Non-Coding RNA Search

Ss1.1-Utr1-UTR010043F02.5

Sequence:


               
               GGGCCCGGGGGCCGCGGAGCTCCGCGAGCCAGTTGCTGGTTGTCAGGACAGTCTCCGCGG
GAGTGGGACGAGGTTGCGTCCCTCGGTCCGGGACGTCCGGTGCCTGCGTAAGGATGAAAG
CCCAGAGGACGCAGGGCCGCTGGAAGCGCAGGTAACGGAGCCGGGGTGCGGTGGGGCCGC
GGCGGGCTTCTCGGACCCGTGCCGGATGGAGAGGACCGAGGCGACGCTGAGTCGCGGCTC
CTAGCGGCGGGACAGCCTGAGCTGCAGCTGCCAGGCGAGGATGTGTGGAGCCCGGGCGGC
ACAGGGGAGCTGAGCGCCTTCGGGCCCCAGGACCCCCGGGGCCAGGGATGAGTTAGCGAG
GGCAGCCGCGGAGGCCCATTCCGATCGCTGCAGGCCACGGCCGCCGCCCGCCCGCCCTTT
CCGTGCGGGATCCGCTAGCTCCTTTACGCGCCTGCCCGCGCTCCCGGCCCCGGAGACCAT
GAGGTTCCGCATCTACAAGCGGAAGGTGCTGATCTTGACGTTCGTGGTGGCCGCCTGCGG
CTTCGTCCTCTGGAGCAGCAATGGGCGACAAAGGAAGAATGAGGCCCTCGCCCCGCCGCT
GCTGGACGCCGAGCCCGTGCGGGGTGCGGGCGCCCGGGCCGGGGACCATCCTGCCATATC
CGTGGGCATCCGCCGGGGCTCCAACGATTCGGCGGCTCCGCTGGTCGCGGCAGCCCCGCA
GCCCGAGGTGGACAACCTGACGCTGCGGTACCGGTCCCTAGTGTACCAACTGAACTTTGA
CCAGACGTTGAGGAATGTGGATAAGGTCAGCTCCTGGGTCCCCCGCGAGCTTGTGCTGGT
GGTCCAGGTGCACAACCGGGCCGAATACCTCAAACTGCTCCTGGACTCACTTCGGAAAGC
CCAGGGAATCGACAACGTCCTCGTCATCTTTAGCCATGACTTCTGGTCGACTGAGATTAA
TCAGCTGATCGCTGGGGTGGATTTCTGTCCGGTTCTGCAGGTGTTCTTTCCTTTCAGCAT
TCAGTTGTACCCTAACGAGTTTCCGGGTACTGACCCCAGAGATTGCCCTAGAGACCTGGA
GAAGAATGCAGCTTTGAAAATGGGATGCATTAATGCTGAATATCCCGACTCCTTCGGCCA
TTACAGAGAGGCCAAGTTCTCCCAAACCAAACACCACTGGTGGTGGAAGCTGCATTTCGT
GTGGGAGAGGGTCAAAGTCCTTCGAGACTATGCTGGCCTCATACTTTTCCTAGAGGAGGA
TCACTACGTAGCCCCAGACTTTTACCATGTCTTCAAAAAGATGTGGAATTTAAAGCAGCA
AGAGTGTCCTGAGTGTGACGTTCTCTCCCTGGGGACCTATACTACCGTTCGCAGTTTCCG
TGACGTTGCTGACAAGGTAGATGTGAAAACGTGGAAATCCACGGAGCACAATATGGGTCT
GGCCTTGACCCGGGATGCCTATCAGAAGCTGATCGAGTGCACAGACACTTTCTGTACTTA
TGATGATTATAACTGGGACTGGACACTTCAATATTTGACTGTATCTTGTCTTCCAAAATT
TTGGAAAGTGCTGGTTCCTCAAGTTCCTAGGATTTTTCATGCTGGAGACTGTGGTATGCA
TCACAAAAAAACCTGTAGACCATCCACACAGAGTGCCCAAATTGAGTCACTCTTAAATAG
TAACAAACAGTACATGTTTCCAGAAACTTTAACTATCAGTGAAAAATTGACAGCAGCCCT
TTCCCCACCTAGGAAAAATGGAGGGTGGGGAGACATTAGGGACCATGAACTCTGTAAGAG
TTATAGAAGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCCGGGGGCCGCGGAGCTCCGCGAGCCAGTTGCTGGTTGTCAGGACAGTCTCCGCGG
GAGTGGGACGAGGTTGCGTCCCTCGGTCCGGGACGTCCGGTGCCTGCGTAAGGATGAAAG
CCCAGAGGACGCAGGGCCGCTGGAAGCGCAGGTAACGGAGCCGGGGTGCGGTGGGGCCGC
GGCGGGCTTCTCGGACCCGTGCCGGATGGAGAGGACCGAGGCGACGCTGAGTCGCGGCTC
CTAGCGGCGGGACAGCCTGAGCTGCAGCTGCCAGGCGAGGATGTGTGGAGCCCGGGCGGC
ACAGGGGAGCTGAGCGCCTTCGGGCCCCAGGACCCCCGGGGCCAGGGATGAGTTAGCGAG
GGCAGCCGCGGAGGCCCATTCCGATCGCTGCAGGCCACGGCCGCCGCCCGCCCGCCCTTT
CCGTGCGGGATCCGCTAGCTCCTTTACGCGCCTGCCCGCGCTCCCGGCCCCGGAGACCAT
GAGGTTCCGCATCTACAAGCGGAAGGTGCTGATCTTGACGTTCGTGGTGGCCGCCTGCGG
CTTCGTCCTCTGGAGCAGCAATGGGCGACAAAGGAAGAATGAGGCCCTCGCCCCGCCGCT
GCTGGACGCCGAGCCCGTGCGGGGTGCGGGCGCCCGGGCCGGGGACCATCCTGCCATATC
CGTGGGCATCCGCCGGGGCTCCAACGATTCGGCGGCTCCGCTGGTCGCGGCAGCCCCGCA
GCCCGAGGTGGACAACCTGACGCTGCGGTACCGGTCCCTAGTGTACCAACTGAACTTTGA
CCAGACGTTGAGGAATGTGGATAAGGTCAGCTCCTGGGTCCCCCGCGAGCTTGTGCTGGT
GGTCCAGGTGCACAACCGGGCCGAATACCTCAAACTGCTCCTGGACTCACTTCGGAAAGC
CCAGGGAATCGACAACGTCCTCGTCATCTTTAGCCATGACTTCTGGTCGACTGAGATTAA
TCAGCTGATCGCTGGGGTGGATTTCTGTCCGGTTCTGCAGGTGTTCTTTCCTTTCAGCAT
TCAGTTGTACCCTAACGAGTTTCCGGGTACTGACCCCAGAGATTGCCCTAGAGACCTGGA
GAAGAATGCAGCTTTGAAAATGGGATGCATTAATGCTGAATATCCCGACTCCTTCGGCCA
TTACAGAGAGGCCAAGTTCTCCCAAACCAAACACCACTGGTGGTGGAAGCTGCATTTCGT
GTGGGAGAGGGTCAAAGTCCTTCGAGACTATGCTGGCCTCATACTTTTCCTAGAGGAGGA
TCACTACGTAGCCCCAGACTTTTACCATGTCTTCAAAAAGATGTGGAATTTAAAGCAGCA
AGAGTGTCCTGAGTGTGACGTTCTCTCCCTGGGGACCTATACTACCGTTCGCAGTTTCCG
TGACGTTGCTGACAAGGTAGATGTGAAAACGTGGAAATCCACGGAGCACAATATGGGTCT
GGCCTTGACCCGGGATGCCTATCAGAAGCTGATCGAGTGCACAGACACTTTCTGTACTTA
TGATGATTATAACTGGGACTGGACACTTCAATATTTGACTGTATCTTGTCTTCCAAAATT
TTGGAAAGTGCTGGTTCCTCAAGTTCCTAGGATTTTTCATGCTGGAGACTGTGGTATGCA
TCACAAAAAAACCTGTAGACCATCCACACAGAGTGCCCAAATTGAGTCACTCTTAAATAG
TAACAAACAGTACATGTTTCCAGAAACTTTAACTATCAGTGAAAAATTGACAGCAGCCCT
TTCCCCACCTAGGAAAAATGGAGGGTGGGGAGACATTAGGGACCATGAACTCTGTAAGAG
TTATAGAAGACT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|2624407|emb|CAA70732.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2624407|emb|CAA70732.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1001-1360, - strand, RNAz p=0.990164
               

