | |
| 415-525, gnl|xenTro1|scaffold_157 (853699-853583) | |
| 599-1399, gnl|bosTau2|chr6 (2133539-2132762) | |
| 599-1399, gnl|Hg17|chr19 (5095051-5102677) | |
| 599-1399, gnl|Mm7|chr17 (54557703-54559981) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| pla (0.401016) | |
| ece (0.229305) | |
| nep (0.183925) | |
| fty (0.17584) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.401016) | |
| ece (0.229305) | |
| nep (0.183925) | |
| fty (0.17584) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| jej (0.0989218) | |
| eje (0.0988338) |