Non-Coding RNA Search

Ss1.1-Utr1-UTR010043G03.5.5

Sequence:


               
               CACCCAGCCAGCGCCCCATCCTGTCTGTCCAAGTCCAGACAGAGCTCACTCCTTCCTTCG
AGCCTCGAGGAACCCCTCTTCCCACCAACATGGCCAACAAGGGTCCTTCCTATGGCATGA
GCCGAGAAGTGCAATCCAAAATTGAGAAGAAGTACGACGAGGAGCTGGAGGAACGGCTGG
TGGAGTGGATCATAGTGCAGTGTGGCCCTGATGTAGGGCGCCCGGACCGTGGGCGCCTGG
GCTTCCAGGTCTGGCTGAAGAATGGCGTGATTTTGAGCAAGCTGGTCAACAGCCTGTATC
CTGACGGCTCCAAACCCGTGAAGGTGCCCGAGAACCCACCCTCCATGGTCTTCAAGCAAA
TGGAGCAGGTGGCTCAGTTCTTAAAGGCCGCTGAGGACTATGGCGTCACCAAGACTGACA
TGTTCCAGACTGTTGACCTCTTCGAAGGCAAAGACCTGGCCGCGGTGCAGAGGACCCTGA
TGGCTCTGGGCAGCTTGGCCGTGACCAAGAATGATGGACACTACCGTGGCGATCCCAACT
GGTTTATGAAGAAAGCCCAGGAGCATAAGAGGGAATTCACAGAGAGCCAACTGCAGGAGG
GAAAGCATGTCATTGGCCTGCAGATGGGCAGCAACAGAGGGGCCTCCCAGGCTGGCATGA
CAGGCTACGGACGACCTCGGCAGATCATCAGTTAGAGGGGGTGGGGCAACCCTGGCCCCG
CCCTTGCCCAGCTCGCTGGCTGCAGCCATCCCGCCTCGCCCGCCTCACCCTCACCCGTGT
GGCTCCTTCAGCCCTGGCCAAGCTTCGAGGCTCCATCACTGAGCAAAGGTGACTGCACTT
GGGCAGCTCGCCCGCACCCCTCAGCCCAACTTCCAACCCCAAAGCACTGCTCCCCCAGCC
CACCTCCCAGTTCCTCCATTGGCTCTACTGTCTCCTCATCCCAGGCTGAGCCGGGGAGAC
ATGGGCTGGCGGTGGCCTGGGTGTGGGCAAGTCCACCATCCTCCTTGGCAGCAGATGCCT
GTTGAAGGAGACCCAGCCCAACCTCCCCCCATTTTTTTGCTGGAATAGTTTGGGGGTTGA
AATTCAAAATGAAAAAAAAAAAAATATATACATCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCCAGCCAGCGCCCCATCCTGTCTGTCCAAGTCCAGACAGAGCTCACTCCTTCCTTCG
AGCCTCGAGGAACCCCTCTTCCCACCAACATGGCCAACAAGGGTCCTTCCTATGGCATGA
GCCGAGAAGTGCAATCCAAAATTGAGAAGAAGTACGACGAGGAGCTGGAGGAACGGCTGG
TGGAGTGGATCATAGTGCAGTGTGGCCCTGATGTAGGGCGCCCGGACCGTGGGCGCCTGG
GCTTCCAGGTCTGGCTGAAGAATGGCGTGATTTTGAGCAAGCTGGTCAACAGCCTGTATC
CTGACGGCTCCAAACCCGTGAAGGTGCCCGAGAACCCACCCTCCATGGTCTTCAAGCAAA
TGGAGCAGGTGGCTCAGTTCTTAAAGGCCGCTGAGGACTATGGCGTCACCAAGACTGACA
TGTTCCAGACTGTTGACCTCTTCGAAGGCAAAGACCTGGCCGCGGTGCAGAGGACCCTGA
TGGCTCTGGGCAGCTTGGCCGTGACCAAGAATGATGGACACTACCGTGGCGATCCCAACT
GGTTTATGAAGAAAGCCCAGGAGCATAAGAGGGAATTCACAGAGAGCCAACTGCAGGAGG
GAAAGCATGTCATTGGCCTGCAGATGGGCAGCAACAGAGGGGCCTCCCAGGCTGGCATGA
CAGGCTACGGACGACCTCGGCAGATCATCAGTTAGAGGGGGTGGGGCAACCCTGGCCCCG
CCCTTGCCCAGCTCGCTGGCTGCAGCCATCCCGCCTCGCCCGCCTCACCCTCACCCGTGT
GGCTCCTTCAGCCCTGGCCAAGCTTCGAGGCTCCATCACTGAGCAAAGGTGACTGCACTT
GGGCAGCTCGCCCGCACCCCTCAGCCCAACTTCCAACCCCAAAGCACTGCTCCCCCAGCC
CACCTCCCAGTTCCTCCATTGGCTCTACTGTCTCCTCATCCCAGGCTGAGCCGGGGAGAC
ATGGGCTGGCGGTGGCCTGGGTGTGGGCAAGTCCACCATCCTCCTTGGCAGCAGATGCCT
GTTGAAGGAGACCCAGCCCAACCTCCCCCCATTTTTTTGCTGGAATAGTTTGGGGGTTGA
AATTCAAAATGAAAAAAAAAAAAATATATACATCAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61843069|ref|XP_591146.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61843069|ref|XP_591146.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               81-689, gnl|bosTau2|chr11 (84892293-84892898)
               

