Non-Coding RNA Search

Ss1.1-Utr1-UTR010042F05.5

Sequence:


               
               GAACGTGGGTCTGCAGGTGTCTGTGACGTGTGAGCGTGAGAAGCGGGCTTTGGTGAGGCT
ACACAGAGCTGCCCTCCCTGATTCTCCTTAAAACTCACGGAAAGAGGGGAGGCTTCCGAG
GGGGAGCAGTTCCTTAGGTTTTCTTTGGGGTGAAAATCCTGCTTTCCCCTCTAACCCCAA
TGGAGGAAGCCCGCATCCCCCCGCCCCAACGCACTGGGCAGAAGTAAGGGGTGGGATTGT
GCACCTGCTTTGCTGGGGGAGGCGGTGGGGGGAAGGCTTCGTGTCTCGTATTCTCTTCCC
CCATCCCTGTGTCCCAGGCCTGCAGCGTCGGGTGCCAGGGGGACCCCGTGTCACCCACAG
GCCTCCCCCCTTGTTTACCTACAGCCTCCGTGAAGCAGAGGGAGGGGATCCCAGGGCTGT
AAAACTGGAAGCACAGGCCCGGGGCGAGAAAGGGAAGACGGTGCTATTACCTCCAAGTCC
CTTTTCTTGCTCATTGGTGGCCGTGGCGACCCTTGTCGGCTTTATTCATCTCTGGGCTCT
CTTGTTACCCTTCTGGGTCTCCCCTCCCGTCTTCACCCCGCGTCCACTCTGGCCCCACGG
CTGACATCTAGGCACCCTTGGGCCCTTGCAGGAGAGGGAGGGGCCCGCAGGCATATTTGC
AGCCCCCAAGCCGTCACTGTTGGTGAGTTGACTTGGGAATATTTACCCCGGATCAGAGGG
TTGAGCCCCTGCCTGACCCGTCCCTTTCTTTCCCTCCTTGGCCACGGCCAAGGTGAGAGC
AGGTGGAATGTCTTACACATCGCCGGGGGGTTGAGGGAGGCAGAAAGGGAATAATTGTAA
GAGCCTTGGGGCAGCTTCTGCTCCATTCTGTCTCCTCTTGATCTCGAAGCACAATGTGGA
TTCTGGGACCAAAGGTCAGAGACACATCCTGTGGGAGAACCTGCGGTTGGGAGGGGGCGG
GAGGAGGACCTGGGGGAGCATGAAGCAGCCTGTTTTCACTCGGCTTCGTTTTCCTTCCAA
AACAAGGCAAGCCGGCCACTGGACTCTTGCTGCCAGCCCTGTGCTCCTCCCATCCTAAAA
ATAGGGGACCGTTTCTCACACACTCCCAGACAGAGGAGGGACTGTTACACTGGTGCTGAG
GGACCCAGGGGCTGCCGGGAGTCCTTTCTCCTTTCCAGAACCATCCATCCCTAGGAGAGC
ATAGAACCTGAGGGCTGGGCTGAGTCCCTGGTCTTTTTTTTTTTTTTTTTTTAGCAGTTC
ACAGAGGTTTTTTTTTAGCCCATCTAATCCCAGGAAAGGAGATACAGCAAAGCTAGAATG
TGAGTATAACCTAGTGGACCAATAATAAAAGTGCCAGCCCAATGGTGAGAAAACTGAATT
CTCAATATTGCTTCCTGTTTTCTTCCTCGTGGCCCTCCAGGGAAAACTGTTGCTTCATTT
CTGCCTTTTTCTCCCTCACGTATGCACTTTTGGGCTCCCCCCTCCCTTTTTTCTTTTAAT
GCTGGAAAAAAAAAATACCACCCCAGAAACCTGTATTTAAAAACAAACAGAAATGACCAT
GTGAAATTTGCTTCTGTCCAAACATTTCATCCGTATGTGTGTGTGTGTGAAGCCGTCTGT
TCATCTTTTTCTATGGGGTGGTTGTCTCTTCTTGGTCTGTTTTGGTCCCCTCCCTCGTGG
GCTTGTGCTTGGGATCAAATCTTTAATGATTTTGAACATTTGACTTGGACCACAAGTGAA
TCTTTCTCCTGGTGACTCCAATAAAAGTGTAATTTTTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACGTGGGTCTGCAGGTGTCTGTGACGTGTGAGCGTGAGAAGCGGGCTTTGGTGAGGCT
ACACAGAGCTGCCCTCCCTGATTCTCCTTAAAACTCACGGAAAGAGGGGAGGCTTCCGAG
GGGGAGCAGTTCCTTAGGTTTTCTTTGGGGTGAAAATCCTGCTTTCCCCTCTAACCCCAA
TGGAGGAAGCCCGCATCCCCCCGCCCCAACGCACTGGGCAGAAGTAAGGGGTGGGATTGT
GCACCTGCTTTGCTGGGGGAGGCGGTGGGGGGAAGGCTTCGTGTCTCGTATTCTCTTCCC
CCATCCCTGTGTCCCAGGCCTGCAGCGTCGGGTGCCAGGGGGACCCCGTGTCACCCACAG
GCCTCCCCCCTTGTTTACCTACAGCCTCCGTGAAGCAGAGGGAGGGGATCCCAGGGCTGT
AAAACTGGAAGCACAGGCCCGGGGCGAGAAAGGGAAGACGGTGCTATTACCTCCAAGTCC
CTTTTCTTGCTCATTGGTGGCCGTGGCGACCCTTGTCGGCTTTATTCATCTCTGGGCTCT
CTTGTTACCCTTCTGGGTCTCCCCTCCCGTCTTCACCCCGCGTCCACTCTGGCCCCACGG
CTGACATCTAGGCACCCTTGGGCCCTTGCAGGAGAGGGAGGGGCCCGCAGGCATATTTGC
AGCCCCCAAGCCGTCACTGTTGGTGAGTTGACTTGGGAATATTTACCCCGGATCAGAGGG
TTGAGCCCCTGCCTGACCCGTCCCTTTCTTTCCCTCCTTGGCCACGGCCAAGGTGAGAGC
AGGTGGAATGTCTTACACATCGCCGGGGGGTTGAGGGAGGCAGAAAGGGAATAATTGTAA
GAGCCTTGGGGCAGCTTCTGCTCCATTCTGTCTCCTCTTGATCTCGAAGCACAATGTGGA
TTCTGGGACCAAAGGTCAGAGACACATCCTGTGGGAGAACCTGCGGTTGGGAGGGGGCGG
GAGGAGGACCTGGGGGAGCATGAAGCAGCCTGTTTTCACTCGGCTTCGTTTTCCTTCCAA
AACAAGGCAAGCCGGCCACTGGACTCTTGCTGCCAGCCCTGTGCTCCTCCCATCCTAAAA
ATAGGGGACCGTTTCTCACACACTCCCAGACAGAGGAGGGACTGTTACACTGGTGCTGAG
GGACCCAGGGGCTGCCGGGAGTCCTTTCTCCTTTCCAGAACCATCCATCCCTAGGAGAGC
ATAGAACCTGAGGGCTGGGCTGAGTCCCTGGTCTTTTTTTTTTTTTTTTTTTAGCAGTTC
ACAGAGGTTTTTTTTTAGCCCATCTAATCCCAGGAAAGGAGATACAGCAAAGCTAGAATG
TGAGTATAACCTAGTGGACCAATAATAAAAGTGCCAGCCCAATGGTGAGAAAACTGAATT
CTCAATATTGCTTCCTGTTTTCTTCCTCGTGGCCCTCCAGGGAAAACTGTTGCTTCATTT
CTGCCTTTTTCTCCCTCACGTATGCACTTTTGGGCTCCCCCCTCCCTTTTTTCTTTTAAT
GCTGGAAAAAAAAAATACCACCCCAGAAACCTGTATTTAAAAACAAACAGAAATGACCAT
GTGAAATTTGCTTCTGTCCAAACATTTCATCCGTATGTGTGTGTGTGTGAAGCCGTCTGT
TCATCTTTTTCTATGGGGTGGTTGTCTCTTCTTGGTCTGTTTTGGTCCCCTCCCTCGTGG
GCTTGTGCTTGGGATCAAATCTTTAATGATTTTGAACATTTGACTTGGACCACAAGTGAA
TCTTTCTCCTGGTGACTCCAATAAAAGTGTAATTTTTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               450-565, - strand, RNAz p=0.701029
               

