Ss1.1-Utr1-UTR010043D01.5.5
|
GCGGCGCCCTTGTCAGTGGAGGTGGAGTTCGGAGGCGGTGCGGAGCTCATGGCGGCGCCC
TTGTCAGTGGAGGTGGAGTTCGGAGGCGGTGCGGAGCTCCTGTTTGACGGCGTGAAGAAA
CATCAGGTCACCTTGCCCGGACAGGACGAACCCTGGGACGTCCGGAACCTCCTTGTCTGG
ATCAAGAAGAACTTGCTCAAAGAGCGGCCAGAGTTGTTCATCCAGGGAGACAGCGTGCGG
CCAGGGATTCTGGTGCTGATTAACGATGCCGACTGGGAACTGCTGGGGGAGCTGGACTAC
CAGCTTCAGGACCAGGACAGCATCCTCTTCATATCCACGCTGCACGGCGGCTAAGGGCCC
TCCTCTGTGCCTGAGCCGCCTCGGGGTGGCGAGACCATCAGCCGTCCCCTTGGGCCCTGC
TTCCAGATCTTCCTGTCCCCCTTGGCGGTTTTCTTCCCTAGTCTGTCCCCTGCGCTCCCT
CCAGGCAGGGAAAAGAGGCCAGGTGCTAAAAATGAGCCTCCTCAGGCACGTGAGCAGGGG
GAGGCTGAGCAGGGGGAGGCTGAGCAGGGGAAGGTGCCCCTCAGTGTGTCAGGAGTGGGG
GGGTCTGTGCAGCCAGGTAATAACCCAGCTGCTTTCTGCTCCTCTTCCTCCTCGTGTCTC
AGCCCATACACCCAGTCACCACTCGCGGGCAGCAGGGCCCTGCTGAGGAAGATGAATGGA
CCTGAATAGCTGATGACAGGCCCTCCCTTCTCAGAGATTGGAGCAGTCTCCGCCTCAGTT
TCCCCATCTGGAGGGCAGAGGACTCTGCCTGTCCCCTACTGATATCATTATGGAACCCCA
GCTGGGGTCCCCTATTCAGTGCTGACCCCCCCCCCCAACAGCAGCTGCTCCTCCAACCAC
ACCCCTCCTCCTGCTCCCCCAGCCACAGCCCTTGACCCTGGCCATCCTCCCCCAACACAG
GCCACCAGATGGGCTCCTGAGACGCCCCCTCCCCGCAAAAGGCCTCCTCCATGCAGCTCA
TTCCTCTGGGGCTGGAGAGGAGGAGGGTGGAGGTAAACCTTGGACTTGCAGATAGACTCC
TGCTGTGCAGGGGGGTGGGTTCCCTGTGCCTTAGTTTCCTCCTCAACCACAACTGAATTT
TTATAGTGTTTGAGAAGTGGGGAGATCCTTGGTGGCACAAATGTAGACTTGATCTCCTCT
CCCACCTCCTGCAGGAAGCAGGATCGGGGCAGGCAGCACCTGGTAGGCAGGATGGCTCAC
CCCTCCTCCCTCCATCCCTTCTGGAAGTCCTGGGCCTCAGGGCCTGCAACAGCTGGCCTT
GGGCAAATAAAAGACTAGGTTGTTTACTGGACTTGCCTGAAACTTCATCCTCAGAAACGG
GTGGCACCCCACGTTCCGCCCAGCCGCCGTCTCTGGTCCACCCTCTCTGTCCTCAGCTAA
GCCTTTCAGCACTGCCCTTCATCCGAAAAGGGAGCAGGGCTTGACTCAGACTGTCATAGG
GGGTGATCTGATAGGGCCATCTGGAGAAGGGGTGGCAGAGCCAGTCTGTGCTGACCAGTC
TAGGTCCCAGGTCACGTCCCTGCCCGTCTGTCCAAGGCCAAGCTTTGTCCCGCCAGCTGC
AGCTAGTGGCCCCAGAACGGAGGTGGCATAGATAAGAGTGCTGAGCCCCACTTCCCATGA
CCTGGAGGAAAAGCTTTGTTTGCTGGAGGGAGACCT
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Blue-coloured subsequences are predicted RNA structures by RNAz
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GCGGCGCCCTTGTCAGTGGAGGTGGAGTTCGGAGGCGGTGCGGAGCTCATGGCGGCGCCC
TTGTCAGTGGAGGTGGAGTTCGGAGGCGGTGCGGAGCTCCTGTTTGACGGCGTGAAGAAA
CATCAGGTCACCTTGCCCGGACAGGACGAACCCTGGGACGTCCGGAACCTCCTTGTCTGG
ATCAAGAAGAACTTGCTCAAAGAGCGGCCAGAGTTGTTCATCCAGGGAGACAGCGTGCGG
CCAGGGATTCTGGTGCTGATTAACGATGCCGACTGGGAACTGCTGGGGGAGCTGGACTAC
CAGCTTCAGGACCAGGACAGCATCCTCTTCATATCCACGCTGCACGGCGGCTAAGGGCCC
TCCTCTGTGCCTGAGCCGCCTCGGGGTGGCGAGACCATCAGCCGTCCCCTTGGGCCCTGC
TTCCAGATCTTCCTGTCCCCCTTGGCGGTTTTCTTCCCTAGTCTGTCCCCTGCGCTCCCT
CCAGGCAGGGAAAAGAGGCCAGGTGCTAAAAATGAGCCTCCTCAGGCACGTGAGCAGGGG
GAGGCTGAGCAGGGGGAGGCTGAGCAGGGGAAGGTGCCCCTCAGTGTGTCAGGAGTGGGG
GGGTCTGTGCAGCCAGGTAATAACCCAGCTGCTTTCTGCTCCTCTTCCTCCTCGTGTCTC
AGCCCATACACCCAGTCACCACTCGCGGGCAGCAGGGCCCTGCTGAGGAAGATGAATGGA
