Non-Coding RNA Search

Ss1.1-Utr1-UTR010043G04.5

Sequence:


               
               GCCTCCAGCCACACGTTCCTCGTCCGTGGAAGGTGGTAAACCCCAGCGCCTCCTACCTCA
CCTCGTGTCGCCAGGGTCATCACAGATTTAGAGGCAACGGGCACATAGGAAGCCTGGTTT
TGACCTTCCTTTCACGTTCAGAGCCCCCTTTCTCTTCCATGTTGATCTCCACCCCTTTTC
CTAGTCAGAATCACTCAAGAAGAACCTTTCTTTCTGGAGTGAAAAGTCCCACGGGTGCCA
AGTGAGGTAAGACTTTCCCCTTGGGCTGTACTGCCCAGGAGCCCCATGTACCTCAGTGGA
ACAGACTCTTACCAAAGCAGTGAGGTCCAGACGGGAGGCCCCAGCAGTAGCATCGGGCCT
CATGGAGAAGCCTTGATGGCAGCTAGCTTCTTGTGCCTCTTAGATCGAACCACTTCGGGT
GCTACCTGTTATAGACCAGCCCCTGGTTTGGGTGATTTTTGAAGCTGGAGTGATGGGTCC
TCAGCTCTCTGATTGTCTAATTTGTCTGGCACTCTTTGAAGTTTTCAGGCCTCCTGGCTG
AACCACTTCCTGTTGCCCCCTGACCCTCACACGTCTCCTAAAGTCGTGAACCGAGTTGGG
GGCAGATGGGTATGTTGCTATCACCTCTGGGCTGTCAGCAAGTGTTCAGACAGGATGTTG
TGCTAGTGTAGCTGCTGAGAGTTTAACCCTCAGCTGCAAAAGCTAGTCTCAGGTGTTTCC
TTGGGGATGCTCAGGGCTCAGAGTTTCTAGGCCTTCTAATGCGAAATGCCCTGTGTAAAT
ACACAAGCTCTAACAGAAGGAGCAATTGCCAAGCACTGGTGCTCCCCTTCCAAAGCATTT
TTTGTGCCAGGCTCCCAGCTAGTCCTTGTGAGTTTGCCGGGCACGAACAAGTGTGCAAAG
GACGTTCTTTACACTGAGTCAACACAGGCTGCGGAGCCTGGGAGAGGCTGGAGCCTAGTT
TGGGCCCAGACTCACTCCCAGCTCTGGGTCGCGGCTTCGTCATTTGTAAAACAAAGTTGG
GATTCTGGTGTTAAAGGCCCTCAAGAACTGACAGGGGCAGAACCTTGACCCGATCAGTGC
TATAAATAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTCCAGCCACACGTTCCTCGTCCGTGGAAGGTGGTAAACCCCAGCGCCTCCTACCTCA
CCTCGTGTCGCCAGGGTCATCACAGATTTAGAGGCAACGGGCACATAGGAAGCCTGGTTT
TGACCTTCCTTTCACGTTCAGAGCCCCCTTTCTCTTCCATGTTGATCTCCACCCCTTTTC
CTAGTCAGAATCACTCAAGAAGAACCTTTCTTTCTGGAGTGAAAAGTCCCACGGGTGCCA
AGTGAGGTAAGACTTTCCCCTTGGGCTGTACTGCCCAGGAGCCCCATGTACCTCAGTGGA
ACAGACTCTTACCAAAGCAGTGAGGTCCAGACGGGAGGCCCCAGCAGTAGCATCGGGCCT
CATGGAGAAGCCTTGATGGCAGCTAGCTTCTTGTGCCTCTTAGATCGAACCACTTCGGGT
GCTACCTGTTATAGACCAGCCCCTGGTTTGGGTGATTTTTGAAGCTGGAGTGATGGGTCC
TCAGCTCTCTGATTGTCTAATTTGTCTGGCACTCTTTGAAGTTTTCAGGCCTCCTGGCTG
AACCACTTCCTGTTGCCCCCTGACCCTCACACGTCTCCTAAAGTCGTGAACCGAGTTGGG
GGCAGATGGGTATGTTGCTATCACCTCTGGGCTGTCAGCAAGTGTTCAGACAGGATGTTG
TGCTAGTGTAGCTGCTGAGAGTTTAACCCTCAGCTGCAAAAGCTAGTCTCAGGTGTTTCC
TTGGGGATGCTCAGGGCTCAGAGTTTCTAGGCCTTCTAATGCGAAATGCCCTGTGTAAAT
ACACAAGCTCTAACAGAAGGAGCAATTGCCAAGCACTGGTGCTCCCCTTCCAAAGCATTT
TTTGTGCCAGGCTCCCAGCTAGTCCTTGTGAGTTTGCCGGGCACGAACAAGTGTGCAAAG
GACGTTCTTTACACTGAGTCAACACAGGCTGCGGAGCCTGGGAGAGGCTGGAGCCTAGTT
TGGGCCCAGACTCACTCCCAGCTCTGGGTCGCGGCTTCGTCATTTGTAAAACAAAGTTGG
GATTCTGGTGTTAAAGGCCCTCAAGAACTGACAGGGGCAGAACCTTGACCCGATCAGTGC
TATAAATAAATA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-233, - strand, RNAz p=0.937366
               