               
               693-828, - strand, RNAz p=0.997376

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               450-565, - strand, RNAz p=0.701029
               

               
               693-828, - strand, RNAz p=0.997376

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               374-1778, gnl|bosTau2|chr19 (35589553-35588128)
               

               
               374-1778, gnl|Hg17|chr17 (34330090-34331541)
               

               
               374-1778, gnl|Mm7|chr11 (97946551-97947796)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               374-1778, gnl|bosTau2|chr19 (35589553-35588128)
               

               
               374-1778, gnl|Hg17|chr17 (34330090-34331541)
               

               
               374-1778, gnl|Mm7|chr11 (97946551-97947796)

Expressed library(ies): 32 entry(ies)

More info

Expressed library(ies): 32 entry(ies)

Help | Less info


               
               col (0.780031)
               

               
               cov (0.660764)
               

               
               ill (0.526778)
               

               
               sin (0.524843)
               

               
               cty (0.5204)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               fbs (0.350693)
               

               
               csp (0.322373)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               eep (0.245128)
               

               
               clu (0.239292)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

Expressed library(ies): 32 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.780031)
               

               
               cov (0.660764)
               

               
               ill (0.526778)
               

               
               sin (0.524843)
               

               
               cty (0.5204)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               fbs (0.350693)
               

               
               csp (0.322373)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               eep (0.245128)
               

               
               clu (0.239292)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

	450-565, - strand, RNAz p=0.701029
	693-828, - strand, RNAz p=0.997376

	374-1778, gnl\|bosTau2\|chr19 (35589553-35588128)
	374-1778, gnl\|Hg17\|chr17 (34330090-34331541)
	374-1778, gnl\|Mm7\|chr11 (97946551-97947796)

	col (0.780031)
	cov (0.660764)
	ill (0.526778)
	sin (0.524843)
	cty (0.5204)
	elu (0.385356)
	nlu (0.383362)
	fbs (0.350693)
	csp (0.322373)
	sme (0.305437)
	ski (0.29347)
	eep (0.245128)
	clu (0.239292)
	ebs (0.236602)
	ecc (0.23007)
	jca (0.22792)
	jej (0.197844)
	fcc (0.197785)
	ton (0.1755)
	duo (0.172801)
	mcp (0.170648)
	fhi (0.169578)
	nje (0.16592)
	cag (0.151194)
	hyp (0.142837)
	pty (0.142714)
	nca (0.136874)
	pla (0.133672)
	cly (0.120642)
	pgl (0.118483)
	cbl (0.114797)
	eje (0.0988338)