CCTGAATAGCTGATGACAGGCCCTCCCTTCTCAGAGATTGGAGCAGTCTCCGCCTCAGTT
TCCCCATCTGGAGGGCAGAGGACTCTGCCTGTCCCCTACTGATATCATTATGGAACCCCA
GCTGGGGTCCCCTATTCAGTGCTGACCCCCCCCCCCAACAGCAGCTGCTCCTCCAACCAC
ACCCCTCCTCCTGCTCCCCCAGCCACAGCCCTTGACCCTGGCCATCCTCCCCCAACACAG
GCCACCAGATGGGCTCCTGAGACGCCCCCTCCCCGCAAAAGGCCTCCTCCATGCAGCTCA
TTCCTCTGGGGCTGGAGAGGAGGAGGGTGGAGGTAAACCTTGGACTTGCAGATAGACTCC
TGCTGTGCAGGGGGGTGGGTTCCCTGTGCCTTAGTTTCCTCCTCAACCACAACTGAATTT
TTATAGTGTTTGAGAAGTGGGGAGATCCTTGGTGGCACAAATGTAGACTTGATCTCCTCT
CCCACCTCCTGCAGGAAGCAGGATCGGGGCAGGCAGCACCTGGTAGGCAGGATGGCTCAC
CCCTCCTCCCTCCATCCCTTCTGGAAGTCCTGGGCCTCAGGGCCTGCAACAGCTGGCCTT
GGGCAAATAAAAGACTAGGTTGTTTACTGGACTTGCCTGAAACTTCATCCTCAGAAACGG
GTGGCACCCCACGTTCCGCCCAGCCGCCGTCTCTGGTCCACCCTCTCTGTCCTCAGCTAA
GCCTTTCAGCACTGCCCTTCATCCGAAAAGGGAGCAGGGCTTGACTCAGACTGTCATAGG
GGGTGATCTGATAGGGCCATCTGGAGAAGGGGTGGCAGAGCCAGTCTGTGCTGACCAGTC
TAGGTCCCAGGTCACGTCCCTGCCCGTCTGTCCAAGGCCAAGCTTTGTCCCGCCAGCTGC
AGCTAGTGGCCCCAGAACGGAGGTGGCATAGATAAGAGTGCTGAGCCCCACTTCCCATGA
CCTGGAGGAAAAGCTTTGTTTGCTGGAGGGAGACCT
|
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gi|27706604|ref|XP_231116.1| |
Protein identifier
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gi|27706604|ref|XP_231116.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
48-545, gnl|bosTau2|chr11 (77267093-77266590) |
| |
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1153-1349, gnl|bosTau2|chr5 (24463795-24463988) |
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1153-1349, gnl|Hg17|chr9 (128232373-128232566) |
| |
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1155-1348, gnl|bosTau2|chr15 (31004698-31004886) |
| |
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1162-1346, gnl|bosTau2|chr10 (6665229-6665408) |
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1162-1346, gnl|Hg17|chr9 (128232382-128232564) |
| |
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1487-1716, gnl|bosTau2|chr11 (78275508-78275737) |
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1487-1716, gnl|canFam2|chr9 (58485020-58484536) |
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1487-1716, gnl|dasNov1|scaffold_33172 (11457-11051) |
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1487-1716, gnl|echTel1|scaffold_276960 (6682-6293) |
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1487-1716, gnl|hg17|chr9 (128232677-128233167) |
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1487-1716, gnl|Hg17|chr9 (128232715-128232952) |
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1487-1716, gnl|mm7|chr2 (29851488-29851886) |
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1487-1716, gnl|Mm7|chr2 (29851516-29851725) |