               
               1601-1812, + strand, RNAz p=0.898294

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1001-1360, - strand, RNAz p=0.990164
               

               
               1601-1812, + strand, RNAz p=0.898294

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1812, gnl|bosTau2|chr10 (29976556-29978399)
               

               
               1-1812, gnl|Hg17|chr14 (49157239-49159073)
               

               
               1-1812, gnl|Mm7|chr12 (67125664-67127472)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1812, gnl|bosTau2|chr10 (29976556-29978399)
               

               
               1-1812, gnl|Hg17|chr14 (49157239-49159073)
               

               
               1-1812, gnl|Mm7|chr12 (67125664-67127472)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               clu (0.478583)
               

               
               nms (0.427716)
               

               
               mgp (0.230681)
               

               
               nep (0.183925)
               

               
               duo (0.172801)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               ese (0.126502)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.478583)
               

               
               nms (0.427716)
               

               
               mgp (0.230681)
               

               
               nep (0.183925)
               

               
               duo (0.172801)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               ese (0.126502)

	1001-1360, - strand, RNAz p=0.990164
	1601-1812, + strand, RNAz p=0.898294

	1-1812, gnl\|bosTau2\|chr10 (29976556-29978399)
	1-1812, gnl\|Hg17\|chr14 (49157239-49159073)
	1-1812, gnl\|Mm7\|chr12 (67125664-67127472)

	clu (0.478583)
	nms (0.427716)
	mgp (0.230681)
	nep (0.183925)
	duo (0.172801)
	spl (0.143184)
	pla (0.133672)
	ese (0.126502)