Non-Coding RNA Search

Ss1.1-Utr1-UTR010043G01.5

Sequence:


               
               AGTAGTGGAGGCTGGTGGCAGCTTTGGGGGTTACGGTGCCCAGGAGGAAGCCCAGTGCCC
TACCCTGCATTTTCTGGAGGGTGAGGAGGACTCTGAGTCGGACAGTGAGGAAGAGGAGGA
AGATGACGACGATGAGGAAGATGAAGATGATGAAGATGAGGAGGATGGTGATGAGGTGCC
TGTGCCCAGCTTTGGGGAGGCCATGGCTTACTTCGCTATGGTCAAGAGGTACCTCACCTC
CTTCCCCATTGATGACCGTGTGCAAAGCCACATCCTCCACTTGGAACACGACCTGGTCCA
TGTAACCAGGAAGAACCATGCCAGGCAGGCAGGCGTTCGGGGTCTTGGACATCAAAGCTG
AGCCACTGGGCCTAGCCATGCCCCCAACCCGGATGTGGCAGCACCAGCCCAGGGCAGAGG
ACTCTCTGGGCAGCCACTGTGGATGGAGCCAGAGTGGGGAGCCCCAGATCCTTTAGTGAT
GTTCTCCTGGCCCTATGACAGGCCCAGTCACCTCGGTAGGGCCTGGGGCTGGCATCAGCC
TCACTGCCTGCTATTGCCTCTTTCTCAGAATCCTCTATCCTCCCCATTTGCCCCTGGGCT
TGGGGGACCAGGTGGGGAGGGTGGGGAGCTGTCCGGTGCTACCACACCGTGCCATCAGTG
GACTAGGCCATAGTAGCAGCCAGGGATGGACCCTGGAAGCTTCTGGCCAGAGAGTGCCTC
TCCCCTTCTGCCATCCACACCAGGTCTTTGGTGGGGGGGGACCCCAAAGCCATTCTGGGA
AGGGCTCCAGAGAAAAGTCCAGCCTAGGCCCCCAAGGCTGGCAGCCCCCATCCCTGCCCT
TGGGGCCGCCTCAAGAAGCACAGTCTAACTGCAGGCTCCTGAGCCTGCCTCTGCCTGCTT
CCCCACCTCCCCAATCCCTTCCTCTGGCCCAGTCCATGTTACCTTGGCCCTTGGTTTTCT
TTCCAGATCCGAGGTTCTCAAGAGGCCCTCTAGAGGAGTGATAATGAGCGCTTCCCTCGT
GGGCAGCTGCAGGCCCCGTGCCTCTCCTCCCTCCCTGGCAGGGCCCTATCCTGGGCAGAG
GGCCTGGGGCTGGGCCCAGAGTCCAGCCATCCAGCTGCTCCTTTCCCAGTCTGAATTCAA
TAAATCCGTCCACCCCCCTTTTGTGGGGGTGGACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTAGTGGAGGCTGGTGGCAGCTTTGGGGGTTACGGTGCCCAGGAGGAAGCCCAGTGCCC
TACCCTGCATTTTCTGGAGGGTGAGGAGGACTCTGAGTCGGACAGTGAGGAAGAGGAGGA
AGATGACGACGATGAGGAAGATGAAGATGATGAAGATGAGGAGGATGGTGATGAGGTGCC
TGTGCCCAGCTTTGGGGAGGCCATGGCTTACTTCGCTATGGTCAAGAGGTACCTCACCTC
CTTCCCCATTGATGACCGTGTGCAAAGCCACATCCTCCACTTGGAACACGACCTGGTCCA
TGTAACCAGGAAGAACCATGCCAGGCAGGCAGGCGTTCGGGGTCTTGGACATCAAAGCTG
AGCCACTGGGCCTAGCCATGCCCCCAACCCGGATGTGGCAGCACCAGCCCAGGGCAGAGG
ACTCTCTGGGCAGCCACTGTGGATGGAGCCAGAGTGGGGAGCCCCAGATCCTTTAGTGAT
GTTCTCCTGGCCCTATGACAGGCCCAGTCACCTCGGTAGGGCCTGGGGCTGGCATCAGCC
TCACTGCCTGCTATTGCCTCTTTCTCAGAATCCTCTATCCTCCCCATTTGCCCCTGGGCT
TGGGGGACCAGGTGGGGAGGGTGGGGAGCTGTCCGGTGCTACCACACCGTGCCATCAGTG
GACTAGGCCATAGTAGCAGCCAGGGATGGACCCTGGAAGCTTCTGGCCAGAGAGTGCCTC
TCCCCTTCTGCCATCCACACCAGGTCTTTGGTGGGGGGGGACCCCAAAGCCATTCTGGGA
AGGGCTCCAGAGAAAAGTCCAGCCTAGGCCCCCAAGGCTGGCAGCCCCCATCCCTGCCCT
TGGGGCCGCCTCAAGAAGCACAGTCTAACTGCAGGCTCCTGAGCCTGCCTCTGCCTGCTT
CCCCACCTCCCCAATCCCTTCCTCTGGCCCAGTCCATGTTACCTTGGCCCTTGGTTTTCT
TTCCAGATCCGAGGTTCTCAAGAGGCCCTCTAGAGGAGTGATAATGAGCGCTTCCCTCGT
GGGCAGCTGCAGGCCCCGTGCCTCTCCTCCCTCCCTGGCAGGGCCCTATCCTGGGCAGAG
GGCCTGGGGCTGGGCCCAGAGTCCAGCCATCCAGCTGCTCCTTTCCCAGTCTGAATTCAA
TAAATCCGTCCACCCCCCTTTTGTGGGGGTGGACAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2393878|gb|AAB70166.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2393878|gb|AAB70166.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-318, - strand, RNAz p=0.996123
               

               
               439-1174, - strand, RNAz p=0.998705

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-318, - strand, RNAz p=0.996123
               

               
               439-1174, - strand, RNAz p=0.998705

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1174, gnl|bosTau2|chr13 (33760744-33759578)
               

               
               2-1174, gnl|Hg17|chr20 (3713693-3712512)
               

               
               2-1174, gnl|Mm7|chr2 (130919292-130918156)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1174, gnl|bosTau2|chr13 (33760744-33759578)
               

               
               2-1174, gnl|Hg17|chr20 (3713693-3712512)
               

               
               2-1174, gnl|Mm7|chr2 (130919292-130918156)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               amn (0.417711)
               

               
               nep (0.36785)
               

               
               cga (0.279096)
               

               
               eep (0.245128)
               

               
               fbs (0.175346)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               nep (0.36785)
               

               
               cga (0.279096)
               

               
               eep (0.245128)
               

               
               fbs (0.175346)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	120-318, - strand, RNAz p=0.996123
	439-1174, - strand, RNAz p=0.998705

	2-1174, gnl\|bosTau2\|chr13 (33760744-33759578)
	2-1174, gnl\|Hg17\|chr20 (3713693-3712512)
	2-1174, gnl\|Mm7\|chr2 (130919292-130918156)

	amn (0.417711)
	nep (0.36785)
	cga (0.279096)
	eep (0.245128)
	fbs (0.175346)
	ute (0.132784)
	ese (0.126502)
	ebs (0.118301)
	ecc (0.115035)
	cty (0.10408)