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1487-1716, gnl|oryCun1|scaffold_198463 (28877-29339) |
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1487-1716, gnl|panTro1|chr11_random (6378389-6377899) |
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1487-1716, gnl|rheMac2|chr15 (10480457-10479958) |
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1487-1716, gnl|rn3|chr3 (8832706-8833080) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
48-545, gnl|bosTau2|chr11 (77267093-77266590) |
| |
|
1153-1349, gnl|bosTau2|chr5 (24463795-24463988) |
|
1153-1349, gnl|Hg17|chr9 (128232373-128232566) |
| |
|
1155-1348, gnl|bosTau2|chr15 (31004698-31004886) |
| |
|
1162-1346, gnl|bosTau2|chr10 (6665229-6665408) |
|
1162-1346, gnl|Hg17|chr9 (128232382-128232564) |
| |
|
1487-1716, gnl|bosTau2|chr11 (78275508-78275737) |
|
1487-1716, gnl|canFam2|chr9 (58485020-58484536) |
|
1487-1716, gnl|dasNov1|scaffold_33172 (11457-11051) |
|
1487-1716, gnl|echTel1|scaffold_276960 (6682-6293) |
|
1487-1716, gnl|hg17|chr9 (128232677-128233167) |
|
1487-1716, gnl|Hg17|chr9 (128232715-128232952) |
|
1487-1716, gnl|mm7|chr2 (29851488-29851886) |
|
1487-1716, gnl|Mm7|chr2 (29851516-29851725) |
|
1487-1716, gnl|oryCun1|scaffold_198463 (28877-29339) |
|
1487-1716, gnl|panTro1|chr11_random (6378389-6377899) |
|
1487-1716, gnl|rheMac2|chr15 (10480457-10479958) |
|
1487-1716, gnl|rn3|chr3 (8832706-8833080) |
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nep (0.36785) |
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csp (0.322373) |
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cty (0.31224) |
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fce (0.271592) |
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med (0.232504) |
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ece (0.229305) |
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mcp (0.170648) |
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eye (0.170503) |
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hyp (0.142837) |
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lnt (0.142308) |
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hlv (0.139256) |
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pla (0.133672) |
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cov (0.132153) |
|
eru (0.120048) |
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pgl (0.118483) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
nep (0.36785) |
|
csp (0.322373) |
|
cty (0.31224) |
|
fce (0.271592) |
|
med (0.232504) |
|
ece (0.229305) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
cov (0.132153) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
ecc (0.115035) |