               
               81-689, gnl|Hg17|chr8 (107779426-107778831)
               

               
               81-689, gnl|Mm7|chr1 (172475316-172476878)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               81-689, gnl|bosTau2|chr11 (84892293-84892898)
               

               
               81-689, gnl|Hg17|chr8 (107779426-107778831)
               

               
               81-689, gnl|Mm7|chr1 (172475316-172476878)

Expressed library(ies): 35 entry(ies)

More info

Expressed library(ies): 35 entry(ies)

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               pla (4.81219)
               

               
               nlu (2.30017)
               

               
               cov (2.11444)
               

               
               eru (2.04082)
               

               
               nco (1.61734)
               

               
               nep (1.28747)
               

               
               csp (1.1283)
               

               
               eje (1.08717)
               

               
               mcp (1.02389)
               

               
               nje (0.8296)
               

               
               ute (0.663922)
               

               
               pty (0.570858)
               

               
               jca (0.569801)
               

               
               mas (0.42061)
               

               
               hlv (0.417769)
               

               
               elu (0.385356)
               

               
               cly (0.361925)
               

               
               cag (0.302389)
               

               
               jej (0.296765)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               eep (0.245128)
               

               
               med (0.232504)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               cty (0.10408)

Expressed library(ies): 35 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (4.81219)
               

               
               nlu (2.30017)
               

               
               cov (2.11444)
               

               
               eru (2.04082)
               

               
               nco (1.61734)
               

               
               nep (1.28747)
               

               
               csp (1.1283)
               

               
               eje (1.08717)
               

               
               mcp (1.02389)
               

               
               nje (0.8296)
               

               
               ute (0.663922)
               

               
               pty (0.570858)
               

               
               jca (0.569801)
               

               
               mas (0.42061)
               

               
               hlv (0.417769)
               

               
               elu (0.385356)
               

               
               cly (0.361925)
               

               
               cag (0.302389)
               

               
               jej (0.296765)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               eep (0.245128)
               

               
               med (0.232504)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               cty (0.10408)

	81-689, gnl\|bosTau2\|chr11 (84892293-84892898)
	81-689, gnl\|Hg17\|chr8 (107779426-107778831)
	81-689, gnl\|Mm7\|chr1 (172475316-172476878)

	pla (4.81219)
	nlu (2.30017)
	cov (2.11444)
	eru (2.04082)
	nco (1.61734)
	nep (1.28747)
	csp (1.1283)
	eje (1.08717)
	mcp (1.02389)
	nje (0.8296)
	ute (0.663922)
	pty (0.570858)
	jca (0.569801)
	mas (0.42061)
	hlv (0.417769)
	elu (0.385356)
	cly (0.361925)
	cag (0.302389)
	jej (0.296765)
	lnt (0.284616)
	cga (0.279096)
	nca (0.273748)
	che (0.272628)
	fce (0.271592)
	eep (0.245128)
	med (0.232504)
	ton (0.1755)
	fhi (0.169578)
	cli (0.152812)
	eli (0.151814)
	spl (0.143184)
	hyp (0.142837)
	cst (0.140036)
	nmm (0.132802)
	cty (0.10408)