Non-Coding RNA Search

Ss1.1-Utr1-UTR010042E09.5

Sequence:


               
               GTGAGCAGGGGCGGTTGAATCCCCGAGAGGCTATTCAGAGCAAGACTAAATTTACGGAGG
GACTTTCTCTGTACCGGGCTAGTGTCGGAAAGGGACCCTTCAGGCGGCGGGATGTCCTGG
TCCGGCCTTCTCCGTGGCCTCGGCACGTCCCTAAACTGTGATGAGCACACTGAGGCCCTG
AGGTGAACAGTCGCGTGTCGGCGGACCGGGCTAGTGTCGGAAAGGGACCCTTCAGGCGGC
GGGATGTCCTGGTCCGGCCTTCTCCGTGGCCTCGGCACGTCCCTAAACTGTGGCCTCGCC
CTGGTCCCGCGGCCCTGGGCCACGCGCCCCATGGCCACCCTGAATCAGATGCACCGCCTG
GGGCCCCCGAAGCATCCGCCTGGGAAGATGGGCCCCACTGCGGGCCGGCCGCAGCTGAAG
GGCGTGGTCCTGCGCACGTTCATCCGCAAGCCCAAGAAGCCCAACTCGGCCAACCGCAAG
TGCTGCCGCGTGCGCCTCAGCACGGGCCGCGAGGCCGTGTGCTTCATCCCTGGCGAGGGC
CACAGCTTGCAGGAGCACCACGTCGTGCTGGTGCAGGGCGGCCGCACGCAGGACCTGCCT
GGCGTCAAGCTCACCGTGGTGCGTGGCAAGTACGACTGTGGCCACGTGCAGAAGAAGAAG
TGACCGCCCGGGACATGGTGGCAGTTGGGTGTTCATGCGGAAGAAGAACTTTCCCCGGGG
GCGCCTGCAGTATCCTTGGGAAGCCAGTCCGGCTCTAGAAGGATCTGGGCCTGGTTCAAA
CCCTGGCCACCTCTTCCATCAGGACCACCCTGAACCCACAGTGGGTGGGCCATGAGCAAA
AGGAGCCCCTCTCCCAACAGCCTTGGTGTCCATGCATGAAATGCTGGCACCAGGGACTGC
TTCTGCTGGGACAGGACGCTGTACTGCCATCTGCTGAGGAGGGCTTGCAATAAACATGGA
CCCCCCCACACCCCAGGGTTGTGACCTGAACCCCACTGCATGGTATTCGCCCCCCTGTGT
GGTCTTGGCAACAGACCTCCCCTCTGGCCTGTTTCCTCTTCCACAAGAAAACAGCTCCAC
TTACAGCACCGCCTGTGTTGGGTTTGGTGAAGATTAAACTGGATGCCTTACATGCATAAC
ACATGTAATGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAGCAGGGGCGGTTGAATCCCCGAGAGGCTATTCAGAGCAAGACTAAATTTACGGAGG
GACTTTCTCTGTACCGGGCTAGTGTCGGAAAGGGACCCTTCAGGCGGCGGGATGTCCTGG
TCCGGCCTTCTCCGTGGCCTCGGCACGTCCCTAAACTGTGATGAGCACACTGAGGCCCTG
AGGTGAACAGTCGCGTGTCGGCGGACCGGGCTAGTGTCGGAAAGGGACCCTTCAGGCGGC
GGGATGTCCTGGTCCGGCCTTCTCCGTGGCCTCGGCACGTCCCTAAACTGTGGCCTCGCC
CTGGTCCCGCGGCCCTGGGCCACGCGCCCCATGGCCACCCTGAATCAGATGCACCGCCTG
GGGCCCCCGAAGCATCCGCCTGGGAAGATGGGCCCCACTGCGGGCCGGCCGCAGCTGAAG
GGCGTGGTCCTGCGCACGTTCATCCGCAAGCCCAAGAAGCCCAACTCGGCCAACCGCAAG
TGCTGCCGCGTGCGCCTCAGCACGGGCCGCGAGGCCGTGTGCTTCATCCCTGGCGAGGGC
CACAGCTTGCAGGAGCACCACGTCGTGCTGGTGCAGGGCGGCCGCACGCAGGACCTGCCT
GGCGTCAAGCTCACCGTGGTGCGTGGCAAGTACGACTGTGGCCACGTGCAGAAGAAGAAG
TGACCGCCCGGGACATGGTGGCAGTTGGGTGTTCATGCGGAAGAAGAACTTTCCCCGGGG
GCGCCTGCAGTATCCTTGGGAAGCCAGTCCGGCTCTAGAAGGATCTGGGCCTGGTTCAAA
CCCTGGCCACCTCTTCCATCAGGACCACCCTGAACCCACAGTGGGTGGGCCATGAGCAAA
AGGAGCCCCTCTCCCAACAGCCTTGGTGTCCATGCATGAAATGCTGGCACCAGGGACTGC
TTCTGCTGGGACAGGACGCTGTACTGCCATCTGCTGAGGAGGGCTTGCAATAAACATGGA
CCCCCCCACACCCCAGGGTTGTGACCTGAACCCCACTGCATGGTATTCGCCCCCCTGTGT
GGTCTTGGCAACAGACCTCCCCTCTGGCCTGTTTCCTCTTCCACAAGAAAACAGCTCCAC
TTACAGCACCGCCTGTGTTGGGTTTGGTGAAGATTAAACTGGATGCCTTACATGCATAAC
ACATGTAATGGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q53X98_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53X98_HUMAN

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               292-1139, gnl|bosTau2|chr18 (42113043-42113847)
               

               
               292-1139, gnl|Hg17|chr19 (44114812-44115642)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               292-1139, gnl|bosTau2|chr18 (42113043-42113847)
               

               
               292-1139, gnl|Hg17|chr19 (44114812-44115642)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               pla (0.401016)
               

               
               elu (0.385356)
               

               
               nje (0.33184)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)
               

               
               elu (0.385356)
               

               
               nje (0.33184)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	292-1139, gnl\|bosTau2\|chr18 (42113043-42113847)
	292-1139, gnl\|Hg17\|chr19 (44114812-44115642)

	pla (0.401016)
	elu (0.385356)
	nje (0.33184)
	lnt (0.284616)
	cga (0.279096)
	fce (0.271592)
	med (0.232504)
	ece (0.229305)
	nlu (0.191681)
	ill (0.175593)
	fbs (0.175346)
	duo (0.172801)
	eye (0.170503)
	nco (0.161734)
	cag (0.151194)
	hlv (0.139256)
	eep (0.122564)
	jej (0.0989218)
	eje (0.0988338)