               
               188-296, - strand, RNAz p=0.702926

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-233, - strand, RNAz p=0.937366
               

               
               188-296, - strand, RNAz p=0.702926

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               2-522, gnl|bosTau2|chr4 (65423807-65424312)
               

               
               2-522, gnl|canFam2|chr16 (17262612-17263138)
               

               
               2-522, gnl|dasNov1|scaffold_17528 (40992-41530)
               

               
               2-522, gnl|hg17|chr7 (148418283-148418802)
               

               
               2-522, gnl|Hg17|chr7 (148418456-148418958)
               

               
               2-522, gnl|oryCun1|scaffold_68890 (4591-4982)
               

               
               2-522, gnl|panTro1|chr6 (151282215-151282732)
               

               
               2-522, gnl|rheMac2|chr3 (186605363-186605881)
               

               
               2-522, gnl|rn3|chr4 (76356159-76356447)
               


               
               627-1088, gnl|bosTau2|chr4 (65424549-65425014)
               

               
               627-1088, gnl|Hg17|chr7 (148419233-148419715)
               

               
               627-1088, gnl|Mm7|chr6 (47911917-47912420)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-522, gnl|bosTau2|chr4 (65423807-65424312)
               

               
               2-522, gnl|canFam2|chr16 (17262612-17263138)
               

               
               2-522, gnl|dasNov1|scaffold_17528 (40992-41530)
               

               
               2-522, gnl|hg17|chr7 (148418283-148418802)
               

               
               2-522, gnl|Hg17|chr7 (148418456-148418958)
               

               
               2-522, gnl|oryCun1|scaffold_68890 (4591-4982)
               

               
               2-522, gnl|panTro1|chr6 (151282215-151282732)
               

               
               2-522, gnl|rheMac2|chr3 (186605363-186605881)
               

               
               2-522, gnl|rn3|chr4 (76356159-76356447)
               


               
               627-1088, gnl|bosTau2|chr4 (65424549-65425014)
               

               
               627-1088, gnl|Hg17|chr7 (148419233-148419715)
               

               
               627-1088, gnl|Mm7|chr6 (47911917-47912420)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fce (0.271592)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)

	120-233, - strand, RNAz p=0.937366
	188-296, - strand, RNAz p=0.702926

	2-522, gnl\|bosTau2\|chr4 (65423807-65424312)
	2-522, gnl\|canFam2\|chr16 (17262612-17263138)
	2-522, gnl\|dasNov1\|scaffold_17528 (40992-41530)
	2-522, gnl\|hg17\|chr7 (148418283-148418802)
	2-522, gnl\|Hg17\|chr7 (148418456-148418958)
	2-522, gnl\|oryCun1\|scaffold_68890 (4591-4982)
	2-522, gnl\|panTro1\|chr6 (151282215-151282732)
	2-522, gnl\|rheMac2\|chr3 (186605363-186605881)
	2-522, gnl\|rn3\|chr4 (76356159-76356447)

	627-1088, gnl\|bosTau2\|chr4 (65424549-65425014)
	627-1088, gnl\|Hg17\|chr7 (148419233-148419715)
	627-1088, gnl\|Mm7\|chr6 (47911917-47912420)