Ss1.1-Utr1-UTR010043G10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTGACGTTGAACTCAGAGGAGTGGTTGTCCAGCAGGCCCAGCTTGCTCAGCTCCTCATC CACCACATCCATGACGTGCTTGGGAACCACCAGCTCCTTCAGCCGCTCTCGGAACTTCTC CTCGATGGCATCCTTGTCGTCCTTCTCCAGGCCCAGCTCCTTCTTGATGATCTTCAGCTG CTCCTGCAGCAGATATTTGCGATGTGTCTGCTTGATCTTCTCCTCCACCTCGCGGCCCAG GCGCTGCTGCAGCTTGCTCAGCTCAAACTCCTTTTTGAGGAGGGACAGGGCTTTATACAG CCGCTTGGGAATATTGGTCTCCTCCAGCACATCCTGCAGCTCGTGGGACTCGGCTCCAGT GAGGGCGGCGCCCATGTCACTCAGGTAGATGGGGTTGTCCACCACCCTGTGGCCGGCCTG CATCATCTGCAGCACAGACTCTCTGTACAGCGGGTTCAAGGCGATGATATCCCGGATGGT CTTCACAATCTCTGCAGTCAGGGCCTTCACCTCCTCTGTGACCTGGAAGTCCTCATGGAC GACATTCTCCACCTCCACCATCAGCACCTCGCCAGTGGGGCTGAGGCCTGGCTCCACCAC CACCTCCACCTGCTGCTTGGCGCCCCCATCCTCCTCCACCTCCTTCTTGCTCCGCTTTGG CTTCCTGCGAGGCTTCTGCTTTTCACCCTCCGGCTCTTCTGGCTCCACCTCCAGCTGTCT GTTGATGTGAACCCTCCTGTGTCCCATGACGATCATGCGCAGCTTGTCCCCAAGGTCCTG CATCTCGTGGATCTGGACAAATGTCCCCGTGTGATAGATCTCGTCCAGGCTCTCAACCAC GTCAGACTCATTGTTGTCATCTCTCTTTAGAAAGACGCCGGCATATGGCTGGGCGAGGCG GACTTTCCTTCTTAGCAGCTCAACCAACTTTTTATTTTTAACCTCGACAATCTTGATAAA GCGCGGGAACACTGGGTTGCGCGTAACGGCGATGAGCGGCAGGTGCGGGAATACGTCCGG TATCGTCATGGGCGTTAGCGCCGTTATGACTGGGCCTTCACCGCCGCCGGCGTTGCCTCC CACTCCCGAGGCCCCATCCTCCGCGCCGCCCTCGGGGGCATCCTCGCCACCCGAGAATGC GCCTCCGCTGCTGCGGTTGTTCGCCTCCCAAAGTCCCCGCCAGTGGCCCGCGGCAGCGGG GCCTTGGCCCCACTGCGCCCAGGGAGGCGAGGCGTCGCAGGCCCGCCGGCCTCTGGGCAA CCACGCTCTGACTGCAGTCGGAACCCGCCCCGCGGCGGCGGCCAGCAGCGGCCGCCGAAG CGCCCACCACCTCGCAGCTCCCCACAGCCGGACACAGCCTGCACCCGCCGCCATGGCCCG GCCATCCTGGCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTGACGTTGAACTCAGAGGAGTGGTTGTCCAGCAGGCCCAGCTTGCTCAGCTCCTCATC CACCACATCCATGACGTGCTTGGGAACCACCAGCTCCTTCAGCCGCTCTCGGAACTTCTC CTCGATGGCATCCTTGTCGTCCTTCTCCAGGCCCAGCTCCTTCTTGATGATCTTCAGCTG CTCCTGCAGCAGATATTTGCGATGTGTCTGCTTGATCTTCTCCTCCACCTCGCGGCCCAG GCGCTGCTGCAGCTTGCTCAGCTCAAACTCCTTTTTGAGGAGGGACAGGGCTTTATACAG CCGCTTGGGAATATTGGTCTCCTCCAGCACATCCTGCAGCTCGTGGGACTCGGCTCCAGT GAGGGCGGCGCCCATGTCACTCAGGTAGATGGGGTTGTCCACCACCCTGTGGCCGGCCTG CATCATCTGCAGCACAGACTCTCTGTACAGCGGGTTCAAGGCGATGATATCCCGGATGGT CTTCACAATCTCTGCAGTCAGGGCCTTCACCTCCTCTGTGACCTGGAAGTCCTCATGGAC GACATTCTCCACCTCCACCATCAGCACCTCGCCAGTGGGGCTGAGGCCTGGCTCCACCAC CACCTCCACCTGCTGCTTGGCGCCCCCATCCTCCTCCACCTCCTTCTTGCTCCGCTTTGG CTTCCTGCGAGGCTTCTGCTTTTCACCCTCCGGCTCTTCTGGCTCCACCTCCAGCTGTCT GTTGATGTGAACCCTCCTGTGTCCCATGACGATCATGCGCAGCTTGTCCCCAAGGTCCTG CATCTCGTGGATCTGGACAAATGTCCCCGTGTGATAGATCTCGTCCAGGCTCTCAACCAC GTCAGACTCATTGTTGTCATCTCTCTTTAGAAAGACGCCGGCATATGGCTGGGCGAGGCG GACTTTCCTTCTTAGCAGCTCAACCAACTTTTTATTTTTAACCTCGACAATCTTGATAAA GCGCGGGAACACTGGGTTGCGCGTAACGGCGATGAGCGGCAGGTGCGGGAATACGTCCGG TATCGTCATGGGCGTTAGCGCCGTTATGACTGGGCCTTCACCGCCGCCGGCGTTGCCTCC CACTCCCGAGGCCCCATCCTCCGCGCCGCCCTCGGGGGCATCCTCGCCACCCGAGAATGC GCCTCCGCTGCTGCGGTTGTTCGCCTCCCAAAGTCCCCGCCAGTGGCCCGCGGCAGCGGG GCCTTGGCCCCACTGCGCCCAGGGAGGCGAGGCGTCGCAGGCCCGCCGGCCTCTGGGCAA CCACGCTCTGACTGCAGTCGGAACCCGCCCCGCGGCGGCGGCCAGCAGCGGCCGCCGAAG CGCCCACCACCTCGCAGCTCCCCACAGCCGGACACAGCCTGCACCCGCCGCCATGGCCCG GCCATCCTGGCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 8-126, - strand, RNAz p=0.632449 | |
| 110-229, - strand, RNAz p=0.99549 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 8-126, - strand, RNAz p=0.632449 | |
| 110-229, - strand, RNAz p=0.99549 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 8-242, gnl|bosTau2|chr7 (13328845-13328610) | |
| 8-242, gnl|canFam2|chr20 (57268599-57268422) | |
| 8-242, gnl|danRer3|chr2 (11396976-11397131) | |
| 8-242, gnl|dasNov1|scaffold_80064 (637-453) | |
| 8-242, gnl|echTel1|scaffold_252856 (587-746) | |
| 8-242, gnl|fr1|chrUn (302374839-302374683) | |
| 8-242, gnl|galGal2|chr28 (631361-631524) | |
| 8-242, gnl|hg17|chr19 (5656752-5656934) | |
| 8-242, gnl|Hg17|chr19 (5656783-5657019) | |
| 8-242, gnl|loxAfr1|scaffold_3490 (16720-16522) | |
| 8-242, gnl|mm7|chr17 (54828827-54828983) | |
| 8-242, gnl|Mm7|chr17 (54828832-54829058) | |
| 8-242, gnl|monDom2|scaffold_85 (3474066-3474229) | |
| 8-242, gnl|panTro1|chr20 (5981072-5981254) | |
| 8-242, gnl|rheMac2|chr19 (5602113-5602295) | |
| 8-242, gnl|rn3|chrUn (25159094-25158938) | |
| 8-242, gnl|tetNig1|chrUn_random (49787002-49786823) | |
| 8-242, gnl|xenTro1|scaffold_87 (2177790-2177630) | |
| 314-445, gnl|bosTau2|chr7 (13327396-13327265) | |
| 314-445, gnl|canFam2|chr20 (57266373-57266230) | |
| 314-445, gnl|danRer3|chr2 (11399443-11399585) | |
| 314-445, gnl|dasNov1|scaffold_288145 (1127-1270) | |
| 314-445, gnl|echTel1|scaffold_202057 (12-157) | |
| 314-445, gnl|galGal2|chr28 (632679-632820) | |
| 314-445, gnl|hg17|chr19 (5658702-5658845) | |
| 314-445, gnl|Hg17|chr19 (5658709-5658840) | |
| 314-445, gnl|loxAfr1|scaffold_3490 (15240-15097) | |
| 314-445, gnl|mm7|chr17 (54829877-54830020) | |
| 314-445, gnl|Mm7|chr17 (54829884-54830015) | |
| 314-445, gnl|monDom2|scaffold_85 (3479521-3479663) | |
| 314-445, gnl|panTro1|chr20 (5983079-5983222) | |
| 314-445, gnl|rheMac2|chr19 (5604061-5604204) | |
| 314-445, gnl|rn3|chrUn (25158053-25157913) | |
| 314-445, gnl|tetNig1|chrUn_random (49786352-49786209) | |
| 314-445, gnl|xenTro1|scaffold_87 (2174568-2174426) | |
| 504-735, gnl|bosTau2|chr7 (13326824-13326590) | |
| 504-735, gnl|Hg17|chr19 (5662781-5663015) | |
| 504-735, gnl|Mm7|chr17 (54831583-54831820) | |
| 941-1392, gnl|bosTau2|chr7 (13320436-13319985) | |
| 941-1392, gnl|Hg17|chr19 (5670713-5671161) | |
| 941-1392, gnl|Mm7|chr17 (54836139-54836551) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-242, gnl|bosTau2|chr7 (13328845-13328610) | |
| 8-242, gnl|canFam2|chr20 (57268599-57268422) | |
| 8-242, gnl|danRer3|chr2 (11396976-11397131) | |
| 8-242, gnl|dasNov1|scaffold_80064 (637-453) | |
| 8-242, gnl|echTel1|scaffold_252856 (587-746) | |
| 8-242, gnl|fr1|chrUn (302374839-302374683) | |
| 8-242, gnl|galGal2|chr28 (631361-631524) | |
| 8-242, gnl|hg17|chr19 (5656752-5656934) | |
| 8-242, gnl|Hg17|chr19 (5656783-5657019) | |
| 8-242, gnl|loxAfr1|scaffold_3490 (16720-16522) | |
| 8-242, gnl|mm7|chr17 (54828827-54828983) | |
| 8-242, gnl|Mm7|chr17 (54828832-54829058) | |
| 8-242, gnl|monDom2|scaffold_85 (3474066-3474229) | |
| 8-242, gnl|panTro1|chr20 (5981072-5981254) | |
| 8-242, gnl|rheMac2|chr19 (5602113-5602295) | |
| 8-242, gnl|rn3|chrUn (25159094-25158938) | |
| 8-242, gnl|tetNig1|chrUn_random (49787002-49786823) | |
| 8-242, gnl|xenTro1|scaffold_87 (2177790-2177630) | |
| 314-445, gnl|bosTau2|chr7 (13327396-13327265) | |
| 314-445, gnl|canFam2|chr20 (57266373-57266230) | |
| 314-445, gnl|danRer3|chr2 (11399443-11399585) | |
| 314-445, gnl|dasNov1|scaffold_288145 (1127-1270) | |
| 314-445, gnl|echTel1|scaffold_202057 (12-157) | |
| 314-445, gnl|galGal2|chr28 (632679-632820) | |
| 314-445, gnl|hg17|chr19 (5658702-5658845) | |
| 314-445, gnl|Hg17|chr19 (5658709-5658840) | |
| 314-445, gnl|loxAfr1|scaffold_3490 (15240-15097) | |
| 314-445, gnl|mm7|chr17 (54829877-54830020) | |
| 314-445, gnl|Mm7|chr17 (54829884-54830015) | |
| 314-445, gnl|monDom2|scaffold_85 (3479521-3479663) | |
| 314-445, gnl|panTro1|chr20 (5983079-5983222) | |
| 314-445, gnl|rheMac2|chr19 (5604061-5604204) | |
| 314-445, gnl|rn3|chrUn (25158053-25157913) | |
| 314-445, gnl|tetNig1|chrUn_random (49786352-49786209) | |
| 314-445, gnl|xenTro1|scaffold_87 (2174568-2174426) | |
| 504-735, gnl|bosTau2|chr7 (13326824-13326590) | |
| 504-735, gnl|Hg17|chr19 (5662781-5663015) | |
| 504-735, gnl|Mm7|chr17 (54831583-54831820) | |
| 941-1392, gnl|bosTau2|chr7 (13320436-13319985) | |
| 941-1392, gnl|Hg17|chr19 (5670713-5671161) | |
| 941-1392, gnl|Mm7|chr17 (54836139-54836551) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.172801) | |
| ecc (0.115035) |